Gvermi12212.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12212.t1
Unique NameGvermi12212.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length778
Homology
BLAST of Gvermi12212.t1 vs. uniprot
Match: A0A2V3IMR3_9FLOR (BTB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMR3_9FLOR)

HSP 1 Score: 435 bits (1119), Expect = 3.790e-138
Identity = 283/759 (37.29%), Postives = 399/759 (52.57%), Query Frame = 0
Query:    1 MVKDRPIPLHTWELDGSTLSPTACHLEEFNNRQCPEPDPLVTLRFE---HLGKEAHIARELHVRASVLKFSSPPFQALVSSGFLESKTRLVHLEYASYTSFQYIVPFLNCEKIDLTTMPIYLPIHADRWGLDVLFDACFAFAETQSWPTFHSFMCFALPLMRLLQVPRTFKHVFAARISFRLDYVMDWIRGEEDCRTQRLPSTPATILDTKSNRS---ASAVRCPVHVDGAPCPCPAGVMLRRTFFRSEHYEIESQRYSATIEHFDTLNTSTAEIKQNPLGSAANVPSNQSMPKTNVVRLSQIRAPAETFSDKNCIDHNPLGNNVKLIKEKKVASKKMTKAYGNTGACTLVPVSERKAVDTRANLVYSSSSPLDLYTPSFNTLQTRKGASWSRPCDMDNNKPTSLSPVTSDDGRRPLPLPKCLATGSSEKHNCNLRKRSEHPESADREYAFWDAMKVQKMLPRLLKKLVWFSSPGYAVFILKGVLYVLASELTEEEKIDLLRLLPWEREDFFEALHSNSPFSWRSSDWRIVAKAQSLAVYRKAGGGREYCLNIAWPGFVHEVCEQSSLSDKKHSHHAYINAENMSMLISLRTRDQDGGKFQPLLLKISNHEPKEAEVLEEDLLERPLNVSVSVREMDCGCEAGSGMKMSIVPRMFYGLLLSDLKVRSLFAETGVTFTIMDDFEMSRWVRRHHPTCGLIVALRVRICDENQRDHARDSTDYSGERL--GRGECPCGLCFEDETSDDEMRDADMYSDASDE 751
            M K +PI L TW+LDGSTL+PTACHL+ + NR+ P PDPLVTLRF    H        +EL + ASVL+ SS P +ALVSSGFLES T +VHL++ S+  F+ IV FL CE ID+TT+P +L + ADRWGLDVLF+AC A+AE +SW +   FM F+LPLMR L VP TFK VFA+R++  L  V DWI G+E  R QR    P   L+ + +R+   +    C   V  +P     G     +   ++ Y IE   +  T+   D+   +          +  N P NQS   T        RAP  T S  +C              E  V +KK      +T + ++   S+             +S P +  +    T Q       +    +   +  SL   TS+  R   P        S E  +   +KR  + ESA++E A WDAMK Q ML + LK+L W++ PG   FIL GVL V+  +L+E E++ LLR+LPW+R DF + L+S+    W + +WRIVA+AQ+ +  R AGGG EY     W GF  EVC+ S     K      + A+ + + ++L  R++      PL L +S  +    +   EDL   PL VS+ +R MDC CEA S  K ++     YG    ++KV+ L       F I+ +  +++WV+ H P+CGL + + +RIC ++Q D   D  D    RL   RG CPCG C+E+  SDD  +  D+Y  ASD+
Sbjct:    1 MAKRKPIALRTWQLDGSTLTPTACHLQCYENRRRPNPDPLVTLRFAAPAHASSARESPQELFIHASVLRDSSSPLRALVSSGFLESTTHVVHLDHQSFQPFKVIVSFLQCEDIDMTTVPDHLAVFADRWGLDVLFEACLAYAEIRSWSSVDEFMLFSLPLMRFLHVPYTFKCVFASRLALCLSDVQDWISGDEGIRNQRRRLAPT--LNNRHSRAQYTSHETICNTIVGTSPNDILCGRPAVLSHGSAKFYCIE---HLVTVVSEDSPKPAERPPSSPSSSAQVNPPDNQSPVPTQAENTD--RAPHATKSFASC--------------EPAVVAKK-----ASTSSVSVARSSQAXXXXXXXXXXXXTSKPSESKSEKRPTEQPVTEVQDA----IQKQRLKSLPAFTSNTDRSTRPQQLDSEARSFEMVSIAGKKRGRNSESAEKEQALWDAMKSQHMLYKALKELAWYAMPGCVPFILDGVLRVMEDKLSESEQVALLRILPWDRRDFEQVLNSDFTSKWSTREWRIVARAQAQSA-RIAGGGDEYSAVFYWWGFADEVCQSSGAPFGKLRRETTMLADGLYIHLALHAREKRKLGHHPLFLTMSVLD----DTSSEDLRNMPLLVSIHLRAMDCSCEAASCSKSALDYNQSYGFRHKNVKVKFLLGTP--VFEILSEHGVAQWVKLHQPSCGLALRVVLRIC-KDQVDPEADMNDAHDVRLRRARGICPCGSCYEEGLSDDSGQGEDIYIIASDD 721          
BLAST of Gvermi12212.t1 vs. uniprot
Match: A0A2V3II75_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II75_9FLOR)

HSP 1 Score: 88.2 bits (217), Expect = 1.920e-14
Identity = 57/179 (31.84%), Postives = 92/179 (51.40%), Query Frame = 0
Query:    8 PLHTWELDGSTLSPTACHLEEFNNRQCPEP--DPLVTL----RFEHLGKEAHIARELHVRASVLKFSSPPFQALVSSGFLESKTRLVHLEYASYTSFQYIVPFLNCEKIDLTTMPIYLPIHADRWGLDVLFDACFAFAETQSWPTFHSFMCFALPLMRLLQVPRTFKHVFAARISFRLD 180
            PL  WEL G++LSPT CHL+    R   +   DPL+T+     +            L +  S+L+ +SP   AL+ +   ++++ +  L++    +F  +  FL  + +DL   P  LP+ A RWGL+ LF+ACFA+AE        + +   +P++  ++VP TFK  FA      LD
Sbjct:   13 PLGPWELRGASLSPTRCHLQAHARRLQSQSSTDPLITIIVQPPYTPXXXXXXXXXALTIHRSLLRAASPVLSALIPA---DARSPVRVLDWPD--TFSLLRKFLYLQPLDLAVAPPDLPLAAARWGLNQLFEACFAYAERNLPTDMRALLWRWMPVLNAVRVPPTFKTTFALSFVAALD 186          
The following BLAST results are available for this feature:
BLAST of Gvermi12212.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMR3_9FLOR3.790e-13837.29BTB domain-containing protein n=1 Tax=Gracilariops... [more]
A0A2V3II75_9FLOR1.920e-1431.84Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011333SKP1/BTB/POZ domain superfamilyGENE3D3.30.710.10Potassium Channel Kv1.1; Chain Acoord: 40..142
e-value: 2.1E-6
score: 29.7
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 57..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 390..404
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..406
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 748..777
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 735..777
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 484..777
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..461
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 462..483
IPR000210BTB/POZ domainPROSITEPS50097BTBcoord: 39..114
score: 9.516766

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3861269..3863602 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12212.t1Gvermi12212.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3861269..3863602 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12212.t1 ID=Gvermi12212.t1|Name=Gvermi12212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=778bp
MVKDRPIPLHTWELDGSTLSPTACHLEEFNNRQCPEPDPLVTLRFEHLGK
EAHIARELHVRASVLKFSSPPFQALVSSGFLESKTRLVHLEYASYTSFQY
IVPFLNCEKIDLTTMPIYLPIHADRWGLDVLFDACFAFAETQSWPTFHSF
MCFALPLMRLLQVPRTFKHVFAARISFRLDYVMDWIRGEEDCRTQRLPST
PATILDTKSNRSASAVRCPVHVDGAPCPCPAGVMLRRTFFRSEHYEIESQ
RYSATIEHFDTLNTSTAEIKQNPLGSAANVPSNQSMPKTNVVRLSQIRAP
AETFSDKNCIDHNPLGNNVKLIKEKKVASKKMTKAYGNTGACTLVPVSER
KAVDTRANLVYSSSSPLDLYTPSFNTLQTRKGASWSRPCDMDNNKPTSLS
PVTSDDGRRPLPLPKCLATGSSEKHNCNLRKRSEHPESADREYAFWDAMK
VQKMLPRLLKKLVWFSSPGYAVFILKGVLYVLASELTEEEKIDLLRLLPW
EREDFFEALHSNSPFSWRSSDWRIVAKAQSLAVYRKAGGGREYCLNIAWP
GFVHEVCEQSSLSDKKHSHHAYINAENMSMLISLRTRDQDGGKFQPLLLK
ISNHEPKEAEVLEEDLLERPLNVSVSVREMDCGCEAGSGMKMSIVPRMFY
GLLLSDLKVRSLFAETGVTFTIMDDFEMSRWVRRHHPTCGLIVALRVRIC
DENQRDHARDSTDYSGERLGRGECPCGLCFEDETSDDEMRDADMYSDASD
ESESDSEVDGDEGDDDVNNNDIDDLEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011333SKP1/BTB/POZ_sf
IPR000210BTB/POZ_dom