Gvermi12281.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12281.t1
Unique NameGvermi12281.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length168
Homology
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BLAST of Gvermi12281.t1 vs. uniprot
Match: A0A2V3J089_9FLOR (CST complex subunit STN1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J089_9FLOR)

HSP 1 Score: 211 bits (538), Expect = 1.520e-67
Identity = 95/165 (57.58%), Postives = 127/165 (76.97%), Query Frame = 0 
Query:    1 MNSFYDNHLNWGLDPLFHAHVKMFNSMLDKLTRPKSHGTNAVAFYQYAPNLPARPLRLVRIAGIVVYLAHHTKFSRYLVDDGSAVARCMLWKDDTQPSSPIDLGDFVNIMGRIEWRQGVLLVIVTHQHVPSWPYEELSWWVEVQQAHQQVYSEPLSITFDQECSQ 165
            M+ FY NHLNW LDPLFH HVK+FN ML++   P + G N++ FY+YAPNLPARPLRLV IAGIVVY+ HH+KFSRY++DDGS+ ARC+LW +DT+P++ + LGDFV + GR+EW++ +LLV+V  Q   + PY EL WW++V+ AH QVYS+P  +    E +Q
Sbjct:    1 MHHFYANHLNWALDPLFHVHVKLFNRMLEQAIPPATDGNNSITFYRYAPNLPARPLRLVHIAGIVVYVNHHSKFSRYILDDGSSTARCLLW-NDTEPAAQLALGDFVEVRGRLEWQKQILLVVVQSQQSLTSPYAELDWWLQVRTAHHQVYSQPFEMFLTPEQTQ 164
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BLAST of Gvermi12281.t1 vs. uniprot
Match: R7QFA4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFA4_CHOCR)

HSP 1 Score: 57.8 bits (138), Expect = 5.770e-8
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:   11 WGLDPLFHAHVKMFNSMLDKLTRPKSHGTNAVAFYQYAPNLPARPLRLVRIAGIVVYLAHHTKFSR 76
            WGLDPLFH HVK+F   L ++   +    ++V F  +    P RP+RL  +AG+VV+++ H K  R
Sbjct:   11 WGLDPLFHVHVKLFAGSLGRMKPGQWGDGDSVYFSSFVRGYP-RPVRLASLAGLVVFISKHQKVMR 75
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BLAST of Gvermi12281.t1 vs. uniprot
Match: A0A8H7QV35_9FUNG (OB domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QV35_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 1.770e-7
Identity = 38/104 (36.54%), Postives = 50/104 (48.08%), Query Frame = 0 
Query:   11 WGLDPLFHAHVKMFNSMLDKLTRPKSHGTNAVAFYQYAPNLPARPLRLVRIAGIVVYLAHHTKFSRYLVDDGSAVARCMLWKDDTQPSS-PIDLGDFVNIMGRI 113
            +GLDPLFH HVK+F   + KL R           Y +        +RLV I GIVV          Y VDD SA   C L+ D+   +  P++LG  V + G+I
Sbjct:    6 FGLDPLFHTHVKLFIKDVLKLERVPDVSLEVFQLYDHV-------IRLVEICGIVVAFESSGGNIIYTVDDASATISCCLFSDNMDVNYVPLELGTAVRVRGKI 102
The following BLAST results are available for this feature:
BLAST of Gvermi12281.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J089_9FLOR1.520e-6757.58CST complex subunit STN1 n=1 Tax=Gracilariopsis ch... [more]
R7QFA4_CHOCR5.770e-840.91Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A8H7QV35_9FUNG1.770e-736.54OB domain-containing protein n=1 Tax=Mucor saturni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 6..157
e-value: 1.4E-21
score: 78.4
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typePFAMPF01336tRNA_anti-codoncoord: 59..124
e-value: 1.1E-7
score: 31.8
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 55..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4086190..4086781 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12281.t1Gvermi12281.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4086190..4086781 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12281.t1 ID=Gvermi12281.t1|Name=Gvermi12281.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=168bp
MNSFYDNHLNWGLDPLFHAHVKMFNSMLDKLTRPKSHGTNAVAFYQYAPN
LPARPLRLVRIAGIVVYLAHHTKFSRYLVDDGSAVARCMLWKDDTQPSSP
IDLGDFVNIMGRIEWRQGVLLVIVTHQHVPSWPYEELSWWVEVQQAHQQV
YSEPLSITFDQECSQKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004365NA-bd_OB_tRNA
IPR012340NA-bd_OB-fold