Gvermi7995.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7995.t1
Unique NameGvermi7995.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:587700..589220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6326.BUX.s00351.105
Preferred nameLMAN2
PFAMsLectin_leg-like
Max annot lvl33208|Metazoa
KEGG koko:K10082,ko:K10083
KEGG Pathwayko04141,map04141
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005537,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0005887,GO:0006457,GO:0006810,GO:0006888,GO:0006890,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0030100,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030246,GO:0031072,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0033036,GO:0036094,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045807,GO:0046907,GO:0048029,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060627,GO:0065007,GO:0070382,GO:0071702,GO:0071705,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:0099503
Evalue2.11e-19
EggNOG OGsKOG3839@1|root,KOG3839@2759|Eukaryota,38FEY@33154|Opisthokonta,3BHC9@33208|Metazoa,3CYPI@33213|Bilateria,40RB7@6231|Nematoda,1KV2I@119089|Chromadorea
DescriptionLegume-like lectin family
COG categoryU
BRITEko00000,ko00001,ko04091,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7995Gvermi7995Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 587700..589220 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7995.t1.stop1Gvermi7995.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 587700..587702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7995.t1.CDS1Gvermi7995.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 587700..589220 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7995.t1.exon1Gvermi7995.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 587700..589220 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7995.t1.start1Gvermi7995.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 589218..589220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7995.t1Gvermi7995.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 587700..589220 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MTPKFLPVLLAFCIPLCMAHVSREERRRKHPQLFQFPYLGAGDPDHTFRQ
PYEPSPYSDPVNGWFQLGTTIITRSRTGRDVVRLTSASQANQGVFYNAIV
TESQNFNGYFDIEIDTVRDSHEPADGMGFFFTRDRPTVGSAMGVAHTFVG
LGIIIDTFSNSRTRNVPYMYAYVSDGTKEWNPDSDGADTELAKGCTLEMN
HQVRVYVQFVDGDLHVGVAMNPRLPSRWHTCFKASGVQLPFSGGGHFSFA
AETGHFFALHEVHDAIFIDESAHSGQGYRSDYYSQQYGTASTTERQQQQA
KDSSRANTQSNAGSTANEKPPEPPKHQTDPNPESRIHRGKDATSSLSGSL
DLQVYEVYNAVSSMLKGLGDQEAQETKLRLEGVRDVTGHLIREMEQQKSD
MSDLVAVLRHLKETAGDLSYAADRFSSQLQGLHNSLRTLREKTHGISDSH
DELHEELMDHHESITEQSSGGSGTLIMFLLIQGLLGAGVYYVNKMALAAR
KAGRMV*
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spliced messenger RNA

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:587700..589220- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCTAAATTTCTTCCTGTGCTGCTCGCGTTTTGCATCCCTTTATG
CATGGCCCATGTCTCCCGGGAAGAGAGACGAAGAAAGCACCCTCAGCTGT
TCCAATTTCCATACCTTGGAGCCGGCGATCCAGACCATACCTTCCGTCAG
CCGTATGAGCCAAGTCCATACAGCGATCCTGTCAATGGATGGTTTCAATT
GGGTACCACCATCATCACTCGCAGTCGAACAGGCCGCGACGTAGTTCGTC
TCACCTCTGCGAGCCAGGCCAATCAGGGTGTTTTTTACAACGCCATCGTG
ACCGAATCCCAGAATTTCAATGGTTACTTTGACATTGAGATAGATACTGT
CCGAGACAGCCATGAACCGGCCGATGGTATGGGATTCTTTTTTACGCGCG
ACAGACCTACGGTTGGTTCAGCCATGGGAGTCGCACACACCTTTGTTGGT
TTGGGTATTATTATTGACACCTTTTCTAACTCACGCACTAGAAATGTGCC
CTACATGTATGCCTATGTGTCGGATGGCACAAAGGAGTGGAACCCCGATA
GCGACGGAGCTGATACTGAGCTCGCGAAAGGGTGTACCTTGGAAATGAAT
CATCAGGTTCGTGTGTATGTACAGTTTGTTGATGGGGATCTCCACGTGGG
TGTTGCCATGAACCCGCGTTTACCTAGTCGATGGCACACTTGTTTCAAGG
CATCTGGCGTACAATTGCCGTTCTCCGGCGGGGGCCACTTTTCGTTTGCC
GCTGAAACAGGGCATTTCTTCGCGCTGCACGAAGTACATGATGCTATTTT
TATCGACGAGTCTGCGCACAGTGGGCAAGGATATCGTTCAGATTACTATT
CTCAACAATATGGTACCGCTTCCACAACAGAAAGACAACAGCAGCAAGCA
AAGGACAGCTCGCGCGCGAATACGCAGTCGAACGCAGGTAGCACAGCCAA
TGAGAAACCCCCCGAGCCACCAAAGCATCAGACCGATCCAAACCCAGAGT
CGCGCATACACCGTGGCAAAGATGCCACATCGTCTCTGTCGGGGTCACTG
GATCTACAAGTTTATGAGGTTTACAACGCAGTCTCTTCGATGCTCAAAGG
TCTCGGAGACCAAGAAGCTCAGGAGACCAAGCTCAGATTGGAGGGTGTGC
GTGATGTAACCGGTCACCTTATCCGCGAAATGGAGCAACAAAAGAGTGAT
ATGTCTGATTTGGTTGCTGTTCTGCGCCATTTGAAGGAAACCGCCGGAGA
TTTATCGTACGCGGCTGATCGATTTTCGAGTCAATTGCAAGGTCTTCATA
ATTCGTTGCGCACGTTGCGGGAGAAAACGCATGGCATTTCTGACTCCCAT
GACGAGCTGCACGAGGAACTAATGGATCATCATGAAAGCATTACCGAACA
AAGTTCTGGCGGAAGTGGAACCCTGATTATGTTCCTGCTCATTCAGGGTT
TGTTGGGGGCCGGTGTGTACTATGTTAATAAGATGGCCCTGGCCGCGCGA
AAAGCGGGTCGCATGGTGTAG
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protein sequence of Gvermi7995.t1

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MTPKFLPVLLAFCIPLCMAHVSREERRRKHPQLFQFPYLGAGDPDHTFRQ
PYEPSPYSDPVNGWFQLGTTIITRSRTGRDVVRLTSASQANQGVFYNAIV
TESQNFNGYFDIEIDTVRDSHEPADGMGFFFTRDRPTVGSAMGVAHTFVG
LGIIIDTFSNSRTRNVPYMYAYVSDGTKEWNPDSDGADTELAKGCTLEMN
HQVRVYVQFVDGDLHVGVAMNPRLPSRWHTCFKASGVQLPFSGGGHFSFA
AETGHFFALHEVHDAIFIDESAHSGQGYRSDYYSQQYGTASTTERQQQQA
KDSSRANTQSNAGSTANEKPPEPPKHQTDPNPESRIHRGKDATSSLSGSL
DLQVYEVYNAVSSMLKGLGDQEAQETKLRLEGVRDVTGHLIREMEQQKSD
MSDLVAVLRHLKETAGDLSYAADRFSSQLQGLHNSLRTLREKTHGISDSH
DELHEELMDHHESITEQSSGGSGTLIMFLLIQGLLGAGVYYVNKMALAAR
KAGRMV*
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mRNA from alignment at ScGOVlb_24226:587700..589220-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:587700..589220- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCTAAATTTCTTCCTGTGCTGCTCGCGTTTTGCATCCCTTTATG
CATGGCCCATGTCTCCCGGGAAGAGAGACGAAGAAAGCACCCTCAGCTGT
TCCAATTTCCATACCTTGGAGCCGGCGATCCAGACCATACCTTCCGTCAG
CCGTATGAGCCAAGTCCATACAGCGATCCTGTCAATGGATGGTTTCAATT
GGGTACCACCATCATCACTCGCAGTCGAACAGGCCGCGACGTAGTTCGTC
TCACCTCTGCGAGCCAGGCCAATCAGGGTGTTTTTTACAACGCCATCGTG
ACCGAATCCCAGAATTTCAATGGTTACTTTGACATTGAGATAGATACTGT
CCGAGACAGCCATGAACCGGCCGATGGTATGGGATTCTTTTTTACGCGCG
ACAGACCTACGGTTGGTTCAGCCATGGGAGTCGCACACACCTTTGTTGGT
TTGGGTATTATTATTGACACCTTTTCTAACTCACGCACTAGAAATGTGCC
CTACATGTATGCCTATGTGTCGGATGGCACAAAGGAGTGGAACCCCGATA
GCGACGGAGCTGATACTGAGCTCGCGAAAGGGTGTACCTTGGAAATGAAT
CATCAGGTTCGTGTGTATGTACAGTTTGTTGATGGGGATCTCCACGTGGG
TGTTGCCATGAACCCGCGTTTACCTAGTCGATGGCACACTTGTTTCAAGG
CATCTGGCGTACAATTGCCGTTCTCCGGCGGGGGCCACTTTTCGTTTGCC
GCTGAAACAGGGCATTTCTTCGCGCTGCACGAAGTACATGATGCTATTTT
TATCGACGAGTCTGCGCACAGTGGGCAAGGATATCGTTCAGATTACTATT
CTCAACAATATGGTACCGCTTCCACAACAGAAAGACAACAGCAGCAAGCA
AAGGACAGCTCGCGCGCGAATACGCAGTCGAACGCAGGTAGCACAGCCAA
TGAGAAACCCCCCGAGCCACCAAAGCATCAGACCGATCCAAACCCAGAGT
CGCGCATACACCGTGGCAAAGATGCCACATCGTCTCTGTCGGGGTCACTG
GATCTACAAGTTTATGAGGTTTACAACGCAGTCTCTTCGATGCTCAAAGG
TCTCGGAGACCAAGAAGCTCAGGAGACCAAGCTCAGATTGGAGGGTGTGC
GTGATGTAACCGGTCACCTTATCCGCGAAATGGAGCAACAAAAGAGTGAT
ATGTCTGATTTGGTTGCTGTTCTGCGCCATTTGAAGGAAACCGCCGGAGA
TTTATCGTACGCGGCTGATCGATTTTCGAGTCAATTGCAAGGTCTTCATA
ATTCGTTGCGCACGTTGCGGGAGAAAACGCATGGCATTTCTGACTCCCAT
GACGAGCTGCACGAGGAACTAATGGATCATCATGAAAGCATTACCGAACA
AAGTTCTGGCGGAAGTGGAACCCTGATTATGTTCCTGCTCATTCAGGGTT
TGTTGGGGGCCGGTGTGTACTATGTTAATAAGATGGCCCTGGCCGCGCGA
AAAGCGGGTCGCATGGTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:587700..589220-

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:587700..589220- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCTAAATTTCTTCCTGTGCTGCTCGCGTTTTGCATCCCTTTATG
CATGGCCCATGTCTCCCGGGAAGAGAGACGAAGAAAGCACCCTCAGCTGT
TCCAATTTCCATACCTTGGAGCCGGCGATCCAGACCATACCTTCCGTCAG
CCGTATGAGCCAAGTCCATACAGCGATCCTGTCAATGGATGGTTTCAATT
GGGTACCACCATCATCACTCGCAGTCGAACAGGCCGCGACGTAGTTCGTC
TCACCTCTGCGAGCCAGGCCAATCAGGGTGTTTTTTACAACGCCATCGTG
ACCGAATCCCAGAATTTCAATGGTTACTTTGACATTGAGATAGATACTGT
CCGAGACAGCCATGAACCGGCCGATGGTATGGGATTCTTTTTTACGCGCG
ACAGACCTACGGTTGGTTCAGCCATGGGAGTCGCACACACCTTTGTTGGT
TTGGGTATTATTATTGACACCTTTTCTAACTCACGCACTAGAAATGTGCC
CTACATGTATGCCTATGTGTCGGATGGCACAAAGGAGTGGAACCCCGATA
GCGACGGAGCTGATACTGAGCTCGCGAAAGGGTGTACCTTGGAAATGAAT
CATCAGGTTCGTGTGTATGTACAGTTTGTTGATGGGGATCTCCACGTGGG
TGTTGCCATGAACCCGCGTTTACCTAGTCGATGGCACACTTGTTTCAAGG
CATCTGGCGTACAATTGCCGTTCTCCGGCGGGGGCCACTTTTCGTTTGCC
GCTGAAACAGGGCATTTCTTCGCGCTGCACGAAGTACATGATGCTATTTT
TATCGACGAGTCTGCGCACAGTGGGCAAGGATATCGTTCAGATTACTATT
CTCAACAATATGGTACCGCTTCCACAACAGAAAGACAACAGCAGCAAGCA
AAGGACAGCTCGCGCGCGAATACGCAGTCGAACGCAGGTAGCACAGCCAA
TGAGAAACCCCCCGAGCCACCAAAGCATCAGACCGATCCAAACCCAGAGT
CGCGCATACACCGTGGCAAAGATGCCACATCGTCTCTGTCGGGGTCACTG
GATCTACAAGTTTATGAGGTTTACAACGCAGTCTCTTCGATGCTCAAAGG
TCTCGGAGACCAAGAAGCTCAGGAGACCAAGCTCAGATTGGAGGGTGTGC
GTGATGTAACCGGTCACCTTATCCGCGAAATGGAGCAACAAAAGAGTGAT
ATGTCTGATTTGGTTGCTGTTCTGCGCCATTTGAAGGAAACCGCCGGAGA
TTTATCGTACGCGGCTGATCGATTTTCGAGTCAATTGCAAGGTCTTCATA
ATTCGTTGCGCACGTTGCGGGAGAAAACGCATGGCATTTCTGACTCCCAT
GACGAGCTGCACGAGGAACTAATGGATCATCATGAAAGCATTACCGAACA
AAGTTCTGGCGGAAGTGGAACCCTGATTATGTTCCTGCTCATTCAGGGTT
TGTTGGGGGCCGGTGTGTACTATGTTAATAAGATGGCCCTGGCCGCGCGA
AAAGCGGGTCGCATGGTGTAG
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