Gvermi8020.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8020.t1
Unique NameGvermi8020.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:674793..676310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7176.CPIJ017918-PA
Preferred namePUS3
PFAMsPseudoU_synth_1
Max annot lvl33208|Metazoa
KEGG koko:K01855
GOsGO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481
Evalue6.35e-68
EggNOG OGsCOG0101@1|root,KOG2554@2759|Eukaryota,38DRB@33154|Opisthokonta,3B9CT@33208|Metazoa,3CZ92@33213|Bilateria,41VYV@6656|Arthropoda,3SG6J@50557|Insecta,458I1@7147|Diptera,45ESB@7148|Nematocera
EC5.4.99.45
DescriptiontRNA pseudouridine synthase
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8020Gvermi8020Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 674793..676310 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8020.t1.start1Gvermi8020.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 674793..674795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8020.t1.CDS1Gvermi8020.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 674793..676310 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8020.t1.exon1Gvermi8020.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 674793..676310 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8020.t1.stop1Gvermi8020.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 676308..676310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8020.t1Gvermi8020.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 674793..676310 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=506bp
MPPPRNPSEKELRAMSREQLLSLALTNLFPNSSVTEQVGKVSRSSPGPLD
GEPPRKKPRQFDMTRYGQRLVALRIMYTGWLFHGFASQIDSDNTVEAHLF
SSLLKTRLISSRLDCRYSRAGRTDVGVSAACQVIGICLRSNVKPPSTGHR
ELDYVKIINGTLPQGIRCTGWTPVSDGASPFPQVYDGDPLPIQKYWTAVK
QGQIEETVPIRRPGQPFSARFDASYRSYKYFFPRGDLNIDAMREGASFFE
GTHDFRNFCRIDENVTNFERHMFSVQVRRMHDDALVLDGKDDEYTIYFIF
VKGQAFLWHQVRCMTAVLFDIGMGNEQPDLIKRMLADAKTCSGQFSNGRP
QYKMASPVPLLLYECTYPRTVLHFPQTFERNFHPAVASSVDLRRSSFERA
NSAIAKNFAAEAAKMSILQTVLKDQDELVSYIPENETGHASKSFKELRGP
RNFVIDHMHRRHIPYEERLTDDSLKMKQKKAALKLKSRNRLHISTSCTPE
THQSP*
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spliced messenger RNA

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_24226:674793..676310+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCTCCTCGCAACCCGAGTGAGAAAGAACTTCGCGCAATGTCACG
CGAGCAGCTACTTTCTCTCGCCTTAACAAACCTCTTTCCTAATTCCTCTG
TTACTGAGCAAGTCGGAAAAGTCTCTCGATCTAGCCCAGGGCCACTAGAC
GGGGAACCGCCTCGGAAAAAACCACGTCAGTTTGACATGACCCGATACGG
ACAAAGATTGGTAGCGCTGCGAATTATGTACACAGGCTGGCTTTTTCATG
GCTTCGCCTCTCAGATTGATTCAGACAACACAGTTGAAGCCCATCTGTTT
TCATCTTTGCTCAAAACTCGTCTGATCTCCTCTCGCCTCGACTGTCGTTA
CTCTCGGGCAGGGCGAACCGATGTTGGCGTCTCAGCCGCATGTCAAGTAA
TTGGTATTTGCCTCCGAAGCAATGTGAAGCCTCCGTCGACTGGTCATAGA
GAGCTTGACTACGTCAAAATTATAAATGGCACATTGCCGCAAGGCATTCG
ATGTACCGGATGGACTCCTGTATCAGATGGCGCTTCCCCTTTCCCTCAAG
TTTACGACGGCGATCCCCTACCGATACAAAAGTACTGGACGGCTGTAAAA
CAAGGACAAATCGAGGAAACTGTCCCAATCCGGAGACCCGGTCAGCCCTT
TTCTGCTCGTTTTGATGCTTCGTATAGATCGTACAAATACTTctttccaa
gaggtgatcttaatatcgacgctatgcgcgagggtgcCTCGTTTTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGAAAATGTCACAAA
CTTTGAACGCCATATGTTTAGCGTTCAAGTTCGGCGTATGCATGACGATG
CCTTGGTTCTTGACGGGAAAGATGACGAGTACACAATATATTTCATCTTT
GTCAAGGGCCAGGCCTTTCTTTGGCATCAAGTTCGATGTATGACTGCGGT
CCTTTTTGACATTGGTATGGGCAACGAGCAACCAGATCTTATCAAAAGAA
TGCTAGCGGATGCCAAGACATGTAGTGGTCAGTTTTCGAACGGTAGACCG
CAGTACAAGATGGCATCACCAGTACCACTTCTTTTGTACGAATGCACGTA
CCCAAGAACTGTGTTACACTTTCCGCAAACATTTGAGCGTAATTTTCATC
CTGCTGTCGCGAGTTCTGTCGATCTGAGACGAAGCTCGTTTGAGAGAGCA
AACTCGGCCATTGCCAAAAATTTTGCAGCGGAAGCTGCAAAAATGTCAAT
CTTGCAGACAGTGCTTAAAGATCAAGACGAACTTGTTTCATACATCCCAG
AAAACGAAACAGGGCATGCCTCTAAATCGTTTAAAGAGCTTCGTGGACCA
AGAAATTTTGTAATCGACCATATGCATCGTCGACATATCCCGTACGAAGA
GAGGCTAACAGACGATTCTTTGAAAATGAAACAGAAGAAGGCTGCCTTGA
AGCTCAAGTCTAGAAACCGTTTGCATATCAGTACATCTTGTACACCAGAA
ACACATCAGTCACCATGA
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protein sequence of Gvermi8020.t1

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=506bp
MPPPRNPSEKELRAMSREQLLSLALTNLFPNSSVTEQVGKVSRSSPGPLD
GEPPRKKPRQFDMTRYGQRLVALRIMYTGWLFHGFASQIDSDNTVEAHLF
SSLLKTRLISSRLDCRYSRAGRTDVGVSAACQVIGICLRSNVKPPSTGHR
ELDYVKIINGTLPQGIRCTGWTPVSDGASPFPQVYDGDPLPIQKYWTAVK
QGQIEETVPIRRPGQPFSARFDASYRSYKYFFPRGDLNIDAMREGASFFE
GTHDFRNFCRIDENVTNFERHMFSVQVRRMHDDALVLDGKDDEYTIYFIF
VKGQAFLWHQVRCMTAVLFDIGMGNEQPDLIKRMLADAKTCSGQFSNGRP
QYKMASPVPLLLYECTYPRTVLHFPQTFERNFHPAVASSVDLRRSSFERA
NSAIAKNFAAEAAKMSILQTVLKDQDELVSYIPENETGHASKSFKELRGP
RNFVIDHMHRRHIPYEERLTDDSLKMKQKKAALKLKSRNRLHISTSCTPE
THQSP*
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mRNA from alignment at ScGOVlb_24226:674793..676310+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1518bp|location=Sequence derived from alignment at ScGOVlb_24226:674793..676310+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCTCCTCGCAACCCGAGTGAGAAAGAACTTCGCGCAATGTCACG
CGAGCAGCTACTTTCTCTCGCCTTAACAAACCTCTTTCCTAATTCCTCTG
TTACTGAGCAAGTCGGAAAAGTCTCTCGATCTAGCCCAGGGCCACTAGAC
GGGGAACCGCCTCGGAAAAAACCACGTCAGTTTGACATGACCCGATACGG
ACAAAGATTGGTAGCGCTGCGAATTATGTACACAGGCTGGCTTTTTCATG
GCTTCGCCTCTCAGATTGATTCAGACAACACAGTTGAAGCCCATCTGTTT
TCATCTTTGCTCAAAACTCGTCTGATCTCCTCTCGCCTCGACTGTCGTTA
CTCTCGGGCAGGGCGAACCGATGTTGGCGTCTCAGCCGCATGTCAAGTAA
TTGGTATTTGCCTCCGAAGCAATGTGAAGCCTCCGTCGACTGGTCATAGA
GAGCTTGACTACGTCAAAATTATAAATGGCACATTGCCGCAAGGCATTCG
ATGTACCGGATGGACTCCTGTATCAGATGGCGCTTCCCCTTTCCCTCAAG
TTTACGACGGCGATCCCCTACCGATACAAAAGTACTGGACGGCTGTAAAA
CAAGGACAAATCGAGGAAACTGTCCCAATCCGGAGACCCGGTCAGCCCTT
TTCTGCTCGTTTTGATGCTTCGTATAGATCGTACAAATACTTctttccaa
gaggtgatcttaatatcgacgctatgcgcgagggtgcCTCGTTTTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGAAAATGTCACAAA
CTTTGAACGCCATATGTTTAGCGTTCAAGTTCGGCGTATGCATGACGATG
CCTTGGTTCTTGACGGGAAAGATGACGAGTACACAATATATTTCATCTTT
GTCAAGGGCCAGGCCTTTCTTTGGCATCAAGTTCGATGTATGACTGCGGT
CCTTTTTGACATTGGTATGGGCAACGAGCAACCAGATCTTATCAAAAGAA
TGCTAGCGGATGCCAAGACATGTAGTGGTCAGTTTTCGAACGGTAGACCG
CAGTACAAGATGGCATCACCAGTACCACTTCTTTTGTACGAATGCACGTA
CCCAAGAACTGTGTTACACTTTCCGCAAACATTTGAGCGTAATTTTCATC
CTGCTGTCGCGAGTTCTGTCGATCTGAGACGAAGCTCGTTTGAGAGAGCA
AACTCGGCCATTGCCAAAAATTTTGCAGCGGAAGCTGCAAAAATGTCAAT
CTTGCAGACAGTGCTTAAAGATCAAGACGAACTTGTTTCATACATCCCAG
AAAACGAAACAGGGCATGCCTCTAAATCGTTTAAAGAGCTTCGTGGACCA
AGAAATTTTGTAATCGACCATATGCATCGTCGACATATCCCGTACGAAGA
GAGGCTAACAGACGATTCTTTGAAAATGAAACAGAAGAAGGCTGCCTTGA
AGCTCAAGTCTAGAAACCGTTTGCATATCAGTACATCTTGTACACCAGAA
ACACATCAGTCACCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:674793..676310+

>Gvermi8020.t1 ID=Gvermi8020.t1|Name=Gvermi8020.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1518bp|location=Sequence derived from alignment at ScGOVlb_24226:674793..676310+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCTCCTCGCAACCCGAGTGAGAAAGAACTTCGCGCAATGTCACG
CGAGCAGCTACTTTCTCTCGCCTTAACAAACCTCTTTCCTAATTCCTCTG
TTACTGAGCAAGTCGGAAAAGTCTCTCGATCTAGCCCAGGGCCACTAGAC
GGGGAACCGCCTCGGAAAAAACCACGTCAGTTTGACATGACCCGATACGG
ACAAAGATTGGTAGCGCTGCGAATTATGTACACAGGCTGGCTTTTTCATG
GCTTCGCCTCTCAGATTGATTCAGACAACACAGTTGAAGCCCATCTGTTT
TCATCTTTGCTCAAAACTCGTCTGATCTCCTCTCGCCTCGACTGTCGTTA
CTCTCGGGCAGGGCGAACCGATGTTGGCGTCTCAGCCGCATGTCAAGTAA
TTGGTATTTGCCTCCGAAGCAATGTGAAGCCTCCGTCGACTGGTCATAGA
GAGCTTGACTACGTCAAAATTATAAATGGCACATTGCCGCAAGGCATTCG
ATGTACCGGATGGACTCCTGTATCAGATGGCGCTTCCCCTTTCCCTCAAG
TTTACGACGGCGATCCCCTACCGATACAAAAGTACTGGACGGCTGTAAAA
CAAGGACAAATCGAGGAAACTGTCCCAATCCGGAGACCCGGTCAGCCCTT
TTCTGCTCGTTTTGATGCTTCGTATAGATCGTACAAATACTTctttccaa
gaggtgatcttaatatcgacgctatgcgcgagggtgcCTCGTTTTTTGAA
GGTACGCATGATTTTCGAAACTTTTGTCGCATCGATGAAAATGTCACAAA
CTTTGAACGCCATATGTTTAGCGTTCAAGTTCGGCGTATGCATGACGATG
CCTTGGTTCTTGACGGGAAAGATGACGAGTACACAATATATTTCATCTTT
GTCAAGGGCCAGGCCTTTCTTTGGCATCAAGTTCGATGTATGACTGCGGT
CCTTTTTGACATTGGTATGGGCAACGAGCAACCAGATCTTATCAAAAGAA
TGCTAGCGGATGCCAAGACATGTAGTGGTCAGTTTTCGAACGGTAGACCG
CAGTACAAGATGGCATCACCAGTACCACTTCTTTTGTACGAATGCACGTA
CCCAAGAACTGTGTTACACTTTCCGCAAACATTTGAGCGTAATTTTCATC
CTGCTGTCGCGAGTTCTGTCGATCTGAGACGAAGCTCGTTTGAGAGAGCA
AACTCGGCCATTGCCAAAAATTTTGCAGCGGAAGCTGCAAAAATGTCAAT
CTTGCAGACAGTGCTTAAAGATCAAGACGAACTTGTTTCATACATCCCAG
AAAACGAAACAGGGCATGCCTCTAAATCGTTTAAAGAGCTTCGTGGACCA
AGAAATTTTGTAATCGACCATATGCATCGTCGACATATCCCGTACGAAGA
GAGGCTAACAGACGATTCTTTGAAAATGAAACAGAAGAAGGCTGCCTTGA
AGCTCAAGTCTAGAAACCGTTTGCATATCAGTACATCTTGTACACCAGAA
ACACATCAGTCACCATGA
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