Gvermi11532.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11532.t1
Unique NameGvermi11532.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:751201..751951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321332.CYB_0108
PFAMsCCB2_CCB4
Max annot lvl1117|Cyanobacteria
Evalue4.69e-13
EggNOG OGsCOG2203@1|root,COG2203@2|Bacteria,1G2RW@1117|Cyanobacteria,1GYY8@1129|Synechococcus
DescriptionCofactor assembly of complex C subunit B, CCB2/CCB4
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11532Gvermi11532Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 751201..751951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11532.t1Gvermi11532.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 751201..751951 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11532.t1.stop1Gvermi11532.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 751201..751203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11532.t1.CDS1Gvermi11532.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 751201..751271 -
Gvermi11532.t1.CDS2Gvermi11532.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 751438..751570 -
Gvermi11532.t1.CDS3Gvermi11532.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 751658..751951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11532.t1.exon1Gvermi11532.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 751201..751271 -
Gvermi11532.t1.exon2Gvermi11532.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 751438..751570 -
Gvermi11532.t1.exon3Gvermi11532.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 751658..751951 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11532.t1.intron1Gvermi11532.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 751272..751437 -
Gvermi11532.t1.intron2Gvermi11532.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 751571..751657 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11532.t1.start1Gvermi11532.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 751949..751951 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11532.t1 ID=Gvermi11532.t1|Name=Gvermi11532.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=166bp
MGGLDVAVGFQGPLGAIVEQGSRSLLEGVEGVKSVAVMVKGEGRFFLGKF
REQNPVAILRQEGIISKALKTGNRAYLADMKVVPVRETEFGFFPKECQSV
LVQPVSEDICVIVGADRPRPFTGQDFGWVQAVSDRIGASLLDRRTVVPHF
GSRNPLTVVLRKTNV*
back to top

spliced messenger RNA

>Gvermi11532.t1 ID=Gvermi11532.t1|Name=Gvermi11532.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=498bp|location=Sequence derived from alignment at ScGOVlb_3404:751201..751951- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGTTTGGATGTGGCAGTAGGCTTTCAAGGACCTCTAGGAGCAAT
TGTCGAGCAAGGATCTCGATCTCTCCTCGAAGGTGTGGAGGGTGTCAAAA
GTGTCGCGGTAATGGTCAAAGGTGAAGGAAGATTCTTTCTGGGCAAGTTT
CGAGAACAAAACCCCGTCGCAATTCTTAGACAAGAGGGGATCATTTCAAA
AGCTTTAAAGACAGGAAATCGTGCGTACTTGGCTGATATGAAAGTCGTTC
CAGTACGCGAGACGGAATTTGGATTTTTCCCAAAGGAATGTCAGTCCGTA
CTTGTTCAACCAGTGAGCGAAGACATTTGTGTCATTGTGGGCGCGGACCG
CCCAAGGCCATTCACGGGGCAAGATTTTGGGTGGGTACAGGCCGTAAGCG
ATCGAATTGGAGCATCTTTACTTGATCGAAGAACAGTCGTGCCACACTTT
GGTAGCAGAAACCCACTGACGGTCGTTTTACGAAAGACAAATGTTTAA
back to top

protein sequence of Gvermi11532.t1

>Gvermi11532.t1 ID=Gvermi11532.t1|Name=Gvermi11532.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=166bp
MGGLDVAVGFQGPLGAIVEQGSRSLLEGVEGVKSVAVMVKGEGRFFLGKF
REQNPVAILRQEGIISKALKTGNRAYLADMKVVPVRETEFGFFPKECQSV
LVQPVSEDICVIVGADRPRPFTGQDFGWVQAVSDRIGASLLDRRTVVPHF
GSRNPLTVVLRKTNV*
back to top

mRNA from alignment at ScGOVlb_3404:751201..751951-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11532.t1 ID=Gvermi11532.t1|Name=Gvermi11532.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=751bp|location=Sequence derived from alignment at ScGOVlb_3404:751201..751951- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGGTTTGGATGTGGCAGTAGGCTTTCAAGGACCTCTAGGAGCAAT
TGTCGAGCAAGGATCTCGATCTCTCCTCGAAGGTGTGGAGGGTGTCAAAA
GTGTCGCGGTAATGGTCAAAGGTGAAGGAAGATTCTTTCTGGGCAAGTTT
CGAGAACAAAACCCCGTCGCAATTCTTAGACAAGAGGGGATCATTTCAAA
AGCTTTAAAGACAGGAAATCGTGCGTACTTGGCTGATATGAAAGTCGTTC
CAGTACGCGAGACGGAATTTGGATTTTTCCCAAAGGAATGTCAGGTATGT
GGGAAACCATAGTTCTTTCTGCGCTCATCGACGGGGGAGTTGATCAGCTT
CTGAGATGTTCTGACACTCCATGTGCTACAGTCCGTACTTGTTCAACCAG
TGAGCGAAGACATTTGTGTCATTGTGGGCGCGGACCGCCCAAGGCCATTC
ACGGGGCAAGATTTTGGGTGGGTACAGGCCGTAAGCGATCGAATTGGAGC
ATCTTTACTTGATCGTGGACTACAAATCGGGGGCGTTAAGAAATAGAAGT
ACACTAGTCGTGGGCCTTTGACTTGTTCGAAAAGCCGTAGACATACTCTC
GCTGCGCACATCCATCACCAAAACAAGTTGCTTGTGTGCGGACCTAAAGC
ATTCATGATCCTGTCTTTGTTGATTATCAGGAAGAACAGTCGTGCCACAC
TTTGGTAGCAGAAACCCACTGACGGTCGTTTTACGAAAGACAAATGTTTA
A
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:751201..751951-

>Gvermi11532.t1 ID=Gvermi11532.t1|Name=Gvermi11532.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=498bp|location=Sequence derived from alignment at ScGOVlb_3404:751201..751951- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGGTTTGGATGTGGCAGTAGGCTTTCAAGGACCTCTAGGAGCAAT
TGTCGAGCAAGGATCTCGATCTCTCCTCGAAGGTGTGGAGGGTGTCAAAA
GTGTCGCGGTAATGGTCAAAGGTGAAGGAAGATTCTTTCTGGGCAAGTTT
CGAGAACAAAACCCCGTCGCAATTCTTAGACAAGAGGGGATCATTTCAAA
AGCTTTAAAGACAGGAAATCGTGCGTACTTGGCTGATATGAAAGTCGTTC
CAGTACGCGAGACGGAATTTGGATTTTTCCCAAAGGAATGTCAGTCCGTA
CTTGTTCAACCAGTGAGCGAAGACATTTGTGTCATTGTGGGCGCGGACCG
CCCAAGGCCATTCACGGGGCAAGATTTTGGGTGGGTACAGGCCGTAAGCG
ATCGAATTGGAGCATCTTTACTTGATCGAAGAACAGTCGTGCCACACTTT
GGTAGCAGAAACCCACTGACGGTCGTTTTACGAAAGACAAATGTTTAA
back to top