Gvermi12249.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male
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Overview
Homology
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A2V3J036_9FLOR (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J036_9FLOR) HSP 1 Score: 258 bits (658), Expect = 2.870e-86 Identity = 123/152 (80.92%), Postives = 138/152 (90.79%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKYTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRKK 152
MAGIIFSDSF I RLDWDEKTKSV KKFDKVSRIEGKSEAY+TE+ LDVNTE+YP+ E I++LITERLE+ PPNPD+ +GYNPIKPLGDRA+ Y+YIM GKIFKY E+ QRA+IYFSFGGLLMKLHGESNILLSHIF+VDADVYLF+RKK
Sbjct: 1 MAGIIFSDSFKIRRLDWDEKTKSVIKKFDKVSRIEGKSEAYDTELVLDVNTEIYPVSADEVIDILITERLEDTPPNPDDPEGYNPIKPLGDRADAYEYIMHGKIFKYHEERQRANIYFSFGGLLMKLHGESNILLSHIFRVDADVYLFVRKK 152
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A1B0CWD7_LUTLO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=10 Tax=Diptera TaxID=7147 RepID=A0A1B0CWD7_LUTLO) HSP 1 Score: 114 bits (285), Expect = 1.340e-29 Identity = 62/158 (39.24%), Postives = 100/158 (63.29%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFK------YTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D FN+ +D + KKFD+VSR+ +SE+++ ++ LD+N +YPM +G+ +++ L E+G P E YNP++ G RA+ ++Y+M GKI++ +TE R Y SFGGLLM+L G++N L H F+VD ++YL ++K
Sbjct: 1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATTLYEDGHPGSGE---YNPLETEGTRADSFEYVMYGKIYRIEGDEAHTEASSRLSAYVSFGGLLMRLQGDANNL--HGFEVDQNIYLLMKK 147
BLAST of Gvermi12249.t1 vs. uniprot
Match: UPI001CFABD58 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58) HSP 1 Score: 114 bits (285), Expect = 1.340e-29 Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F++ +D + KKFD+VSR+ +SE+++ E+ LDVNT+VYP+ +G+ ++I L E+G P+ + YNP+ RA+ ++Y+M GK+++ TE R Y S+GGLLM+L G++N L H F+VD VYL ++K
Sbjct: 1 MAGILFEDIFDVKDID------PLGKKFDRVSRLHCESESFKMELILDVNTQVYPVDLGDKFRLVIASTLYEDGTPDDGD---YNPVDDKPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDTRVYLLMKK 147
BLAST of Gvermi12249.t1 vs. uniprot
Match: UPI001E1D4FCA (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA) HSP 1 Score: 112 bits (280), Expect = 7.430e-29 Identity = 64/157 (40.76%), Postives = 97/157 (61.78%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIF-----KYTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F++ +D D KKFD+VSR+ +SE+++ ++ LDVNT++YPM + + M+I L E+G P E YNP RA+ ++Y+M GK++ KY D R Y S+GGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLFCESESFKMDLILDVNTQLYPMDLADKFRMVIATTLNEDGTPADSE---YNPTDTGPSRADSFEYVMYGKVYRLEGDKYPPDSSRLAAYVSYGGLLMRLQGDANNL--HGFEVDSHVYLLMKK 146
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A3P8RBI7_ASTCA (RNA polymerase II subunit H n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=A0A3P8RBI7_ASTCA) HSP 1 Score: 113 bits (282), Expect = 8.480e-29 Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F++ +D D KKFD+VSR+ +SE+++ ++ LDVN ++YP+ +G+ ++I L E+G P+ E YNP RA+ +DY+M GK++K TE R Y S+GGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 30 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGE---YNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 176
BLAST of Gvermi12249.t1 vs. uniprot
Match: Q568H8_DANRE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=128 Tax=Gnathostomata TaxID=7776 RepID=Q568H8_DANRE) HSP 1 Score: 112 bits (279), Expect = 1.080e-28 Identity = 63/158 (39.87%), Postives = 98/158 (62.03%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F++ +D D KKFD+VSR+ +SE+++ ++ LDVN ++YP+ +G+ ++I L E+G P+ E YNP RA+ +DY+M GK+++ TE R Y S+GGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGE---YNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 147
BLAST of Gvermi12249.t1 vs. uniprot
Match: E3TEV3_ICTPU (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Clupeocephala TaxID=186625 RepID=E3TEV3_ICTPU) HSP 1 Score: 111 bits (277), Expect = 2.170e-28 Identity = 63/157 (40.13%), Postives = 95/157 (60.51%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F++ +D D KKFD+VSR+ +SE+++ ++ LDVNT++YP+ +G+ ++I L E + D YNP RA+ +DY M GK++K TE R Y S+GGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNTQIYPVELGDKFRLVIASTLYEDGTSDDGE--YNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 147
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A6P5A3K3_BRABE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A3K3_BRABE) HSP 1 Score: 110 bits (275), Expect = 4.340e-28 Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFK------YTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F++ +D D KKFD+VSR+ +SE+++ E+ LDVNT+VYP+ +G+ +++ L E+G P+ E + P RA+ ++Y+M GKI++ +TE R Y S+GGLLM+L G++N L H +VD VYL I+K
Sbjct: 1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMELILDVNTQVYPVDIGDKFRLVLASTLREDGAPDDGE---FIPTDGTPSRADQFEYVMYGKIYRIEGDDTHTESATRLSAYVSYGGLLMRLQGDANNL--HGMEVDKHVYLLIKK 147
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A3M7PH88_BRAPC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Brachionus TaxID=10194 RepID=A0A3M7PH88_BRAPC) HSP 1 Score: 110 bits (274), Expect = 5.980e-28 Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
M I+F D F++ +D D +KFD+VSR+ +SE+++ ++ LDVNT++YPM +G+ +LI +L + + +E YNP+ RA+ ++Y+M G++++ TE Y SFGGLLM+LHG++N L F+ DA+VYL ++K
Sbjct: 1 MGDILFEDIFDVKDIDPD------GQKFDRVSRLFCESESFKMDLILDVNTQIYPMALGDKFRLLICTKLRDDQADDNE---YNPLDTSPSRADQFEYVMHGRVYRIEGDETATESASNLKAYVSFGGLLMRLHGDANNLFG--FKQDANVYLLMKK 146
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A6P7TDY6_OCTVU (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7TDY6_OCTVU) HSP 1 Score: 110 bits (274), Expect = 5.980e-28 Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = 0
Query: 1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKYTEDMQRAD-----IYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F++ LD D KKFD+VSR+ +SE+++ + LDVNT+ YP+ +G+ M+I L E+G P+ E Y+P+ RA+ ++Y+M GK++K D AD Y SFGGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 1 MAGVLFEDIFDVKDLDPD------GKKFDRVSRLFCESESFKMYLILDVNTQTYPVELGDKFRMVIATTLREDGYPDDGE---YSPVDSGPTRADSFEYVMYGKVYKLEGDETGADSGRLSAYVSFGGLLMRLQGDANNL--HGFEVDSHVYLLMKK 146 The following BLAST results are available for this feature:
BLAST of Gvermi12249.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gvermi12249.t1 ID=Gvermi12249.t1|Name=Gvermi12249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bpback to top |