Gvermi12727.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12727.t1
Unique NameGvermi12727.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length145
Homology
BLAST of Gvermi12727.t1 vs. uniprot
Match: A0A2V3IH51_9FLOR (U1 small nuclear ribonucleoprotein C-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH51_9FLOR)

HSP 1 Score: 139 bits (350), Expect = 3.870e-39
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLIRPTYGVPPAVK 77
            MGKCYCDYCDVFLTNDSVAVRKQHN+GNRHK+NVCEYYRQYIG +LQ+QID IVQQFE +VANGL+  TY +PP  K
Sbjct:    1 MGKCYCDYCDVFLTNDSVAVRKQHNDGNRHKYNVCEYYRQYIGHRLQRQIDAIVQQFEADVANGLVHATYALPPIAK 77          
BLAST of Gvermi12727.t1 vs. uniprot
Match: R7Q753_CHOCR (Similar to putative C-type U1 snRNP n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q753_CHOCR)

HSP 1 Score: 131 bits (329), Expect = 1.600e-36
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLIRPTYGVP 73
            MGKCYCDYCDVFLTNDSVAVRKQHN+GNRHK+NVCEYYRQYIG+QLQ+QID IV  FE  VA+GL+ P+Y +P
Sbjct:    1 MGKCYCDYCDVFLTNDSVAVRKQHNDGNRHKYNVCEYYRQYIGQQLQEQIDLIVHHFEQRVASGLLMPSYALP 73          
BLAST of Gvermi12727.t1 vs. uniprot
Match: A0A7S2ZQ39_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZQ39_9RHOD)

HSP 1 Score: 115 bits (287), Expect = 2.900e-29
Identity = 51/104 (49.04%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLIRPTYGVPPA-VKAHMVLQKAQENGDVPKHLDHPTENQP 103
            MGK YCDYCDV+LT+DS AVRKQHN+GNRHK   CEYY++Y+GK+ Q++ID+++++FE+ V +GL+ PT+G   A VK  +  +   E  ++P  +  P +  P
Sbjct:  111 MGKYYCDYCDVYLTHDSPAVRKQHNDGNRHKQAACEYYKEYVGKRTQKEIDRVIEEFEVKVMSGLVVPTFGFAEAPVKVAVPGEAGAEAAEMPSAIGDPNQTTP 214          
BLAST of Gvermi12727.t1 vs. uniprot
Match: M2XIJ0_GALSU (U1 small nuclear ribonucleoprotein C n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XIJ0_GALSU)

HSP 1 Score: 112 bits (280), Expect = 2.910e-29
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLIRPTYGVPPAVKAHMVL 82
            MGK YCDYCDV+LT+DS AVRKQHN+GNRH+ N  EYYRQ+IG+ LQQQID +V  FE  VA GL+ PTYG    V++   L
Sbjct:    1 MGKYYCDYCDVYLTHDSPAVRKQHNDGNRHRMNFAEYYRQFIGESLQQQIDAVVYDFERRVALGLVVPTYGFATTVQSSSTL 82          
BLAST of Gvermi12727.t1 vs. uniprot
Match: A0A7S0G6I6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G6I6_9RHOD)

HSP 1 Score: 109 bits (272), Expect = 3.350e-27
Identity = 45/75 (60.00%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLIRPTYGVPPA 75
            MGK YCDYCDV+LT+DS AVRKQHN+GNRHK   CEYY++Y+GK+ Q++ID+++ +FE+ V +GL+ PT+G   A
Sbjct:   34 MGKYYCDYCDVYLTHDSPAVRKQHNDGNRHKQAACEYYKEYVGKRTQKEIDRVIDEFEVKVMSGLVVPTFGFAEA 108          
BLAST of Gvermi12727.t1 vs. uniprot
Match: A0A6A5HLE2_CAERE (U1 small nuclear ribonucleoprotein C n=4 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A6A5HLE2_CAERE)

HSP 1 Score: 73.2 bits (178), Expect = 6.870e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLI-RPTYGVP 73
            M K YCDYCD FLT+DS+  RK HNEG +HK  V  +Y++++  Q Q+ +DQ  Q F+ N  +G I R T G+P
Sbjct:    1 MPKYYCDYCDAFLTHDSLKGRKTHNEGRKHKDAVRGFYQKWLEAQAQKMVDQTAQAFQQNRMHGAIPRTTLGMP 74          
BLAST of Gvermi12727.t1 vs. uniprot
Match: A0A0K9RRF2_SPIOL (U1 small nuclear ribonucleoprotein C n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RRF2_SPIOL)

HSP 1 Score: 72.4 bits (176), Expect = 2.230e-13
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQ-------FEINVANGLIRPTYGVPPAVKAHMVL 82
            M + YCDYCD +LT+DS +VRKQHNEG +HK NV  YY+Q+  +Q Q  IDQ +++       F+I  A    RP +  PP + A + +
Sbjct:    1 MPRYYCDYCDTYLTHDSPSVRKQHNEGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLSGQGAFQIGAAYAAWRPGFR-PPLLPAPLPI 88          
BLAST of Gvermi12727.t1 vs. uniprot
Match: A0A2P4VXM5_CAERE (U1 small nuclear ribonucleoprotein C n=3 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A2P4VXM5_CAERE)

HSP 1 Score: 73.2 bits (178), Expect = 2.410e-13
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLI-RPTYGVP 73
            M K YCDYCD FLT+DS+  RK HNEG +HK  V  +Y++++  Q Q+ +DQ  Q F+ N  +G I R T G+P
Sbjct:   58 MPKYYCDYCDAFLTHDSLKGRKTHNEGRKHKDAVRGFYQKWLEAQAQKMVDQTAQAFQQNRMHGAIPRTTLGMP 131          
BLAST of Gvermi12727.t1 vs. uniprot
Match: E3NE30_CAERE (U1 small nuclear ribonucleoprotein C n=2 Tax=Caenorhabditis remanei TaxID=31234 RepID=E3NE30_CAERE)

HSP 1 Score: 73.6 bits (179), Expect = 2.670e-13
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLI-RPTYGVP 73
            M K YCDYCD FLT+DS+  RK HNEG +HK  V  +Y++++  Q Q+ +DQ  Q F+ N  +G I R T G+P
Sbjct:   82 MPKYYCDYCDAFLTHDSLKGRKTHNEGRKHKDAVRGFYQKWLESQAQKMVDQTAQAFQQNRMHGAIPRTTLGMP 155          
BLAST of Gvermi12727.t1 vs. uniprot
Match: A0A261BXD1_9PELO (Matrin-type domain-containing protein (Fragment) n=1 Tax=Caenorhabditis latens TaxID=1503980 RepID=A0A261BXD1_9PELO)

HSP 1 Score: 73.2 bits (178), Expect = 3.430e-13
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQIDQIVQQFEINVANGLI-RPTYGVP 73
            M K YCDYCD FLT+DS+  RK HNEG +HK  V  +Y++++  Q Q+ +DQ  Q F+ N  +G I R T G+P
Sbjct:   77 MPKYYCDYCDAFLTHDSLKGRKTHNEGRKHKDAVRGFYQKWLEAQAQKMVDQTAQAFQQNRMHGAIPRTTLGMP 150          
The following BLAST results are available for this feature:
BLAST of Gvermi12727.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IH51_9FLOR3.870e-3980.52U1 small nuclear ribonucleoprotein C-2 n=1 Tax=Gra... [more]
R7Q753_CHOCR1.600e-3679.45Similar to putative C-type U1 snRNP n=1 Tax=Chondr... [more]
A0A7S2ZQ39_9RHOD2.900e-2949.04Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
M2XIJ0_GALSU2.910e-2963.41U1 small nuclear ribonucleoprotein C n=1 Tax=Galdi... [more]
A0A7S0G6I6_9RHOD3.350e-2760.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A6A5HLE2_CAERE6.870e-1448.65U1 small nuclear ribonucleoprotein C n=4 Tax=Caeno... [more]
A0A0K9RRF2_SPIOL2.230e-1343.82U1 small nuclear ribonucleoprotein C n=1 Tax=Spina... [more]
A0A2P4VXM5_CAERE2.410e-1348.65U1 small nuclear ribonucleoprotein C n=3 Tax=Caeno... [more]
E3NE30_CAERE2.670e-1348.65U1 small nuclear ribonucleoprotein C n=2 Tax=Caeno... [more]
A0A261BXD1_9PELO3.430e-1348.65Matrin-type domain-containing protein (Fragment) n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 4.2E-7
score: 39.6
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..144
e-value: 1.9E-27
score: 95.1
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..110
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..60
e-value: 9.1E-22
score: 78.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..144
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..38
e-value: 6.6E-15
score: 54.6
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 10.445407
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1227193..1227627 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12727.t1Gvermi12727.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1227193..1227627 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12727.t1 ID=Gvermi12727.t1|Name=Gvermi12727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=145bp
MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQI
DQIVQQFEINVANGLIRPTYGVPPAVKAHMVLQKAQENGDVPKHLDHPTE
NQPHIPQNASQALQQRTVPTQLSNNQSRSQATDTQSPVPVIEPK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR017340U1_snRNP-C
IPR013085U1-CZ_Znf_C2H2
IPR000690Matrin/U1-C_Znf_C2H2
IPR036236Znf_C2H2_sf