Gvermi12276.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12276.t1
Unique NameGvermi12276.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length123
Homology
BLAST of Gvermi12276.t1 vs. uniprot
Match: A0A2V3J1H0_9FLOR (Histone H2A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H0_9FLOR)

HSP 1 Score: 236 bits (602), Expect = 1.070e-78
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0
Query:    1 MAPKKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKGDASQEV 122
            MAPKKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMP KK+KGDASQEV
Sbjct:    1 MAPKKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPHKKSKGDASQEV 122          
BLAST of Gvermi12276.t1 vs. uniprot
Match: Q7XY88_GRIJA (Histone H2A (Fragment) n=3 Tax=Rhodymeniophycidae TaxID=2045261 RepID=Q7XY88_GRIJA)

HSP 1 Score: 222 bits (566), Expect = 9.540e-73
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0
Query:    4 KKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKGDASQEV 122
            KK +QSRSSKAGLQFPVGRI RFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHQVLMPRKK+KGDASQEV
Sbjct:   36 KKTSQSRSSKAGLQFPVGRIDRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHQVLMPRKKSKGDASQEV 154          
BLAST of Gvermi12276.t1 vs. uniprot
Match: R7QQ41_CHOCR (Histone H2A n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ41_CHOCR)

HSP 1 Score: 218 bits (554), Expect = 2.730e-71
Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = 0
Query:    4 KKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKGDASQEV 122
            KK +Q+RSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLLG+VTIASGGV+PNIH VLMPRKK+K D SQEV
Sbjct:   10 KKTSQTRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGSVTIASGGVIPNIHTVLMPRKKSKSDPSQEV 128          
BLAST of Gvermi12276.t1 vs. uniprot
Match: A0A7J7IHZ2_9RHOD (Histone H2A n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHZ2_9RHOD)

HSP 1 Score: 207 bits (526), Expect = 3.550e-67
Identity = 100/117 (85.47%), Postives = 111/117 (94.87%), Query Frame = 0
Query:    1 MAPKKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKGD 117
            MAPK  A+SRSSKAGLQFPVGR+HR+LR GGYA+R+GAGAPVY+AAVMEYLTAEVLELAGNAARDNKKTRI+PRHIQLA+RNDEELNKLL NVTIASGGVLPNIH VL+P+KK KG+
Sbjct:    1 MAPKGKAKSRSSKAGLQFPVGRVHRYLRDGGYAERIGAGAPVYLAAVMEYLTAEVLELAGNAARDNKKTRIVPRHIQLAIRNDEELNKLLANVTIASGGVLPNIHAVLLPKKKGKGE 117          
BLAST of Gvermi12276.t1 vs. uniprot
Match: A0A5J4Z1G0_PORPP (Histone H2A n=2 Tax=Porphyridiaceae TaxID=2799 RepID=A0A5J4Z1G0_PORPP)

HSP 1 Score: 205 bits (522), Expect = 1.940e-66
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0
Query:    1 MAPK-----KAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKGDASQEV 122
            MAPK     KAA SR+ KAGLQFPVGRIHR L+KGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRH+QLAVRNDEELNKLL  VTIA+GGVLPNIH VLMP+KK K DASQE+
Sbjct:    1 MAPKDAKERKAAMSRTKKAGLQFPVGRIHRHLKKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLSGVTIAAGGVLPNIHAVLMPKKKGK-DASQEL 126          
BLAST of Gvermi12276.t1 vs. uniprot
Match: M1V984_CYAM1 (Histone H2A n=2 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V984_CYAM1)

HSP 1 Score: 207 bits (526), Expect = 7.550e-66
Identity = 101/117 (86.32%), Postives = 112/117 (95.73%), Query Frame = 0
Query:    1 MAPKKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKGD 117
            MAPK  A+SRSSKAGLQFPVGR+HR+LR GGYA+R+GAGAPVY+AAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLA+RNDEELNKLL +VTIASGGVLPNIH VL+P+KKAKG+
Sbjct:   95 MAPKGKAKSRSSKAGLQFPVGRVHRYLRDGGYAERIGAGAPVYLAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLADVTIASGGVLPNIHAVLLPKKKAKGE 211          
BLAST of Gvermi12276.t1 vs. uniprot
Match: A0A7S0G427_9RHOD (Histone H2A n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G427_9RHOD)

HSP 1 Score: 202 bits (513), Expect = 4.870e-65
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 0
Query:    4 KKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKGDASQE 121
            KK+A SR+ KAGLQFPVGRIHR LRKGGYADRVGAGAPVY+AAV+EYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLL  VTIA+GGVLPNIH VL P+KK   DASQE
Sbjct:   10 KKSAVSRTKKAGLQFPVGRIHRHLRKGGYADRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIAAGGVLPNIHSVLTPKKKEAKDASQE 127          
BLAST of Gvermi12276.t1 vs. uniprot
Match: A0A0G2DVQ8_9EURO (Histone H2A n=5 Tax=saccharomyceta TaxID=716545 RepID=A0A0G2DVQ8_9EURO)

HSP 1 Score: 196 bits (497), Expect = 1.520e-62
Identity = 98/119 (82.35%), Postives = 109/119 (91.60%), Query Frame = 0
Query:    5 KAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAK-GDASQEV 122
            K+AQSRSSKAGL FPVGR+HR LRKG YA RVGAGAPVY+AAV+EYL AE+LELAGNAARDNKKTRIIPRH+QLA+RNDEELNKLLG+VTIA GGVLPNIHQ L+P+K AK G ASQE+
Sbjct:   14 KSAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKPGKASQEL 132          
BLAST of Gvermi12276.t1 vs. uniprot
Match: A0A075B1L3_ROZAC (Histone H2A n=3 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B1L3_ROZAC)

HSP 1 Score: 196 bits (497), Expect = 1.680e-62
Identity = 93/115 (80.87%), Postives = 107/115 (93.04%), Query Frame = 0
Query:    7 AQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKGDASQE 121
            A+SRSSKAGLQFPVGR+HRFLRKG YA RVGAGAPVY+AAV+EYLTAE+LELAGNAARDNKK+RI+PRH+QLA+RNDEELNKLLGNVTIASGGVLPNIH+VL+P+K    +A  +
Sbjct:   17 AKSRSSKAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIVPRHLQLAIRNDEELNKLLGNVTIASGGVLPNIHEVLVPKKSKSDNAGSQ 131          
BLAST of Gvermi12276.t1 vs. uniprot
Match: A0A0D1X3S4_EXOME (Histone H2A n=27 Tax=Eukaryota TaxID=2759 RepID=A0A0D1X3S4_EXOME)

HSP 1 Score: 194 bits (494), Expect = 4.360e-62
Identity = 97/119 (81.51%), Postives = 109/119 (91.60%), Query Frame = 0
Query:    5 KAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPRKKAKG-DASQEV 122
            K+AQSRSSKAGL FPVGR+HR LRKG YA RVGAGAPVY+AAV+EYL AE+LELAGNAARDNKKTRIIPRH+QLA+RNDEELNKLLG+VTIA GGVLPNIHQ L+P+K AKG + SQE+
Sbjct:   14 KSAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTAKGKNPSQEL 132          
The following BLAST results are available for this feature:
BLAST of Gvermi12276.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1H0_9FLOR1.070e-7898.36Histone H2A n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
Q7XY88_GRIJA9.540e-7394.96Histone H2A (Fragment) n=3 Tax=Rhodymeniophycidae ... [more]
R7QQ41_CHOCR2.730e-7191.60Histone H2A n=2 Tax=Chondrus crispus TaxID=2769 Re... [more]
A0A7J7IHZ2_9RHOD3.550e-6785.47Histone H2A n=1 Tax=Cyanidiococcus yangmingshanens... [more]
A0A5J4Z1G0_PORPP1.940e-6685.04Histone H2A n=2 Tax=Porphyridiaceae TaxID=2799 Rep... [more]
M1V984_CYAM17.550e-6686.32Histone H2A n=2 Tax=Cyanidioschyzon merolae (strai... [more]
A0A7S0G427_9RHOD4.870e-6586.44Histone H2A n=1 Tax=Rhodosorus marinus TaxID=10192... [more]
A0A0G2DVQ8_9EURO1.520e-6282.35Histone H2A n=5 Tax=saccharomyceta TaxID=716545 Re... [more]
A0A075B1L3_ROZAC1.680e-6280.87Histone H2A n=3 Tax=Rozella allomycis (strain CSF5... [more]
A0A0D1X3S4_EXOME4.360e-6281.51Histone H2A n=27 Tax=Eukaryota TaxID=2759 RepID=A0... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 64..78
score: 81.4
coord: 35..50
score: 81.73
coord: 6..28
score: 71.76
coord: 50..63
score: 90.54
coord: 92..110
score: 69.82
IPR002119Histone H2ASMARTSM00414h2a4coord: 3..115
e-value: 2.1E-76
score: 269.8
IPR002119Histone H2APANTHERPTHR23430HISTONE H2Acoord: 6..113
IPR002119Histone H2ACDDcd00074H2Acoord: 3..112
e-value: 5.08882E-71
score: 206.032
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 1..122
e-value: 6.8E-64
score: 215.5
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 8..112
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 4..81
e-value: 1.2E-16
score: 61.2
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 84..116
e-value: 2.8E-19
score: 68.6
NoneNo IPR availablePANTHERPTHR23430:SF310HISTONE H2Acoord: 6..113
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 14..20

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4080629..4080997 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12276.t1Gvermi12276.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4080629..4080997 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12276.t1 ID=Gvermi12276.t1|Name=Gvermi12276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=123bp
MAPKKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEY
LTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGV
LPNIHQVLMPRKKAKGDASQEV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR032454Histone_H2A_C
IPR032458Histone_H2A_CS