Gvermi12388.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12388.t1
Unique NameGvermi12388.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length125
Homology
BLAST of Gvermi12388.t1 vs. uniprot
Match: Q7XY88_GRIJA (Histone H2A (Fragment) n=3 Tax=Rhodymeniophycidae TaxID=2045261 RepID=Q7XY88_GRIJA)

HSP 1 Score: 229 bits (583), Expect = 2.660e-75
Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 0
Query:    1 MSSKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQEV 124
            MS K KKTSQSRSSKAGLQFPVGRI RFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLL GVTIASGGVLPNIHQVLMPRKK+KGDASQEV
Sbjct:   31 MSGKVKKTSQSRSSKAGLQFPVGRIDRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHQVLMPRKKSKGDASQEV 154          
BLAST of Gvermi12388.t1 vs. uniprot
Match: A0A2V3J1H0_9FLOR (Histone H2A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H0_9FLOR)

HSP 1 Score: 222 bits (566), Expect = 3.600e-73
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 0
Query:    6 KKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQEV 124
            KK +QSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLL  VTIASGGVLPNIHQVLMP KK+KGDASQEV
Sbjct:    4 KKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPHKKSKGDASQEV 122          
BLAST of Gvermi12388.t1 vs. uniprot
Match: R7QQ41_CHOCR (Histone H2A n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ41_CHOCR)

HSP 1 Score: 220 bits (560), Expect = 3.600e-72
Identity = 112/124 (90.32%), Postives = 117/124 (94.35%), Query Frame = 0
Query:    1 MSSKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQEV 124
            +S K KKTSQ+RSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLL  VTIASGGV+PNIH VLMPRKK+K D SQEV
Sbjct:    5 ISKKVKKTSQTRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGSVTIASGGVIPNIHTVLMPRKKSKSDPSQEV 128          
BLAST of Gvermi12388.t1 vs. uniprot
Match: A0A7S0G427_9RHOD (Histone H2A n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G427_9RHOD)

HSP 1 Score: 207 bits (527), Expect = 3.870e-67
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQE 123
            KTKK++ SR+ KAGLQFPVGRIHR LRKGGYADRVGAGAPVY+AAV+EYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIA+GGVLPNIH VL P+KK   DASQE
Sbjct:    8 KTKKSAVSRTKKAGLQFPVGRIHRHLRKGGYADRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIAAGGVLPNIHSVLTPKKKEAKDASQE 127          
BLAST of Gvermi12388.t1 vs. uniprot
Match: A0A5J4Z1G0_PORPP (Histone H2A n=2 Tax=Porphyridiaceae TaxID=2799 RepID=A0A5J4Z1G0_PORPP)

HSP 1 Score: 205 bits (522), Expect = 2.100e-66
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQEV 124
            K +K + SR+ KAGLQFPVGRIHR L+KGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRH+QLAVRNDEELNKLLSGVTIA+GGVLPNIH VLMP+KK K DASQE+
Sbjct:    7 KERKAAMSRTKKAGLQFPVGRIHRHLKKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLSGVTIAAGGVLPNIHAVLMPKKKGK-DASQEL 126          
BLAST of Gvermi12388.t1 vs. uniprot
Match: A0A7J7IHZ2_9RHOD (Histone H2A n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHZ2_9RHOD)

HSP 1 Score: 196 bits (499), Expect = 5.030e-63
Identity = 94/111 (84.68%), Postives = 107/111 (96.40%), Query Frame = 0
Query:    9 SQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGD 119
            ++SRSSKAGLQFPVGR+HR+LR GGYA+R+GAGAPVY+AAVMEYLTAEVLELAGNAARDNKKTRI+PRHIQLA+RNDEELNKLL+ VTIASGGVLPNIH VL+P+KK KG+
Sbjct:    7 AKSRSSKAGLQFPVGRVHRYLRDGGYAERIGAGAPVYLAAVMEYLTAEVLELAGNAARDNKKTRIVPRHIQLAIRNDEELNKLLANVTIASGGVLPNIHAVLLPKKKGKGE 117          
BLAST of Gvermi12388.t1 vs. uniprot
Match: M1V984_CYAM1 (Histone H2A n=2 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V984_CYAM1)

HSP 1 Score: 197 bits (501), Expect = 5.170e-62
Identity = 95/111 (85.59%), Postives = 107/111 (96.40%), Query Frame = 0
Query:    9 SQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGD 119
            ++SRSSKAGLQFPVGR+HR+LR GGYA+R+GAGAPVY+AAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLA+RNDEELNKLL+ VTIASGGVLPNIH VL+P+KK KG+
Sbjct:  101 AKSRSSKAGLQFPVGRVHRYLRDGGYAERIGAGAPVYLAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLADVTIASGGVLPNIHAVLLPKKKAKGE 211          
BLAST of Gvermi12388.t1 vs. uniprot
Match: C3ZNL5_BRAFL (Histone H2A n=6 Tax=Branchiostoma TaxID=7737 RepID=C3ZNL5_BRAFL)

HSP 1 Score: 194 bits (492), Expect = 7.360e-62
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTK 117
            K +  ++SRSS+AGLQFPVGR+HRFLRKG YA+RVGAGAPVY+AAV+EYLTAE+LELAGNAARDNKKTRIIPRH+QLAVRNDEELNKLLSGVTIA GGVLPNIH VL+P+K +K
Sbjct:    9 KARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIHAVLLPKKTSK 122          
BLAST of Gvermi12388.t1 vs. uniprot
Match: C3Z7D8_BRAFL (Histone H2A n=8 Tax=Branchiostoma TaxID=7737 RepID=C3Z7D8_BRAFL)

HSP 1 Score: 192 bits (487), Expect = 4.400e-61
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRK 114
            K +  ++SRSS+AGLQFPVGR+HRFLRKG YA+RVGAGAPVY+AAV+EYLTAE+LELAGNAARDNKKTRIIPRH+QLAVRNDEELNKLLSGVTIA GGVLPNIH VL+P+K
Sbjct:    9 KARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIHAVLLPKK 119          
BLAST of Gvermi12388.t1 vs. uniprot
Match: A0A210PR34_MIZYE (Histone H2A n=3 Tax=Protostomia TaxID=33317 RepID=A0A210PR34_MIZYE)

HSP 1 Score: 191 bits (485), Expect = 1.150e-60
Identity = 97/121 (80.17%), Postives = 109/121 (90.08%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKK--TKGDASQ 122
            KTK  ++SRSS+AGLQFPVGRIHR LRKG YA+RVGAGAPVY+AAV+EYL AEVLELAGNAARDNKK+RIIPRH+QLA+RNDEELNKLLSGVTIA GGVLPNI  VL+P+K   TKG +SQ
Sbjct:    9 KTKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTGATKGKSSQ 129          
The following BLAST results are available for this feature:
BLAST of Gvermi12388.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XY88_GRIJA2.660e-7595.16Histone H2A (Fragment) n=3 Tax=Rhodymeniophycidae ... [more]
A0A2V3J1H0_9FLOR3.600e-7394.96Histone H2A n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
R7QQ41_CHOCR3.600e-7290.32Histone H2A n=2 Tax=Chondrus crispus TaxID=2769 Re... [more]
A0A7S0G427_9RHOD3.870e-6787.50Histone H2A n=1 Tax=Rhodosorus marinus TaxID=10192... [more]
A0A5J4Z1G0_PORPP2.100e-6686.78Histone H2A n=2 Tax=Porphyridiaceae TaxID=2799 Rep... [more]
A0A7J7IHZ2_9RHOD5.030e-6384.68Histone H2A n=1 Tax=Cyanidiococcus yangmingshanens... [more]
M1V984_CYAM15.170e-6285.59Histone H2A n=2 Tax=Cyanidioschyzon merolae (strai... [more]
C3ZNL5_BRAFL7.360e-6282.46Histone H2A n=6 Tax=Branchiostoma TaxID=7737 RepID... [more]
C3Z7D8_BRAFL4.400e-6183.78Histone H2A n=8 Tax=Branchiostoma TaxID=7737 RepID... [more]
A0A210PR34_MIZYE1.150e-6080.17Histone H2A n=3 Tax=Protostomia TaxID=33317 RepID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 8..30
score: 70.77
coord: 52..65
score: 90.54
coord: 94..112
score: 71.68
coord: 37..52
score: 81.73
coord: 66..80
score: 81.4
IPR002119Histone H2ASMARTSM00414h2a4coord: 2..117
e-value: 3.0E-78
score: 276.0
IPR002119Histone H2APANTHERPTHR23430HISTONE H2Acoord: 3..119
IPR002119Histone H2ACDDcd00074H2Acoord: 2..114
e-value: 1.13277E-73
score: 212.966
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 3..83
e-value: 8.0E-18
score: 65.1
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 1..123
e-value: 1.1E-64
score: 218.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 3..121
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 86..118
e-value: 3.3E-19
score: 68.3
NoneNo IPR availablePANTHERPTHR23430:SF222HISTONE H2Acoord: 3..119
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 16..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4464212..4464586 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12388.t1Gvermi12388.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4464212..4464586 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12388.t1 ID=Gvermi12388.t1|Name=Gvermi12388.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=125bp
MSSKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVM
EYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASG
GVLPNIHQVLMPRKKTKGDASQEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
IPR032454Histone_H2A_C
IPR032458Histone_H2A_CS