Gvermi8020.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8020.t1
Unique Name	Gvermi8020.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	506

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:674793..676310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7176.CPIJ017918-PA
Preferred name	PUS3
PFAMs	PseudoU_synth_1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K01855
GOs	GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481
Evalue	6.35e-68
EggNOG OGs	COG0101@1\|root,KOG2554@2759\|Eukaryota,38DRB@33154\|Opisthokonta,3B9CT@33208\|Metazoa,3CZ92@33213\|Bilateria,41VYV@6656\|Arthropoda,3SG6J@50557\|Insecta,458I1@7147\|Diptera,45ESB@7148\|Nematocera
EC	5.4.99.45
Description	tRNA pseudouridine synthase
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8020	Gvermi8020	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 674793..676310 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8020.t1.start1	Gvermi8020.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 674793..674795 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8020.t1.CDS1	Gvermi8020.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 674793..676310 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8020.t1.exon1	Gvermi8020.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 674793..676310 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8020.t1.stop1	Gvermi8020.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 676308..676310 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8020.t1	Gvermi8020.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 674793..676310 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:674793..676310+
coding sequence from alignment at ScGOVlb_24226:674793..676310+

mRNA sequence

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=506bp
MPPPRNPSEKELRAMSREQLLSLALTNLFPNSSVTEQVGKVSRSSPGPLD
GEPPRKKPRQFDMTRYGQRLVALRIMYTGWLFHGFASQIDSDNTVEAHLF
SSLLKTRLISSRLDCRYSRAGRTDVGVSAACQVIGICLRSNVKPPSTGHR
ELDYVKIINGTLPQGIRCTGWTPVSDGASPFPQVYDGDPLPIQKYWTAVK
QGQIEETVPIRRPGQPFSARFDASYRSYKYFFPRGDLNIDAMREGASFFE
GTHDFRNFCRIDENVTNFERHMFSVQVRRMHDDALVLDGKDDEYTIYFIF
VKGQAFLWHQVRCMTAVLFDIGMGNEQPDLIKRMLADAKTCSGQFSNGRP
QYKMASPVPLLLYECTYPRTVLHFPQTFERNFHPAVASSVDLRRSSFERA
NSAIAKNFAAEAAKMSILQTVLKDQDELVSYIPENETGHASKSFKELRGP
RNFVIDHMHRRHIPYEERLTDDSLKMKQKKAALKLKSRNRLHISTSCTPE
THQSP*

spliced messenger RNA

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_24226:674793..676310+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCTCCTCGCAACCCGAGTGAGAAAGAACTTCGCGCAATGTCACG
CGAGCAGCTACTTTCTCTCGCCTTAACAAACCTCTTTCCTAATTCCTCTG
TTACTGAGCAAGTCGGAAAAGTCTCTCGATCTAGCCCAGGGCCACTAGAC
GGGGAACCGCCTCGGAAAAAACCACGTCAGTTTGACATGACCCGATACGG
ACAAAGATTGGTAGCGCTGCGAATTATGTACACAGGCTGGCTTTTTCATG
GCTTCGCCTCTCAGATTGATTCAGACAACACAGTTGAAGCCCATCTGTTT
TCATCTTTGCTCAAAACTCGTCTGATCTCCTCTCGCCTCGACTGTCGTTA
CTCTCGGGCAGGGCGAACCGATGTTGGCGTCTCAGCCGCATGTCAAGTAA
TTGGTATTTGCCTCCGAAGCAATGTGAAGCCTCCGTCGACTGGTCATAGA
GAGCTTGACTACGTCAAAATTATAAATGGCACATTGCCGCAAGGCATTCG
ATGTACCGGATGGACTCCTGTATCAGATGGCGCTTCCCCTTTCCCTCAAG
TTTACGACGGCGATCCCCTACCGATACAAAAGTACTGGACGGCTGTAAAA
CAAGGACAAATCGAGGAAACTGTCCCAATCCGGAGACCCGGTCAGCCCTT
TTCTGCTCGTTTTGATGCTTCGTATAGATCGTACAAATACTTctttccaa
gaggtgatcttaatatcgacgctatgcgcgagggtgcCTCGTTTTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGAAAATGTCACAAA
CTTTGAACGCCATATGTTTAGCGTTCAAGTTCGGCGTATGCATGACGATG
CCTTGGTTCTTGACGGGAAAGATGACGAGTACACAATATATTTCATCTTT
GTCAAGGGCCAGGCCTTTCTTTGGCATCAAGTTCGATGTATGACTGCGGT
CCTTTTTGACATTGGTATGGGCAACGAGCAACCAGATCTTATCAAAAGAA
TGCTAGCGGATGCCAAGACATGTAGTGGTCAGTTTTCGAACGGTAGACCG
CAGTACAAGATGGCATCACCAGTACCACTTCTTTTGTACGAATGCACGTA
CCCAAGAACTGTGTTACACTTTCCGCAAACATTTGAGCGTAATTTTCATC
CTGCTGTCGCGAGTTCTGTCGATCTGAGACGAAGCTCGTTTGAGAGAGCA
AACTCGGCCATTGCCAAAAATTTTGCAGCGGAAGCTGCAAAAATGTCAAT
CTTGCAGACAGTGCTTAAAGATCAAGACGAACTTGTTTCATACATCCCAG
AAAACGAAACAGGGCATGCCTCTAAATCGTTTAAAGAGCTTCGTGGACCA
AGAAATTTTGTAATCGACCATATGCATCGTCGACATATCCCGTACGAAGA
GAGGCTAACAGACGATTCTTTGAAAATGAAACAGAAGAAGGCTGCCTTGA
AGCTCAAGTCTAGAAACCGTTTGCATATCAGTACATCTTGTACACCAGAA
ACACATCAGTCACCATGA

protein sequence of Gvermi8020.t1

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=506bp
MPPPRNPSEKELRAMSREQLLSLALTNLFPNSSVTEQVGKVSRSSPGPLD
GEPPRKKPRQFDMTRYGQRLVALRIMYTGWLFHGFASQIDSDNTVEAHLF
SSLLKTRLISSRLDCRYSRAGRTDVGVSAACQVIGICLRSNVKPPSTGHR
ELDYVKIINGTLPQGIRCTGWTPVSDGASPFPQVYDGDPLPIQKYWTAVK
QGQIEETVPIRRPGQPFSARFDASYRSYKYFFPRGDLNIDAMREGASFFE
GTHDFRNFCRIDENVTNFERHMFSVQVRRMHDDALVLDGKDDEYTIYFIF
VKGQAFLWHQVRCMTAVLFDIGMGNEQPDLIKRMLADAKTCSGQFSNGRP
QYKMASPVPLLLYECTYPRTVLHFPQTFERNFHPAVASSVDLRRSSFERA
NSAIAKNFAAEAAKMSILQTVLKDQDELVSYIPENETGHASKSFKELRGP
RNFVIDHMHRRHIPYEERLTDDSLKMKQKKAALKLKSRNRLHISTSCTPE
THQSP*

mRNA from alignment at ScGOVlb_24226:674793..676310+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_24226:674793..676310+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCTCCTCGCAACCCGAGTGAGAAAGAACTTCGCGCAATGTCACG
CGAGCAGCTACTTTCTCTCGCCTTAACAAACCTCTTTCCTAATTCCTCTG
TTACTGAGCAAGTCGGAAAAGTCTCTCGATCTAGCCCAGGGCCACTAGAC
GGGGAACCGCCTCGGAAAAAACCACGTCAGTTTGACATGACCCGATACGG
ACAAAGATTGGTAGCGCTGCGAATTATGTACACAGGCTGGCTTTTTCATG
GCTTCGCCTCTCAGATTGATTCAGACAACACAGTTGAAGCCCATCTGTTT
TCATCTTTGCTCAAAACTCGTCTGATCTCCTCTCGCCTCGACTGTCGTTA
CTCTCGGGCAGGGCGAACCGATGTTGGCGTCTCAGCCGCATGTCAAGTAA
TTGGTATTTGCCTCCGAAGCAATGTGAAGCCTCCGTCGACTGGTCATAGA
GAGCTTGACTACGTCAAAATTATAAATGGCACATTGCCGCAAGGCATTCG
ATGTACCGGATGGACTCCTGTATCAGATGGCGCTTCCCCTTTCCCTCAAG
TTTACGACGGCGATCCCCTACCGATACAAAAGTACTGGACGGCTGTAAAA
CAAGGACAAATCGAGGAAACTGTCCCAATCCGGAGACCCGGTCAGCCCTT
TTCTGCTCGTTTTGATGCTTCGTATAGATCGTACAAATACTTctttccaa
gaggtgatcttaatatcgacgctatgcgcgagggtgcCTCGTTTTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGAAAATGTCACAAA
CTTTGAACGCCATATGTTTAGCGTTCAAGTTCGGCGTATGCATGACGATG
CCTTGGTTCTTGACGGGAAAGATGACGAGTACACAATATATTTCATCTTT
GTCAAGGGCCAGGCCTTTCTTTGGCATCAAGTTCGATGTATGACTGCGGT
CCTTTTTGACATTGGTATGGGCAACGAGCAACCAGATCTTATCAAAAGAA
TGCTAGCGGATGCCAAGACATGTAGTGGTCAGTTTTCGAACGGTAGACCG
CAGTACAAGATGGCATCACCAGTACCACTTCTTTTGTACGAATGCACGTA
CCCAAGAACTGTGTTACACTTTCCGCAAACATTTGAGCGTAATTTTCATC
CTGCTGTCGCGAGTTCTGTCGATCTGAGACGAAGCTCGTTTGAGAGAGCA
AACTCGGCCATTGCCAAAAATTTTGCAGCGGAAGCTGCAAAAATGTCAAT
CTTGCAGACAGTGCTTAAAGATCAAGACGAACTTGTTTCATACATCCCAG
AAAACGAAACAGGGCATGCCTCTAAATCGTTTAAAGAGCTTCGTGGACCA
AGAAATTTTGTAATCGACCATATGCATCGTCGACATATCCCGTACGAAGA
GAGGCTAACAGACGATTCTTTGAAAATGAAACAGAAGAAGGCTGCCTTGA
AGCTCAAGTCTAGAAACCGTTTGCATATCAGTACATCTTGTACACCAGAA
ACACATCAGTCACCATGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:674793..676310+

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1518bp|location=Sequence derived from alignment at ScGOVlb_24226:674793..676310+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCTCCTCGCAACCCGAGTGAGAAAGAACTTCGCGCAATGTCACG
CGAGCAGCTACTTTCTCTCGCCTTAACAAACCTCTTTCCTAATTCCTCTG
TTACTGAGCAAGTCGGAAAAGTCTCTCGATCTAGCCCAGGGCCACTAGAC
GGGGAACCGCCTCGGAAAAAACCACGTCAGTTTGACATGACCCGATACGG
ACAAAGATTGGTAGCGCTGCGAATTATGTACACAGGCTGGCTTTTTCATG
GCTTCGCCTCTCAGATTGATTCAGACAACACAGTTGAAGCCCATCTGTTT
TCATCTTTGCTCAAAACTCGTCTGATCTCCTCTCGCCTCGACTGTCGTTA
CTCTCGGGCAGGGCGAACCGATGTTGGCGTCTCAGCCGCATGTCAAGTAA
TTGGTATTTGCCTCCGAAGCAATGTGAAGCCTCCGTCGACTGGTCATAGA
GAGCTTGACTACGTCAAAATTATAAATGGCACATTGCCGCAAGGCATTCG
ATGTACCGGATGGACTCCTGTATCAGATGGCGCTTCCCCTTTCCCTCAAG
TTTACGACGGCGATCCCCTACCGATACAAAAGTACTGGACGGCTGTAAAA
CAAGGACAAATCGAGGAAACTGTCCCAATCCGGAGACCCGGTCAGCCCTT
TTCTGCTCGTTTTGATGCTTCGTATAGATCGTACAAATACTTctttccaa
gaggtgatcttaatatcgacgctatgcgcgagggtgcCTCGTTTTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGAAAATGTCACAAA
CTTTGAACGCCATATGTTTAGCGTTCAAGTTCGGCGTATGCATGACGATG
CCTTGGTTCTTGACGGGAAAGATGACGAGTACACAATATATTTCATCTTT
GTCAAGGGCCAGGCCTTTCTTTGGCATCAAGTTCGATGTATGACTGCGGT
CCTTTTTGACATTGGTATGGGCAACGAGCAACCAGATCTTATCAAAAGAA
TGCTAGCGGATGCCAAGACATGTAGTGGTCAGTTTTCGAACGGTAGACCG
CAGTACAAGATGGCATCACCAGTACCACTTCTTTTGTACGAATGCACGTA
CCCAAGAACTGTGTTACACTTTCCGCAAACATTTGAGCGTAATTTTCATC
CTGCTGTCGCGAGTTCTGTCGATCTGAGACGAAGCTCGTTTGAGAGAGCA
AACTCGGCCATTGCCAAAAATTTTGCAGCGGAAGCTGCAAAAATGTCAAT
CTTGCAGACAGTGCTTAAAGATCAAGACGAACTTGTTTCATACATCCCAG
AAAACGAAACAGGGCATGCCTCTAAATCGTTTAAAGAGCTTCGTGGACCA
AGAAATTTTGTAATCGACCATATGCATCGTCGACATATCCCGTACGAAGA
GAGGCTAACAGACGATTCTTTGAAAATGAAACAGAAGAAGGCTGCCTTGA
AGCTCAAGTCTAGAAACCGTTTGCATATCAGTACATCTTGTACACCAGAA
ACACATCAGTCACCATGA