Gvermi12281.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12281.t1
Unique NameGvermi12281.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4086190..4086781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP60488
Preferred nameOBFC1
PFAMsSTN1_2,Stn1,tRNA_anti-codon
Max annot lvl33208|Metazoa
GOsGO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0001650,GO:0001944,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005856,GO:0006139,GO:0006259,GO:0006275,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010639,GO:0010833,GO:0016043,GO:0016233,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032501,GO:0032502,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0034641,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0045111,GO:0045740,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098847,GO:1901360,GO:1901363,GO:1904356,GO:1904357,GO:1990879,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
Evalue2.89e-11
EggNOG OGsCOG5235@1|root,KOG3108@2759|Eukaryota,38IVJ@33154|Opisthokonta,3BHFU@33208|Metazoa
DescriptionComponent of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12281Gvermi12281Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4086190..4086781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12281.t1Gvermi12281.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4086190..4086781 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12281.t1.start1Gvermi12281.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4086190..4086192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12281.t1.CDS1Gvermi12281.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4086190..4086408 +
Gvermi12281.t1.CDS2Gvermi12281.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4086497..4086781 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12281.t1.exon1Gvermi12281.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4086190..4086408 +
Gvermi12281.t1.exon2Gvermi12281.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4086497..4086781 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12281.t1.intron1Gvermi12281.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4086409..4086496 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12281.t1.stop1Gvermi12281.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4086779..4086781 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12281.t1 ID=Gvermi12281.t1|Name=Gvermi12281.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=168bp
MNSFYDNHLNWGLDPLFHAHVKMFNSMLDKLTRPKSHGTNAVAFYQYAPN
LPARPLRLVRIAGIVVYLAHHTKFSRYLVDDGSAVARCMLWKDDTQPSSP
IDLGDFVNIMGRIEWRQGVLLVIVTHQHVPSWPYEELSWWVEVQQAHQQV
YSEPLSITFDQECSQKS*
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spliced messenger RNA

>Gvermi12281.t1 ID=Gvermi12281.t1|Name=Gvermi12281.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp|location=Sequence derived from alignment at ScGOVlb_3404:4086190..4086781+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCTTTTATGACAACCATCTCAACTGGGGTTTGGACCCCCTGTT
TCATGCGCATGTTAAAATGTTCAATAGCATGCTTGACAAGCTAACACGCC
CCAAGAGCCATGGCACCAATGCTGTTGCTTTCTACCAGTACGCCCCCAAC
TTACCAGCCCGCCCTCTTCGTTTGGTGCGTATAGCGGGCATTGTCGTTTA
CCTAGCTCACCACACCAAATTTTCCAGATACCTCGTGGACGATGGCAGTG
CAGTAGCCCGTTGCATGCTTTGGAAAGATGACACACAACCATCTTCCCCC
ATAGACCTTGGCGACTTTGTCAACATCATGGGTCGCATTGAATGGCGTCA
AGGAGTTTTACTTGTTATTGTTACTCACCAGCATGTTCCATCTTGGCCAT
ACGAGGAACTATCGTGGTGGGTTGAGGTCCAACAGGCCCACCAGCAAGTT
TACTCTGAACCATTAAGCATTACTTTTGATCAGGAGTGCAGTCAGAAGTC
ATGA
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protein sequence of Gvermi12281.t1

>Gvermi12281.t1 ID=Gvermi12281.t1|Name=Gvermi12281.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=168bp
MNSFYDNHLNWGLDPLFHAHVKMFNSMLDKLTRPKSHGTNAVAFYQYAPN
LPARPLRLVRIAGIVVYLAHHTKFSRYLVDDGSAVARCMLWKDDTQPSSP
IDLGDFVNIMGRIEWRQGVLLVIVTHQHVPSWPYEELSWWVEVQQAHQQV
YSEPLSITFDQECSQKS*
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mRNA from alignment at ScGOVlb_3404:4086190..4086781+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12281.t1 ID=Gvermi12281.t1|Name=Gvermi12281.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=592bp|location=Sequence derived from alignment at ScGOVlb_3404:4086190..4086781+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTCCTTTTATGACAACCATCTCAACTGGGGTTTGGACCCCCTGTT
TCATGCGCATGTTAAAATGTTCAATAGCATGCTTGACAAGCTAACACGCC
CCAAGAGCCATGGCACCAATGCTGTTGCTTTCTACCAGTACGCCCCCAAC
TTACCAGCCCGCCCTCTTCGTTTGGTGCGTATAGCGGGCATTGTCGTTTA
CCTAGCTCACCACACCAAAGTACGTCTCTCTACTGCTCGAGCAGCGAGGA
AACCCTCCTGCTCTCACAAGAACAATTGTCTAATCTCATCGGTGTTTGTG
TCCTAAGTTTTCCAGATACCTCGTGGACGATGGCAGTGCAGTAGCCCGTT
GCATGCTTTGGAAAGATGACACACAACCATCTTCCCCCATAGACCTTGGC
GACTTTGTCAACATCATGGGTCGCATTGAATGGCGTCAAGGAGTTTTACT
TGTTATTGTTACTCACCAGCATGTTCCATCTTGGCCATACGAGGAACTAT
CGTGGTGGGTTGAGGTCCAACAGGCCCACCAGCAAGTTTACTCTGAACCA
TTAAGCATTACTTTTGATCAGGAGTGCAGTCAGAAGTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4086190..4086781+

>Gvermi12281.t1 ID=Gvermi12281.t1|Name=Gvermi12281.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=504bp|location=Sequence derived from alignment at ScGOVlb_3404:4086190..4086781+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTCCTTTTATGACAACCATCTCAACTGGGGTTTGGACCCCCTGTT
TCATGCGCATGTTAAAATGTTCAATAGCATGCTTGACAAGCTAACACGCC
CCAAGAGCCATGGCACCAATGCTGTTGCTTTCTACCAGTACGCCCCCAAC
TTACCAGCCCGCCCTCTTCGTTTGGTGCGTATAGCGGGCATTGTCGTTTA
CCTAGCTCACCACACCAAATTTTCCAGATACCTCGTGGACGATGGCAGTG
CAGTAGCCCGTTGCATGCTTTGGAAAGATGACACACAACCATCTTCCCCC
ATAGACCTTGGCGACTTTGTCAACATCATGGGTCGCATTGAATGGCGTCA
AGGAGTTTTACTTGTTATTGTTACTCACCAGCATGTTCCATCTTGGCCAT
ACGAGGAACTATCGTGGTGGGTTGAGGTCCAACAGGCCCACCAGCAAGTT
TACTCTGAACCATTAAGCATTACTTTTGATCAGGAGTGCAGTCAGAAGTC
ATGA
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