Gvermi12276.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12276.t1
Unique NameGvermi12276.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4080629..4080997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN170CT
PFAMsHistone,Histone_H2A_C
Max annot lvl2759|Eukaryota
KEGG koko:K11251,ko:K15001
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Evalue5.35e-66
EggNOG OGsCOG5262@1|root,KOG1756@2759|Eukaryota
DescriptionHistone H2A
COG categoryB
BRITEko00000,ko00001,ko00199,ko01000,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12276Gvermi12276Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4080629..4080997 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12276.t1.start1Gvermi12276.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4080629..4080631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12276.t1.CDS1Gvermi12276.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4080629..4080997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12276.t1.exon1Gvermi12276.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4080629..4080997 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12276.t1.stop1Gvermi12276.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4080995..4080997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12276.t1Gvermi12276.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4080629..4080997 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12276.t1 ID=Gvermi12276.t1|Name=Gvermi12276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=123bp
MAPKKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEY
LTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGV
LPNIHQVLMPRKKAKGDASQEV*
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spliced messenger RNA

>Gvermi12276.t1 ID=Gvermi12276.t1|Name=Gvermi12276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=369bp|location=Sequence derived from alignment at ScGOVlb_3404:4080629..4080997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAAGAAGGCTGCCCAATCTCGTTCCAGCAAGGCTGGCCTCCA
GTTCCCCGTTGGTCGTATCCACCGCTTTCTTCGCAAAGGAGGTTACGCTG
ATCGTGTTGGTGCTGGTGCTCCAGTTTATATGGCTGCTGTGATGGAATAT
CTGACGGCTGAAGTCCTTGAGCTTGCCGGCAATGCCGCCCGTGACAACAA
GAAAACGCGAATCATTCCCCGACACATTCAACTTGCGGTTCGCAATGATG
AGGAATTAAACAAGCTTCTTGGAAATGTTACCATCGCTAGTGGCGGTGTA
CTTCCGAACATTCATCAGGTCCTCATGCCACGCAAGAAGGCTAAAGGTGA
TGCTTCGCAAGAGGTTTAA
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protein sequence of Gvermi12276.t1

>Gvermi12276.t1 ID=Gvermi12276.t1|Name=Gvermi12276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=123bp
MAPKKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEY
LTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGV
LPNIHQVLMPRKKAKGDASQEV*
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mRNA from alignment at ScGOVlb_3404:4080629..4080997+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12276.t1 ID=Gvermi12276.t1|Name=Gvermi12276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=369bp|location=Sequence derived from alignment at ScGOVlb_3404:4080629..4080997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCAAGAAGGCTGCCCAATCTCGTTCCAGCAAGGCTGGCCTCCA
GTTCCCCGTTGGTCGTATCCACCGCTTTCTTCGCAAAGGAGGTTACGCTG
ATCGTGTTGGTGCTGGTGCTCCAGTTTATATGGCTGCTGTGATGGAATAT
CTGACGGCTGAAGTCCTTGAGCTTGCCGGCAATGCCGCCCGTGACAACAA
GAAAACGCGAATCATTCCCCGACACATTCAACTTGCGGTTCGCAATGATG
AGGAATTAAACAAGCTTCTTGGAAATGTTACCATCGCTAGTGGCGGTGTA
CTTCCGAACATTCATCAGGTCCTCATGCCACGCAAGAAGGCTAAAGGTGA
TGCTTCGCAAGAGGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4080629..4080997+

>Gvermi12276.t1 ID=Gvermi12276.t1|Name=Gvermi12276.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=369bp|location=Sequence derived from alignment at ScGOVlb_3404:4080629..4080997+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCAAGAAGGCTGCCCAATCTCGTTCCAGCAAGGCTGGCCTCCA
GTTCCCCGTTGGTCGTATCCACCGCTTTCTTCGCAAAGGAGGTTACGCTG
ATCGTGTTGGTGCTGGTGCTCCAGTTTATATGGCTGCTGTGATGGAATAT
CTGACGGCTGAAGTCCTTGAGCTTGCCGGCAATGCCGCCCGTGACAACAA
GAAAACGCGAATCATTCCCCGACACATTCAACTTGCGGTTCGCAATGATG
AGGAATTAAACAAGCTTCTTGGAAATGTTACCATCGCTAGTGGCGGTGTA
CTTCCGAACATTCATCAGGTCCTCATGCCACGCAAGAAGGCTAAAGGTGA
TGCTTCGCAAGAGGTTTAA
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