Gvermi12212.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12212.t1
Unique Name	Gvermi12212.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	778

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3861269..3863602 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12212	Gvermi12212	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3861269..3863602 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12212.t1.start1	Gvermi12212.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3861269..3861271 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12212.t1.CDS1	Gvermi12212.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3861269..3863602 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12212.t1.exon1	Gvermi12212.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3861269..3863602 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12212.t1.stop1	Gvermi12212.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3863600..3863602 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12212.t1	Gvermi12212.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3861269..3863602 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3861269..3863602+
coding sequence from alignment at ScGOVlb_3404:3861269..3863602+

mRNA sequence

>Gvermi12212.t1 ID=Gvermi12212.t1|Name=Gvermi12212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=778bp
MVKDRPIPLHTWELDGSTLSPTACHLEEFNNRQCPEPDPLVTLRFEHLGK
EAHIARELHVRASVLKFSSPPFQALVSSGFLESKTRLVHLEYASYTSFQY
IVPFLNCEKIDLTTMPIYLPIHADRWGLDVLFDACFAFAETQSWPTFHSF
MCFALPLMRLLQVPRTFKHVFAARISFRLDYVMDWIRGEEDCRTQRLPST
PATILDTKSNRSASAVRCPVHVDGAPCPCPAGVMLRRTFFRSEHYEIESQ
RYSATIEHFDTLNTSTAEIKQNPLGSAANVPSNQSMPKTNVVRLSQIRAP
AETFSDKNCIDHNPLGNNVKLIKEKKVASKKMTKAYGNTGACTLVPVSER
KAVDTRANLVYSSSSPLDLYTPSFNTLQTRKGASWSRPCDMDNNKPTSLS
PVTSDDGRRPLPLPKCLATGSSEKHNCNLRKRSEHPESADREYAFWDAMK
VQKMLPRLLKKLVWFSSPGYAVFILKGVLYVLASELTEEEKIDLLRLLPW
EREDFFEALHSNSPFSWRSSDWRIVAKAQSLAVYRKAGGGREYCLNIAWP
GFVHEVCEQSSLSDKKHSHHAYINAENMSMLISLRTRDQDGGKFQPLLLK
ISNHEPKEAEVLEEDLLERPLNVSVSVREMDCGCEAGSGMKMSIVPRMFY
GLLLSDLKVRSLFAETGVTFTIMDDFEMSRWVRRHHPTCGLIVALRVRIC
DENQRDHARDSTDYSGERLGRGECPCGLCFEDETSDDEMRDADMYSDASD
ESESDSEVDGDEGDDDVNNNDIDDLEE*

spliced messenger RNA

>Gvermi12212.t1 ID=Gvermi12212.t1|Name=Gvermi12212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2334bp|location=Sequence derived from alignment at ScGOVlb_3404:3861269..3863602+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAAAGATAGACCTATTCCACTGCACACCTGGGAGCTGGACGGATC
CACGCTTTCTCCCACAGCTTGCCATCTGGAAGAGTTCAACAACAGGCAGT
GCCCCGAGCCAGACCCGCTCGTCACTCTACGTTTTGAACACCTCGGAAAA
GAGGCCCACATCGCCCGCGAGCTACATGTCCGTGCTTCTGTTCTCAAGTT
CTCGAGTCCCCCGTTTCAGGCATTAGTGTCTTCTGGATTTCTCGAGTCTA
AAACTCGATTAGTTCACCTCGAATATGCCTCTTACACATCTTTCCAGTAT
ATTGTGCCATTTTTAAACTGCGAGAAGATTGACTTGACCACCATGCCGAT
TTACCTTCCGATTCATGCAGATCGTTGGGGCTTAGATGTCCTGTTCGACG
CATGTTTTGCATTTGCAGAGACTCAGTCTTGGCCAACATTCCACAGCTTC
ATGTGCTTCGCTCTTCCTTTAATGCGCCTTCTCCAGGTTCCTCGAACTTT
CAAGCACGTATTTGCAGCCCGCATAAGCTTCCGCCTGGACTATGTAATGG
ACTGGATAAGAGGTGAAGAAGATTGTCGTACCCAGCGCCTTCCGTCAACA
CCAGCGACAATCCTGGACACGAAGTCCAATAGATCCGCATCTGCAGTTCG
CTGTCCAGTTCATGTGGATGGAGCTCCATGCCCTTGTCCTGCTGGAGTAA
TGCTGCGTCGTACATTCTTCCGCTCTGAACACTACGAAATAGAGAGCCAA
CGATATTCTGCGACTATTGAACATTTTGATACTTTAAACACATCAACTGC
CGAGATCAAGCAGAACCCGCTGGGCTCGGCAGCAAATGTTCCATCTAATC
AAAGTATGCCGAAAACAAATGTAGTTCGATTATCTCAGATACGCGCTCCC
GCGGAAACATTTTCTGATAAGAACTGTATTGATCACAACCCTCTCGGAAA
TAACGTCAAACTTATCAAAGAGAAGAAGGTCGCTTCTAAGAAAATGACAA
AAGCTTATGGTAATACGGGTGCTTGCACTCTCGTTCCTGTAAGCGAAAGA
AAAGCTGTTGATACGCGTGCGAATCTCGTATATTCATCCTCTTCTCCTCT
AGATCTCTACACGCCATCCTTCAACACACTACAGACCAGAAAAGGAGCGA
GCTGGTCCCGTCCTTGTGACATGGACAACAATAAACCCACATCTCTTTCG
CCGGTAACCTCTGACGACGGAAGGAGACCATTGCCTCTGCCAAAGTGTCT
CGCTACCGGAAGTTCAGAAAAACACAATTGTAATTTAAGGAAAAGAAGTG
AACATCCAGAATCAGCGGATAGAGAATATGCGTTCTGGGATGCAATGAAA
GTGCAGAAGATGTTGCCACGACTTCTGAAAAAATTGGTATGGTTCTCGTC
ACCAGGTTATGCCGTTTTCATTCTTAAAGGAGTATTGTATGTTCTTGCTA
GTGAATTGACGGAAGAGGAAAAAATCGATCTCCTTCGCTTACTACCATGG
GAGCGCGAAGACTTCTTTGAAGCCCTTCATTCGAACTCTCCCTTCAGCTG
GCGCTCGAGCGACTGGCGGATTGTTGCTAAGGCACAATCACTCGCTGTCT
ACAGGAAAGCCGGCGGTGGTAGGGAGTATTGTCTCAATATTGCGTGGCCT
GGTTTTGTTCACGAAGTCTGCGAACAATCAAGTCTATCAGATAAGAAGCA
CTCACACCATGCGTACATAAACGCTGAAAATATGTCGATGCTCATTTCCT
TGCGAACTAGAGACCAGGATGGAGGAAAATTTCAACCTCTACTTCTCAAA
ATTTCGAATCACGAGCCGAAAGAAGCAGAAGTCCTTGAAGAAGATCTTCT
CGAGCGTCCACTTAATGTTTCAGTTAGTGTGAGGGAGATGGACTGTGGCT
GCGAGGCTGGCTCAGGGATGAAGATGTCAATTGTTCCAAGAATGTTCTAT
GGTTTGTTGCTATCCGATCTTAAGGTTCGAAGTTTATTCGCAGAGACCGG
AGTTACATTTACAATCATGGATGACTTTGAAATGTCTCGTTGGGTCCGGC
GGCACCATCCTACTTGCGGCCTCATTGTAGCACTTCGAGTTCGGATTTGC
GATGAAAATCAAAGAGATCATGCTCGAGATTCTACAGATTACTCGGGAGA
GCGTCTTGGTCGCGGCGAGTGCCCTTGTGGATTGTGTTTTGAAGATGAAA
CTTCTGATGATGAAATGCGAGATGCAGATATGTACAGCGATGCGTCTGAT
GAAAGTGAAAGTGACAGTGAAGTGGATGGTGATGAAGGCGATGACGATGT
GAATAATAATGATATCGACGATCTTGAGGAGTAA

protein sequence of Gvermi12212.t1

>Gvermi12212.t1 ID=Gvermi12212.t1|Name=Gvermi12212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=778bp
MVKDRPIPLHTWELDGSTLSPTACHLEEFNNRQCPEPDPLVTLRFEHLGK
EAHIARELHVRASVLKFSSPPFQALVSSGFLESKTRLVHLEYASYTSFQY
IVPFLNCEKIDLTTMPIYLPIHADRWGLDVLFDACFAFAETQSWPTFHSF
MCFALPLMRLLQVPRTFKHVFAARISFRLDYVMDWIRGEEDCRTQRLPST
PATILDTKSNRSASAVRCPVHVDGAPCPCPAGVMLRRTFFRSEHYEIESQ
RYSATIEHFDTLNTSTAEIKQNPLGSAANVPSNQSMPKTNVVRLSQIRAP
AETFSDKNCIDHNPLGNNVKLIKEKKVASKKMTKAYGNTGACTLVPVSER
KAVDTRANLVYSSSSPLDLYTPSFNTLQTRKGASWSRPCDMDNNKPTSLS
PVTSDDGRRPLPLPKCLATGSSEKHNCNLRKRSEHPESADREYAFWDAMK
VQKMLPRLLKKLVWFSSPGYAVFILKGVLYVLASELTEEEKIDLLRLLPW
EREDFFEALHSNSPFSWRSSDWRIVAKAQSLAVYRKAGGGREYCLNIAWP
GFVHEVCEQSSLSDKKHSHHAYINAENMSMLISLRTRDQDGGKFQPLLLK
ISNHEPKEAEVLEEDLLERPLNVSVSVREMDCGCEAGSGMKMSIVPRMFY
GLLLSDLKVRSLFAETGVTFTIMDDFEMSRWVRRHHPTCGLIVALRVRIC
DENQRDHARDSTDYSGERLGRGECPCGLCFEDETSDDEMRDADMYSDASD
ESESDSEVDGDEGDDDVNNNDIDDLEE*

mRNA from alignment at ScGOVlb_3404:3861269..3863602+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12212.t1 ID=Gvermi12212.t1|Name=Gvermi12212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2334bp|location=Sequence derived from alignment at ScGOVlb_3404:3861269..3863602+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCAAAGATAGACCTATTCCACTGCACACCTGGGAGCTGGACGGATC
CACGCTTTCTCCCACAGCTTGCCATCTGGAAGAGTTCAACAACAGGCAGT
GCCCCGAGCCAGACCCGCTCGTCACTCTACGTTTTGAACACCTCGGAAAA
GAGGCCCACATCGCCCGCGAGCTACATGTCCGTGCTTCTGTTCTCAAGTT
CTCGAGTCCCCCGTTTCAGGCATTAGTGTCTTCTGGATTTCTCGAGTCTA
AAACTCGATTAGTTCACCTCGAATATGCCTCTTACACATCTTTCCAGTAT
ATTGTGCCATTTTTAAACTGCGAGAAGATTGACTTGACCACCATGCCGAT
TTACCTTCCGATTCATGCAGATCGTTGGGGCTTAGATGTCCTGTTCGACG
CATGTTTTGCATTTGCAGAGACTCAGTCTTGGCCAACATTCCACAGCTTC
ATGTGCTTCGCTCTTCCTTTAATGCGCCTTCTCCAGGTTCCTCGAACTTT
CAAGCACGTATTTGCAGCCCGCATAAGCTTCCGCCTGGACTATGTAATGG
ACTGGATAAGAGGTGAAGAAGATTGTCGTACCCAGCGCCTTCCGTCAACA
CCAGCGACAATCCTGGACACGAAGTCCAATAGATCCGCATCTGCAGTTCG
CTGTCCAGTTCATGTGGATGGAGCTCCATGCCCTTGTCCTGCTGGAGTAA
TGCTGCGTCGTACATTCTTCCGCTCTGAACACTACGAAATAGAGAGCCAA
CGATATTCTGCGACTATTGAACATTTTGATACTTTAAACACATCAACTGC
CGAGATCAAGCAGAACCCGCTGGGCTCGGCAGCAAATGTTCCATCTAATC
AAAGTATGCCGAAAACAAATGTAGTTCGATTATCTCAGATACGCGCTCCC
GCGGAAACATTTTCTGATAAGAACTGTATTGATCACAACCCTCTCGGAAA
TAACGTCAAACTTATCAAAGAGAAGAAGGTCGCTTCTAAGAAAATGACAA
AAGCTTATGGTAATACGGGTGCTTGCACTCTCGTTCCTGTAAGCGAAAGA
AAAGCTGTTGATACGCGTGCGAATCTCGTATATTCATCCTCTTCTCCTCT
AGATCTCTACACGCCATCCTTCAACACACTACAGACCAGAAAAGGAGCGA
GCTGGTCCCGTCCTTGTGACATGGACAACAATAAACCCACATCTCTTTCG
CCGGTAACCTCTGACGACGGAAGGAGACCATTGCCTCTGCCAAAGTGTCT
CGCTACCGGAAGTTCAGAAAAACACAATTGTAATTTAAGGAAAAGAAGTG
AACATCCAGAATCAGCGGATAGAGAATATGCGTTCTGGGATGCAATGAAA
GTGCAGAAGATGTTGCCACGACTTCTGAAAAAATTGGTATGGTTCTCGTC
ACCAGGTTATGCCGTTTTCATTCTTAAAGGAGTATTGTATGTTCTTGCTA
GTGAATTGACGGAAGAGGAAAAAATCGATCTCCTTCGCTTACTACCATGG
GAGCGCGAAGACTTCTTTGAAGCCCTTCATTCGAACTCTCCCTTCAGCTG
GCGCTCGAGCGACTGGCGGATTGTTGCTAAGGCACAATCACTCGCTGTCT
ACAGGAAAGCCGGCGGTGGTAGGGAGTATTGTCTCAATATTGCGTGGCCT
GGTTTTGTTCACGAAGTCTGCGAACAATCAAGTCTATCAGATAAGAAGCA
CTCACACCATGCGTACATAAACGCTGAAAATATGTCGATGCTCATTTCCT
TGCGAACTAGAGACCAGGATGGAGGAAAATTTCAACCTCTACTTCTCAAA
ATTTCGAATCACGAGCCGAAAGAAGCAGAAGTCCTTGAAGAAGATCTTCT
CGAGCGTCCACTTAATGTTTCAGTTAGTGTGAGGGAGATGGACTGTGGCT
GCGAGGCTGGCTCAGGGATGAAGATGTCAATTGTTCCAAGAATGTTCTAT
GGTTTGTTGCTATCCGATCTTAAGGTTCGAAGTTTATTCGCAGAGACCGG
AGTTACATTTACAATCATGGATGACTTTGAAATGTCTCGTTGGGTCCGGC
GGCACCATCCTACTTGCGGCCTCATTGTAGCACTTCGAGTTCGGATTTGC
GATGAAAATCAAAGAGATCATGCTCGAGATTCTACAGATTACTCGGGAGA
GCGTCTTGGTCGCGGCGAGTGCCCTTGTGGATTGTGTTTTGAAGATGAAA
CTTCTGATGATGAAATGCGAGATGCAGATATGTACAGCGATGCGTCTGAT
GAAAGTGAAAGTGACAGTGAAGTGGATGGTGATGAAGGCGATGACGATGT
GAATAATAATGATATCGACGATCTTGAGGAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3861269..3863602+

>Gvermi12212.t1 ID=Gvermi12212.t1|Name=Gvermi12212.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2334bp|location=Sequence derived from alignment at ScGOVlb_3404:3861269..3863602+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCAAAGATAGACCTATTCCACTGCACACCTGGGAGCTGGACGGATC
CACGCTTTCTCCCACAGCTTGCCATCTGGAAGAGTTCAACAACAGGCAGT
GCCCCGAGCCAGACCCGCTCGTCACTCTACGTTTTGAACACCTCGGAAAA
GAGGCCCACATCGCCCGCGAGCTACATGTCCGTGCTTCTGTTCTCAAGTT
CTCGAGTCCCCCGTTTCAGGCATTAGTGTCTTCTGGATTTCTCGAGTCTA
AAACTCGATTAGTTCACCTCGAATATGCCTCTTACACATCTTTCCAGTAT
ATTGTGCCATTTTTAAACTGCGAGAAGATTGACTTGACCACCATGCCGAT
TTACCTTCCGATTCATGCAGATCGTTGGGGCTTAGATGTCCTGTTCGACG
CATGTTTTGCATTTGCAGAGACTCAGTCTTGGCCAACATTCCACAGCTTC
ATGTGCTTCGCTCTTCCTTTAATGCGCCTTCTCCAGGTTCCTCGAACTTT
CAAGCACGTATTTGCAGCCCGCATAAGCTTCCGCCTGGACTATGTAATGG
ACTGGATAAGAGGTGAAGAAGATTGTCGTACCCAGCGCCTTCCGTCAACA
CCAGCGACAATCCTGGACACGAAGTCCAATAGATCCGCATCTGCAGTTCG
CTGTCCAGTTCATGTGGATGGAGCTCCATGCCCTTGTCCTGCTGGAGTAA
TGCTGCGTCGTACATTCTTCCGCTCTGAACACTACGAAATAGAGAGCCAA
CGATATTCTGCGACTATTGAACATTTTGATACTTTAAACACATCAACTGC
CGAGATCAAGCAGAACCCGCTGGGCTCGGCAGCAAATGTTCCATCTAATC
AAAGTATGCCGAAAACAAATGTAGTTCGATTATCTCAGATACGCGCTCCC
GCGGAAACATTTTCTGATAAGAACTGTATTGATCACAACCCTCTCGGAAA
TAACGTCAAACTTATCAAAGAGAAGAAGGTCGCTTCTAAGAAAATGACAA
AAGCTTATGGTAATACGGGTGCTTGCACTCTCGTTCCTGTAAGCGAAAGA
AAAGCTGTTGATACGCGTGCGAATCTCGTATATTCATCCTCTTCTCCTCT
AGATCTCTACACGCCATCCTTCAACACACTACAGACCAGAAAAGGAGCGA
GCTGGTCCCGTCCTTGTGACATGGACAACAATAAACCCACATCTCTTTCG
CCGGTAACCTCTGACGACGGAAGGAGACCATTGCCTCTGCCAAAGTGTCT
CGCTACCGGAAGTTCAGAAAAACACAATTGTAATTTAAGGAAAAGAAGTG
AACATCCAGAATCAGCGGATAGAGAATATGCGTTCTGGGATGCAATGAAA
GTGCAGAAGATGTTGCCACGACTTCTGAAAAAATTGGTATGGTTCTCGTC
ACCAGGTTATGCCGTTTTCATTCTTAAAGGAGTATTGTATGTTCTTGCTA
GTGAATTGACGGAAGAGGAAAAAATCGATCTCCTTCGCTTACTACCATGG
GAGCGCGAAGACTTCTTTGAAGCCCTTCATTCGAACTCTCCCTTCAGCTG
GCGCTCGAGCGACTGGCGGATTGTTGCTAAGGCACAATCACTCGCTGTCT
ACAGGAAAGCCGGCGGTGGTAGGGAGTATTGTCTCAATATTGCGTGGCCT
GGTTTTGTTCACGAAGTCTGCGAACAATCAAGTCTATCAGATAAGAAGCA
CTCACACCATGCGTACATAAACGCTGAAAATATGTCGATGCTCATTTCCT
TGCGAACTAGAGACCAGGATGGAGGAAAATTTCAACCTCTACTTCTCAAA
ATTTCGAATCACGAGCCGAAAGAAGCAGAAGTCCTTGAAGAAGATCTTCT
CGAGCGTCCACTTAATGTTTCAGTTAGTGTGAGGGAGATGGACTGTGGCT
GCGAGGCTGGCTCAGGGATGAAGATGTCAATTGTTCCAAGAATGTTCTAT
GGTTTGTTGCTATCCGATCTTAAGGTTCGAAGTTTATTCGCAGAGACCGG
AGTTACATTTACAATCATGGATGACTTTGAAATGTCTCGTTGGGTCCGGC
GGCACCATCCTACTTGCGGCCTCATTGTAGCACTTCGAGTTCGGATTTGC
GATGAAAATCAAAGAGATCATGCTCGAGATTCTACAGATTACTCGGGAGA
GCGTCTTGGTCGCGGCGAGTGCCCTTGTGGATTGTGTTTTGAAGATGAAA
CTTCTGATGATGAAATGCGAGATGCAGATATGTACAGCGATGCGTCTGAT
GAAAGTGAAAGTGACAGTGAAGTGGATGGTGATGAAGGCGATGACGATGT
GAATAATAATGATATCGACGATCTTGAGGAGTAA