Gvermi12249.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12249.t1
Unique NameGvermi12249.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length153
Homology
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A2V3J036_9FLOR (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J036_9FLOR)

HSP 1 Score: 258 bits (658), Expect = 2.870e-86
Identity = 123/152 (80.92%), Postives = 138/152 (90.79%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKYTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRKK 152
            MAGIIFSDSF I RLDWDEKTKSV KKFDKVSRIEGKSEAY+TE+ LDVNTE+YP+   E I++LITERLE+ PPNPD+ +GYNPIKPLGDRA+ Y+YIM GKIFKY E+ QRA+IYFSFGGLLMKLHGESNILLSHIF+VDADVYLF+RKK
Sbjct:    1 MAGIIFSDSFKIRRLDWDEKTKSVIKKFDKVSRIEGKSEAYDTELVLDVNTEIYPVSADEVIDILITERLEDTPPNPDDPEGYNPIKPLGDRADAYEYIMHGKIFKYHEERQRANIYFSFGGLLMKLHGESNILLSHIFRVDADVYLFVRKK 152          
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A1B0CWD7_LUTLO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=10 Tax=Diptera TaxID=7147 RepID=A0A1B0CWD7_LUTLO)

HSP 1 Score: 114 bits (285), Expect = 1.340e-29
Identity = 62/158 (39.24%), Postives = 100/158 (63.29%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFK------YTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D FN+  +D +       KKFD+VSR+  +SE+++ ++ LD+N  +YPM +G+   +++   L E+G P   E   YNP++  G RA+ ++Y+M GKI++      +TE   R   Y SFGGLLM+L G++N L  H F+VD ++YL ++K
Sbjct:    1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATTLYEDGHPGSGE---YNPLETEGTRADSFEYVMYGKIYRIEGDEAHTEASSRLSAYVSFGGLLMRLQGDANNL--HGFEVDQNIYLLMKK 147          
BLAST of Gvermi12249.t1 vs. uniprot
Match: UPI001CFABD58 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58)

HSP 1 Score: 114 bits (285), Expect = 1.340e-29
Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F++  +D       + KKFD+VSR+  +SE+++ E+ LDVNT+VYP+ +G+   ++I   L E+G P+  +   YNP+     RA+ ++Y+M GK+++       TE   R   Y S+GGLLM+L G++N L  H F+VD  VYL ++K
Sbjct:    1 MAGILFEDIFDVKDID------PLGKKFDRVSRLHCESESFKMELILDVNTQVYPVDLGDKFRLVIASTLYEDGTPDDGD---YNPVDDKPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDTRVYLLMKK 147          
BLAST of Gvermi12249.t1 vs. uniprot
Match: UPI001E1D4FCA (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA)

HSP 1 Score: 112 bits (280), Expect = 7.430e-29
Identity = 64/157 (40.76%), Postives = 97/157 (61.78%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIF-----KYTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F++  +D D       KKFD+VSR+  +SE+++ ++ LDVNT++YPM + +   M+I   L E+G P   E   YNP      RA+ ++Y+M GK++     KY  D  R   Y S+GGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:    1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLFCESESFKMDLILDVNTQLYPMDLADKFRMVIATTLNEDGTPADSE---YNPTDTGPSRADSFEYVMYGKVYRLEGDKYPPDSSRLAAYVSYGGLLMRLQGDANNL--HGFEVDSHVYLLMKK 146          
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A3P8RBI7_ASTCA (RNA polymerase II subunit H n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=A0A3P8RBI7_ASTCA)

HSP 1 Score: 113 bits (282), Expect = 8.480e-29
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F++  +D D       KKFD+VSR+  +SE+++ ++ LDVN ++YP+ +G+   ++I   L E+G P+  E   YNP      RA+ +DY+M GK++K       TE   R   Y S+GGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:   30 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGE---YNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 176          
BLAST of Gvermi12249.t1 vs. uniprot
Match: Q568H8_DANRE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=128 Tax=Gnathostomata TaxID=7776 RepID=Q568H8_DANRE)

HSP 1 Score: 112 bits (279), Expect = 1.080e-28
Identity = 63/158 (39.87%), Postives = 98/158 (62.03%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F++  +D D       KKFD+VSR+  +SE+++ ++ LDVN ++YP+ +G+   ++I   L E+G P+  E   YNP      RA+ +DY+M GK+++       TE   R   Y S+GGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:    1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGE---YNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 147          
BLAST of Gvermi12249.t1 vs. uniprot
Match: E3TEV3_ICTPU (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Clupeocephala TaxID=186625 RepID=E3TEV3_ICTPU)

HSP 1 Score: 111 bits (277), Expect = 2.170e-28
Identity = 63/157 (40.13%), Postives = 95/157 (60.51%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F++  +D D       KKFD+VSR+  +SE+++ ++ LDVNT++YP+ +G+   ++I   L E   + D    YNP      RA+ +DY M GK++K       TE   R   Y S+GGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:    1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNTQIYPVELGDKFRLVIASTLYEDGTSDDGE--YNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 147          
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A6P5A3K3_BRABE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A3K3_BRABE)

HSP 1 Score: 110 bits (275), Expect = 4.340e-28
Identity = 62/158 (39.24%), Postives = 97/158 (61.39%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFK------YTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F++  +D D       KKFD+VSR+  +SE+++ E+ LDVNT+VYP+ +G+   +++   L E+G P+  E   + P      RA+ ++Y+M GKI++      +TE   R   Y S+GGLLM+L G++N L  H  +VD  VYL I+K
Sbjct:    1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMELILDVNTQVYPVDIGDKFRLVLASTLREDGAPDDGE---FIPTDGTPSRADQFEYVMYGKIYRIEGDDTHTESATRLSAYVSYGGLLMRLQGDANNL--HGMEVDKHVYLLIKK 147          
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A3M7PH88_BRAPC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Brachionus TaxID=10194 RepID=A0A3M7PH88_BRAPC)

HSP 1 Score: 110 bits (274), Expect = 5.980e-28
Identity = 58/157 (36.94%), Postives = 96/157 (61.15%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKY------TEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            M  I+F D F++  +D D       +KFD+VSR+  +SE+++ ++ LDVNT++YPM +G+   +LI  +L +   + +E   YNP+     RA+ ++Y+M G++++       TE       Y SFGGLLM+LHG++N L    F+ DA+VYL ++K
Sbjct:    1 MGDILFEDIFDVKDIDPD------GQKFDRVSRLFCESESFKMDLILDVNTQIYPMALGDKFRLLICTKLRDDQADDNE---YNPLDTSPSRADQFEYVMHGRVYRIEGDETATESASNLKAYVSFGGLLMRLHGDANNLFG--FKQDANVYLLMKK 146          
BLAST of Gvermi12249.t1 vs. uniprot
Match: A0A6P7TDY6_OCTVU (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7TDY6_OCTVU)

HSP 1 Score: 110 bits (274), Expect = 5.980e-28
Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = 0
Query:    1 MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVNTEVYPMGVGETIEMLITERL-EEGPPNPDETKGYNPIKPLGDRANMYDYIMRGKIFKYTEDMQRAD-----IYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F++  LD D       KKFD+VSR+  +SE+++  + LDVNT+ YP+ +G+   M+I   L E+G P+  E   Y+P+     RA+ ++Y+M GK++K   D   AD      Y SFGGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:    1 MAGVLFEDIFDVKDLDPD------GKKFDRVSRLFCESESFKMYLILDVNTQTYPVELGDKFRMVIATTLREDGYPDDGE---YSPVDSGPTRADSFEYVMYGKVYKLEGDETGADSGRLSAYVSFGGLLMRLQGDANNL--HGFEVDSHVYLLMKK 146          
The following BLAST results are available for this feature:
BLAST of Gvermi12249.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J036_9FLOR2.870e-8680.92DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1B0CWD7_LUTLO1.340e-2939.24DNA-directed RNA polymerases I, II, and III subuni... [more]
UPI001CFABD581.340e-2939.87DNA-directed RNA polymerases I, II, and III subuni... [more]
UPI001E1D4FCA7.430e-2940.76LOW QUALITY PROTEIN: DNA-directed RNA polymerases ... [more]
A0A3P8RBI7_ASTCA8.480e-2940.51RNA polymerase II subunit H n=1 Tax=Astatotilapia ... [more]
Q568H8_DANRE1.080e-2839.87DNA-directed RNA polymerases I, II, and III subuni... [more]
E3TEV3_ICTPU2.170e-2840.13DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A6P5A3K3_BRABE4.340e-2839.24DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A3M7PH88_BRAPC5.980e-2836.94DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A6P7TDY6_OCTVU5.980e-2841.40DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..151
e-value: 1.4E-35
score: 134.2
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 23..151
e-value: 1.6E-33
score: 115.8
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..152
e-value: 2.7E-35
score: 119.4
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..151
NoneNo IPR availableGENE3D2.40.50.140coord: 6..152
e-value: 2.7E-38
score: 133.2
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..151
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3972908..3973595 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12249.t1Gvermi12249.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3972908..3973595 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12249.t1 ID=Gvermi12249.t1|Name=Gvermi12249.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=153bp
MAGIIFSDSFNIWRLDWDEKTKSVAKKFDKVSRIEGKSEAYETEVTLDVN
TEVYPMGVGETIEMLITERLEEGPPNPDETKGYNPIKPLGDRANMYDYIM
RGKIFKYTEDMQRADIYFSFGGLLMKLHGESNILLSHIFQVDADVYLFIR
KK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold