Gvermi11532.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi11532.t1
Unique NameGvermi11532.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length166
Homology
BLAST of Gvermi11532.t1 vs. uniprot
Match: A0A2V3ISP7_9FLOR (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISP7_9FLOR)

HSP 1 Score: 190 bits (483), Expect = 1.450e-58
Identity = 88/140 (62.86%), Postives = 113/140 (80.71%), Query Frame = 0
Query:    1 MGGLDVAVGFQGPLGAIVEQGSRSLLEGVEGVKSVAVMVKGEGRFFLGKFREQNPVAILRQEGIISKALKTGNRAYLADMKVVPVRETEFGFFPKECQSVLVQPVSEDICVIVGADRPRPFTGQDFGWVQAVSDRIGASL 140
            MGG+ V  GF+G    + E+ ++++++G+EG KSVAVMV+GEGRFFLG+F  + P   + +EGI++KA+ +G RAYLADMKVVPVRETEFGF P++CQ VLVQP SED+CVIVGADRPR  TGQDFGWVQA+ DR+G  L
Sbjct:   68 MGGIQVKSGFEGSNAEVAERCAQAVIDGIEGAKSVAVMVRGEGRFFLGQFSTEAPATHMVEEGIVAKAMGSGKRAYLADMKVVPVRETEFGFLPQKCQCVLVQPASEDVCVIVGADRPRALTGQDFGWVQAICDRMGGYL 207          
BLAST of Gvermi11532.t1 vs. uniprot
Match: A0A7S1TBU2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBU2_9RHOD)

HSP 1 Score: 86.3 bits (212), Expect = 3.840e-18
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 0
Query:   25 LLEGVEGVKSVAVMVKGEGRFFL-GKFREQNPVAILR----QEGIISKALKTGNRAYLADMKVVPVRETEFGFFPKECQSVLVQPVSEDICVIVGADRPRPFTGQDFGWVQAVSDRIGASL 140
            +L G+  V+SV V   GEG     GK  E +  A +R    Q  ++  AL+TG RAYLAD+ + P R  EF F P   Q+V+V PV     VI+G +R R F G DFGW+QA+ D+I +SL
Sbjct:   59 MLLGIAQVRSVVVWRDGEGVLVRKGKGSEASSEAWMRGDREQGTVVDIALRTGRRAYLADLAMAPAR-VEFEFLPARTQAVVVWPVDPRTAVILGTNRARCFQGVDFGWLQAIIDQIQSSL 178          
BLAST of Gvermi11532.t1 vs. uniprot
Match: A0A7S2ZMS3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZMS3_9RHOD)

HSP 1 Score: 79.0 bits (193), Expect = 7.280e-15
Identity = 43/115 (37.39%), Postives = 69/115 (60.00%), Query Frame = 0
Query:   22 SRSLLEGVEGVKSVAVMVKGEGRFFLGKFREQNPVAILRQEGIISKALKTGNRAYLADMKVVPVRETEFGFFPKECQSVLVQPVSEDICVIVGADRPRPFTGQDFGWVQAVSDRI 136
            SRS++  +  V+SV +   G+     G   E +PV +     I+ KAL +  + Y A ++++P R  EF + PKE Q+VL+QP+S    +I+GAD+ RP    DFGW+QA++ R+
Sbjct:  121 SRSIIASIPNVRSVLIYEGGKTVLREGIMGE-SPVVV--PGPILEKALTSEEKTYFARLEILPGR-FEFTYLPKETQAVLIQPLSPTSALILGADKVRPIASVDFGWIQAITQRV 231          
BLAST of Gvermi11532.t1 vs. uniprot
Match: A0A7S0G2H2_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2H2_9RHOD)

HSP 1 Score: 78.2 bits (191), Expect = 1.460e-14
Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   22 SRSLLEGVEGVKSVAVMVKGEGRFFLGKFREQNPVAILRQEGIISKALKTGNRAYLADMKVVPVRETEFGFFPKECQSVLVQPVSEDICVIVGADRPRPFTGQDFGWVQAVSDRI 136
            SRS+++ +  V+SV +   G+     G   E   V       I+ KAL +  + Y A ++++P R  EF + PK  Q+VL+QP+S    +I+GAD+ RP    DFGW+QA+S RI
Sbjct:  123 SRSIIDSIPNVRSVLIYEGGKTVLREGVMGESPAVV---PGPILEKALTSEEKTYFARLEILPGR-FEFTYLPKGTQAVLIQPLSPTSALILGADKVRPIASVDFGWIQAISQRI 233          
BLAST of Gvermi11532.t1 vs. uniprot
Match: M2W0Z9_GALSU (Cytochrome c biogenesis protein, putative, Ccb2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W0Z9_GALSU)

HSP 1 Score: 59.3 bits (142), Expect = 1.960e-7
Identity = 30/87 (34.48%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   47 LGKFREQNPVAILRQEGIISK-ALKTGNRAYLADMKVVPVRETEFGFFPKECQSVLVQPVSEDICVIVGADRPRPFTGQDFGWVQAV 132
            LG  +E   VA+    G ++K  L +G  ++LAD+ +V  R  EF + P  C+S+ ++P++E+I +I+G  + RPFT  D  W++++
Sbjct:  186 LGPGQEGQTVAL----GELAKQCLTSGEASFLADLNIVAGRN-EFNYMPSNCKSIYMEPLTENILLILGCGKVRPFTEVDLIWIRSI 267          
The following BLAST results are available for this feature:
BLAST of Gvermi11532.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3ISP7_9FLOR1.450e-5862.86Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
A0A7S1TBU2_9RHOD3.840e-1843.80Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S2ZMS3_9RHOD7.280e-1537.39Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0G2H2_9RHOD1.460e-1437.39Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M2W0Z9_GALSU1.960e-734.48Cytochrome c biogenesis protein, putative, Ccb2 n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021325Cofactor assembly of complex C subunit B, CCB2/CCB4PFAMPF11152CCB2_CCB4coord: 33..136
e-value: 1.5E-18
score: 66.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:751201..751951 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11532.t1Gvermi11532.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 751201..751951 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi11532.t1 ID=Gvermi11532.t1|Name=Gvermi11532.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=166bp
MGGLDVAVGFQGPLGAIVEQGSRSLLEGVEGVKSVAVMVKGEGRFFLGKF
REQNPVAILRQEGIISKALKTGNRAYLADMKVVPVRETEFGFFPKECQSV
LVQPVSEDICVIVGADRPRPFTGQDFGWVQAVSDRIGASLLDRRTVVPHF
GSRNPLTVVLRKTNV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021325CCB2/CCB4