Gvermi12855.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12855.t1
Unique NameGvermi12855.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1814279..1815781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12855Gvermi12855Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1814279..1815781 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12855.t1.stop1Gvermi12855.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1814279..1814281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12855.t1.CDS1Gvermi12855.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1814279..1815781 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12855.t1.exon1Gvermi12855.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1814279..1815781 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12855.t1.start1Gvermi12855.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1815779..1815781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12855.t1Gvermi12855.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1814279..1815781 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12855.t1 ID=Gvermi12855.t1|Name=Gvermi12855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp
MTCVPFVPTPNDNSDIPPLPVLAQLELRAGDPAAAARLLSRHLSETPTDA
RSWIEYAKAARKAHGHKHAAQILQRAVGHVQNDAYVWHFYASCEAAASGK
SSARKVYKRALENCPDNAVLLSALAALESSVSNFATAAKLFQRAIEADIQ
DPYIYMQWANMELRRRNFSKASSVFEMGVRAVRKSKAAPLYTAYAGHEAK
RGKFQRARFLYMRAAEADPKDKLVWHAWASLEHRTGNNERARQLFERAIV
ADPSFPCSWQAWGLLEEREQKFNAARCLYERGTRADPHDPLNWQAWALLE
ARTGNVTESRRLFREAADRVGEGKAAMLYMNWALLEANVGDTESARTLFM
QGMNSRKENSQDVIRLVHVWAGVERKEGNVTKARELYNRALRINSRDYKV
LHAFSSLEQDDGNYEASRELLKKSVRFSSGDLMAIRSLAMLEWKHFAEDG
GVERARKLFAETTRRRGRHASLLRVWAALEEDQGDSDKAERLRILANKRQ
*
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spliced messenger RNA

>Gvermi12855.t1 ID=Gvermi12855.t1|Name=Gvermi12855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:1814279..1815781- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTGCGTCCCGTTCGTGCCAACCCCCAACGACAACTCGGACATCCC
GCCGCTTCCGGTGCTAGCGCAGCTCGAGCTCCGCGCCGGCGATCCGGCCG
CCGCCGCCCGTCTGCTATCTAGGCATCTTTCCGAAACCCCCACTGACGCG
CGTTCATGGATAGAGTACGCAAAAGCGGCGCGAAAGGCCCACGGCCATAA
GCACGCCGCCCAGATACTGCAACGCGCTGTGGGGCACGTCCAGAACGACG
CGTACGTTTGGCATTTTTACGCCAGTTGTGAGGCTGCCGCCTCGGGAAAG
TCTTCCGCCCGCAAGGTGTACAAGCGCGCCTTGGAGAACTGCCCCGACAA
CGCCGTGCTCCTCAGCGCACTGGCCGCTTTGGAAAGCAGTGTCTCCAACT
TTGCCACCGCTGCAAAACTGTTTCAGCGAGCAATTGAAGCCGACATCCAG
GACCCTTACATCTACATGCAGTGGGCCAACATGGAGCTGCGGCGAAGAAA
CTTCTCAAAGGCATCAAGCGTGTTCGAAATGGGCGTGAGAGCGGTGAGGA
AGAGCAAGGCCGCCCCTCTGTACACTGCGTACGCGGGTCACGAAGCCAAG
CGCGGCAAATTTCAACGCGCCCGTTTTCTCTACATGCGTGCCGCGGAGGC
GGACCCCAAGGACAAACTTGTGTGGCACGCGTGGGCGTCCTTGGAGCACC
GCACCGGAAACAATGAGCGCGCCCGACAATTGTTTGAACGTGCGATTGTC
GCAGACCCCTCCTTCCCTTGTAGCTGGCAAGCGTGGGGTTTGCTTGAGGA
AAGAGAGCAGAAATTCAACGCGGCAAGGTGTCTGTACGAAAGGGGTACAA
GGGCTGATCCACACGACCCGCTCAATTGGCAGGCATGGGCGCTTCTGGAG
GCCCGCACAGGGAATGTCACCGAGTCAAGACGCTTGTTCCGAGAGGCTGC
CGACCGTGTCGGCGAGGGAAAAGCAGCCATGCTCTACATGAACTGGGCGC
TCTTGGAAGCAAACGTGGGTGACACTGAAAGTGCCCGAACTCTCTTCATG
CAAGGGATGAATAGTCGCAAAGAGAATTCGCAGGACGTGATTCGACTGGT
GCACGTGTGGGCTGGCGTCGAGCGCAAAGAGGGAAACGTCACCAAAGCCC
GGGAGCTGTACAACCGTGCGCTGCGAATCAACTCACGCGACTACAAAGTT
TTGCACGCGTTCTCCTCGCTGGAGCAGGATGATGGGAATTATGAGGCGTC
GAGGGAGTTGCTGAAAAAGAGCGTGCGGTTTTCTTCTGGCGATTTGATGG
CGATTCGCTCACTTGCCATGCTGGAGTGGAAACATTTTGCTGAGGACGGT
GGCGTTGAACGGGCACGCAAATTGTTTGCGGAGACTACAAGACGGCGTGG
TAGGCATGCCTCGTTGTTGCGCGTTTGGGCGGCGTTGGAAGAAGACCAGG
GAGATAGTGATAAGGCAGAGAGGTTGAGAATACTTGCAAACAAGAGACAG
TGA
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protein sequence of Gvermi12855.t1

>Gvermi12855.t1 ID=Gvermi12855.t1|Name=Gvermi12855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=501bp
MTCVPFVPTPNDNSDIPPLPVLAQLELRAGDPAAAARLLSRHLSETPTDA
RSWIEYAKAARKAHGHKHAAQILQRAVGHVQNDAYVWHFYASCEAAASGK
SSARKVYKRALENCPDNAVLLSALAALESSVSNFATAAKLFQRAIEADIQ
DPYIYMQWANMELRRRNFSKASSVFEMGVRAVRKSKAAPLYTAYAGHEAK
RGKFQRARFLYMRAAEADPKDKLVWHAWASLEHRTGNNERARQLFERAIV
ADPSFPCSWQAWGLLEEREQKFNAARCLYERGTRADPHDPLNWQAWALLE
ARTGNVTESRRLFREAADRVGEGKAAMLYMNWALLEANVGDTESARTLFM
QGMNSRKENSQDVIRLVHVWAGVERKEGNVTKARELYNRALRINSRDYKV
LHAFSSLEQDDGNYEASRELLKKSVRFSSGDLMAIRSLAMLEWKHFAEDG
GVERARKLFAETTRRRGRHASLLRVWAALEEDQGDSDKAERLRILANKRQ
*
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mRNA from alignment at ScGOVlb_425:1814279..1815781-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12855.t1 ID=Gvermi12855.t1|Name=Gvermi12855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:1814279..1815781- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTGCGTCCCGTTCGTGCCAACCCCCAACGACAACTCGGACATCCC
GCCGCTTCCGGTGCTAGCGCAGCTCGAGCTCCGCGCCGGCGATCCGGCCG
CCGCCGCCCGTCTGCTATCTAGGCATCTTTCCGAAACCCCCACTGACGCG
CGTTCATGGATAGAGTACGCAAAAGCGGCGCGAAAGGCCCACGGCCATAA
GCACGCCGCCCAGATACTGCAACGCGCTGTGGGGCACGTCCAGAACGACG
CGTACGTTTGGCATTTTTACGCCAGTTGTGAGGCTGCCGCCTCGGGAAAG
TCTTCCGCCCGCAAGGTGTACAAGCGCGCCTTGGAGAACTGCCCCGACAA
CGCCGTGCTCCTCAGCGCACTGGCCGCTTTGGAAAGCAGTGTCTCCAACT
TTGCCACCGCTGCAAAACTGTTTCAGCGAGCAATTGAAGCCGACATCCAG
GACCCTTACATCTACATGCAGTGGGCCAACATGGAGCTGCGGCGAAGAAA
CTTCTCAAAGGCATCAAGCGTGTTCGAAATGGGCGTGAGAGCGGTGAGGA
AGAGCAAGGCCGCCCCTCTGTACACTGCGTACGCGGGTCACGAAGCCAAG
CGCGGCAAATTTCAACGCGCCCGTTTTCTCTACATGCGTGCCGCGGAGGC
GGACCCCAAGGACAAACTTGTGTGGCACGCGTGGGCGTCCTTGGAGCACC
GCACCGGAAACAATGAGCGCGCCCGACAATTGTTTGAACGTGCGATTGTC
GCAGACCCCTCCTTCCCTTGTAGCTGGCAAGCGTGGGGTTTGCTTGAGGA
AAGAGAGCAGAAATTCAACGCGGCAAGGTGTCTGTACGAAAGGGGTACAA
GGGCTGATCCACACGACCCGCTCAATTGGCAGGCATGGGCGCTTCTGGAG
GCCCGCACAGGGAATGTCACCGAGTCAAGACGCTTGTTCCGAGAGGCTGC
CGACCGTGTCGGCGAGGGAAAAGCAGCCATGCTCTACATGAACTGGGCGC
TCTTGGAAGCAAACGTGGGTGACACTGAAAGTGCCCGAACTCTCTTCATG
CAAGGGATGAATAGTCGCAAAGAGAATTCGCAGGACGTGATTCGACTGGT
GCACGTGTGGGCTGGCGTCGAGCGCAAAGAGGGAAACGTCACCAAAGCCC
GGGAGCTGTACAACCGTGCGCTGCGAATCAACTCACGCGACTACAAAGTT
TTGCACGCGTTCTCCTCGCTGGAGCAGGATGATGGGAATTATGAGGCGTC
GAGGGAGTTGCTGAAAAAGAGCGTGCGGTTTTCTTCTGGCGATTTGATGG
CGATTCGCTCACTTGCCATGCTGGAGTGGAAACATTTTGCTGAGGACGGT
GGCGTTGAACGGGCACGCAAATTGTTTGCGGAGACTACAAGACGGCGTGG
TAGGCATGCCTCGTTGTTGCGCGTTTGGGCGGCGTTGGAAGAAGACCAGG
GAGATAGTGATAAGGCAGAGAGGTTGAGAATACTTGCAAACAAGAGACAG
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1814279..1815781-

>Gvermi12855.t1 ID=Gvermi12855.t1|Name=Gvermi12855.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:1814279..1815781- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTGCGTCCCGTTCGTGCCAACCCCCAACGACAACTCGGACATCCC
GCCGCTTCCGGTGCTAGCGCAGCTCGAGCTCCGCGCCGGCGATCCGGCCG
CCGCCGCCCGTCTGCTATCTAGGCATCTTTCCGAAACCCCCACTGACGCG
CGTTCATGGATAGAGTACGCAAAAGCGGCGCGAAAGGCCCACGGCCATAA
GCACGCCGCCCAGATACTGCAACGCGCTGTGGGGCACGTCCAGAACGACG
CGTACGTTTGGCATTTTTACGCCAGTTGTGAGGCTGCCGCCTCGGGAAAG
TCTTCCGCCCGCAAGGTGTACAAGCGCGCCTTGGAGAACTGCCCCGACAA
CGCCGTGCTCCTCAGCGCACTGGCCGCTTTGGAAAGCAGTGTCTCCAACT
TTGCCACCGCTGCAAAACTGTTTCAGCGAGCAATTGAAGCCGACATCCAG
GACCCTTACATCTACATGCAGTGGGCCAACATGGAGCTGCGGCGAAGAAA
CTTCTCAAAGGCATCAAGCGTGTTCGAAATGGGCGTGAGAGCGGTGAGGA
AGAGCAAGGCCGCCCCTCTGTACACTGCGTACGCGGGTCACGAAGCCAAG
CGCGGCAAATTTCAACGCGCCCGTTTTCTCTACATGCGTGCCGCGGAGGC
GGACCCCAAGGACAAACTTGTGTGGCACGCGTGGGCGTCCTTGGAGCACC
GCACCGGAAACAATGAGCGCGCCCGACAATTGTTTGAACGTGCGATTGTC
GCAGACCCCTCCTTCCCTTGTAGCTGGCAAGCGTGGGGTTTGCTTGAGGA
AAGAGAGCAGAAATTCAACGCGGCAAGGTGTCTGTACGAAAGGGGTACAA
GGGCTGATCCACACGACCCGCTCAATTGGCAGGCATGGGCGCTTCTGGAG
GCCCGCACAGGGAATGTCACCGAGTCAAGACGCTTGTTCCGAGAGGCTGC
CGACCGTGTCGGCGAGGGAAAAGCAGCCATGCTCTACATGAACTGGGCGC
TCTTGGAAGCAAACGTGGGTGACACTGAAAGTGCCCGAACTCTCTTCATG
CAAGGGATGAATAGTCGCAAAGAGAATTCGCAGGACGTGATTCGACTGGT
GCACGTGTGGGCTGGCGTCGAGCGCAAAGAGGGAAACGTCACCAAAGCCC
GGGAGCTGTACAACCGTGCGCTGCGAATCAACTCACGCGACTACAAAGTT
TTGCACGCGTTCTCCTCGCTGGAGCAGGATGATGGGAATTATGAGGCGTC
GAGGGAGTTGCTGAAAAAGAGCGTGCGGTTTTCTTCTGGCGATTTGATGG
CGATTCGCTCACTTGCCATGCTGGAGTGGAAACATTTTGCTGAGGACGGT
GGCGTTGAACGGGCACGCAAATTGTTTGCGGAGACTACAAGACGGCGTGG
TAGGCATGCCTCGTTGTTGCGCGTTTGGGCGGCGTTGGAAGAAGACCAGG
GAGATAGTGATAAGGCAGAGAGGTTGAGAATACTTGCAAACAAGAGACAG
TGA
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