Gvermi7995.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7995.t1
Unique Name	Gvermi7995.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:587700..589220 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6326.BUX.s00351.105
Preferred name	LMAN2
PFAMs	Lectin_leg-like
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10082,ko:K10083
KEGG Pathway	ko04141,map04141
GOs	GO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005537,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0005887,GO:0006457,GO:0006810,GO:0006888,GO:0006890,GO:0008104,GO:0008150,GO:0009986,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0030100,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030246,GO:0031072,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0033036,GO:0036094,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045807,GO:0046907,GO:0048029,GO:0048193,GO:0048471,GO:0048518,GO:0048522,GO:0050764,GO:0050766,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060627,GO:0065007,GO:0070382,GO:0071702,GO:0071705,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:0099503
Evalue	2.11e-19
EggNOG OGs	KOG3839@1\|root,KOG3839@2759\|Eukaryota,38FEY@33154\|Opisthokonta,3BHC9@33208\|Metazoa,3CYPI@33213\|Bilateria,40RB7@6231\|Nematoda,1KV2I@119089\|Chromadorea
Description	Legume-like lectin family
COG category	U
BRITE	ko00000,ko00001,ko04091,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7995	Gvermi7995	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 587700..589220 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7995.t1.stop1	Gvermi7995.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 587700..587702 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7995.t1.CDS1	Gvermi7995.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 587700..589220 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7995.t1.exon1	Gvermi7995.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 587700..589220 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7995.t1.start1	Gvermi7995.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 589218..589220 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7995.t1	Gvermi7995.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 587700..589220 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:587700..589220-
coding sequence from alignment at ScGOVlb_24226:587700..589220-

mRNA sequence

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MTPKFLPVLLAFCIPLCMAHVSREERRRKHPQLFQFPYLGAGDPDHTFRQ
PYEPSPYSDPVNGWFQLGTTIITRSRTGRDVVRLTSASQANQGVFYNAIV
TESQNFNGYFDIEIDTVRDSHEPADGMGFFFTRDRPTVGSAMGVAHTFVG
LGIIIDTFSNSRTRNVPYMYAYVSDGTKEWNPDSDGADTELAKGCTLEMN
HQVRVYVQFVDGDLHVGVAMNPRLPSRWHTCFKASGVQLPFSGGGHFSFA
AETGHFFALHEVHDAIFIDESAHSGQGYRSDYYSQQYGTASTTERQQQQA
KDSSRANTQSNAGSTANEKPPEPPKHQTDPNPESRIHRGKDATSSLSGSL
DLQVYEVYNAVSSMLKGLGDQEAQETKLRLEGVRDVTGHLIREMEQQKSD
MSDLVAVLRHLKETAGDLSYAADRFSSQLQGLHNSLRTLREKTHGISDSH
DELHEELMDHHESITEQSSGGSGTLIMFLLIQGLLGAGVYYVNKMALAAR
KAGRMV*

spliced messenger RNA

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:587700..589220- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCTAAATTTCTTCCTGTGCTGCTCGCGTTTTGCATCCCTTTATG
CATGGCCCATGTCTCCCGGGAAGAGAGACGAAGAAAGCACCCTCAGCTGT
TCCAATTTCCATACCTTGGAGCCGGCGATCCAGACCATACCTTCCGTCAG
CCGTATGAGCCAAGTCCATACAGCGATCCTGTCAATGGATGGTTTCAATT
GGGTACCACCATCATCACTCGCAGTCGAACAGGCCGCGACGTAGTTCGTC
TCACCTCTGCGAGCCAGGCCAATCAGGGTGTTTTTTACAACGCCATCGTG
ACCGAATCCCAGAATTTCAATGGTTACTTTGACATTGAGATAGATACTGT
CCGAGACAGCCATGAACCGGCCGATGGTATGGGATTCTTTTTTACGCGCG
ACAGACCTACGGTTGGTTCAGCCATGGGAGTCGCACACACCTTTGTTGGT
TTGGGTATTATTATTGACACCTTTTCTAACTCACGCACTAGAAATGTGCC
CTACATGTATGCCTATGTGTCGGATGGCACAAAGGAGTGGAACCCCGATA
GCGACGGAGCTGATACTGAGCTCGCGAAAGGGTGTACCTTGGAAATGAAT
CATCAGGTTCGTGTGTATGTACAGTTTGTTGATGGGGATCTCCACGTGGG
TGTTGCCATGAACCCGCGTTTACCTAGTCGATGGCACACTTGTTTCAAGG
CATCTGGCGTACAATTGCCGTTCTCCGGCGGGGGCCACTTTTCGTTTGCC
GCTGAAACAGGGCATTTCTTCGCGCTGCACGAAGTACATGATGCTATTTT
TATCGACGAGTCTGCGCACAGTGGGCAAGGATATCGTTCAGATTACTATT
CTCAACAATATGGTACCGCTTCCACAACAGAAAGACAACAGCAGCAAGCA
AAGGACAGCTCGCGCGCGAATACGCAGTCGAACGCAGGTAGCACAGCCAA
TGAGAAACCCCCCGAGCCACCAAAGCATCAGACCGATCCAAACCCAGAGT
CGCGCATACACCGTGGCAAAGATGCCACATCGTCTCTGTCGGGGTCACTG
GATCTACAAGTTTATGAGGTTTACAACGCAGTCTCTTCGATGCTCAAAGG
TCTCGGAGACCAAGAAGCTCAGGAGACCAAGCTCAGATTGGAGGGTGTGC
GTGATGTAACCGGTCACCTTATCCGCGAAATGGAGCAACAAAAGAGTGAT
ATGTCTGATTTGGTTGCTGTTCTGCGCCATTTGAAGGAAACCGCCGGAGA
TTTATCGTACGCGGCTGATCGATTTTCGAGTCAATTGCAAGGTCTTCATA
ATTCGTTGCGCACGTTGCGGGAGAAAACGCATGGCATTTCTGACTCCCAT
GACGAGCTGCACGAGGAACTAATGGATCATCATGAAAGCATTACCGAACA
AAGTTCTGGCGGAAGTGGAACCCTGATTATGTTCCTGCTCATTCAGGGTT
TGTTGGGGGCCGGTGTGTACTATGTTAATAAGATGGCCCTGGCCGCGCGA
AAAGCGGGTCGCATGGTGTAG

protein sequence of Gvermi7995.t1

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MTPKFLPVLLAFCIPLCMAHVSREERRRKHPQLFQFPYLGAGDPDHTFRQ
PYEPSPYSDPVNGWFQLGTTIITRSRTGRDVVRLTSASQANQGVFYNAIV
TESQNFNGYFDIEIDTVRDSHEPADGMGFFFTRDRPTVGSAMGVAHTFVG
LGIIIDTFSNSRTRNVPYMYAYVSDGTKEWNPDSDGADTELAKGCTLEMN
HQVRVYVQFVDGDLHVGVAMNPRLPSRWHTCFKASGVQLPFSGGGHFSFA
AETGHFFALHEVHDAIFIDESAHSGQGYRSDYYSQQYGTASTTERQQQQA
KDSSRANTQSNAGSTANEKPPEPPKHQTDPNPESRIHRGKDATSSLSGSL
DLQVYEVYNAVSSMLKGLGDQEAQETKLRLEGVRDVTGHLIREMEQQKSD
MSDLVAVLRHLKETAGDLSYAADRFSSQLQGLHNSLRTLREKTHGISDSH
DELHEELMDHHESITEQSSGGSGTLIMFLLIQGLLGAGVYYVNKMALAAR
KAGRMV*

mRNA from alignment at ScGOVlb_24226:587700..589220-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:587700..589220- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCTAAATTTCTTCCTGTGCTGCTCGCGTTTTGCATCCCTTTATG
CATGGCCCATGTCTCCCGGGAAGAGAGACGAAGAAAGCACCCTCAGCTGT
TCCAATTTCCATACCTTGGAGCCGGCGATCCAGACCATACCTTCCGTCAG
CCGTATGAGCCAAGTCCATACAGCGATCCTGTCAATGGATGGTTTCAATT
GGGTACCACCATCATCACTCGCAGTCGAACAGGCCGCGACGTAGTTCGTC
TCACCTCTGCGAGCCAGGCCAATCAGGGTGTTTTTTACAACGCCATCGTG
ACCGAATCCCAGAATTTCAATGGTTACTTTGACATTGAGATAGATACTGT
CCGAGACAGCCATGAACCGGCCGATGGTATGGGATTCTTTTTTACGCGCG
ACAGACCTACGGTTGGTTCAGCCATGGGAGTCGCACACACCTTTGTTGGT
TTGGGTATTATTATTGACACCTTTTCTAACTCACGCACTAGAAATGTGCC
CTACATGTATGCCTATGTGTCGGATGGCACAAAGGAGTGGAACCCCGATA
GCGACGGAGCTGATACTGAGCTCGCGAAAGGGTGTACCTTGGAAATGAAT
CATCAGGTTCGTGTGTATGTACAGTTTGTTGATGGGGATCTCCACGTGGG
TGTTGCCATGAACCCGCGTTTACCTAGTCGATGGCACACTTGTTTCAAGG
CATCTGGCGTACAATTGCCGTTCTCCGGCGGGGGCCACTTTTCGTTTGCC
GCTGAAACAGGGCATTTCTTCGCGCTGCACGAAGTACATGATGCTATTTT
TATCGACGAGTCTGCGCACAGTGGGCAAGGATATCGTTCAGATTACTATT
CTCAACAATATGGTACCGCTTCCACAACAGAAAGACAACAGCAGCAAGCA
AAGGACAGCTCGCGCGCGAATACGCAGTCGAACGCAGGTAGCACAGCCAA
TGAGAAACCCCCCGAGCCACCAAAGCATCAGACCGATCCAAACCCAGAGT
CGCGCATACACCGTGGCAAAGATGCCACATCGTCTCTGTCGGGGTCACTG
GATCTACAAGTTTATGAGGTTTACAACGCAGTCTCTTCGATGCTCAAAGG
TCTCGGAGACCAAGAAGCTCAGGAGACCAAGCTCAGATTGGAGGGTGTGC
GTGATGTAACCGGTCACCTTATCCGCGAAATGGAGCAACAAAAGAGTGAT
ATGTCTGATTTGGTTGCTGTTCTGCGCCATTTGAAGGAAACCGCCGGAGA
TTTATCGTACGCGGCTGATCGATTTTCGAGTCAATTGCAAGGTCTTCATA
ATTCGTTGCGCACGTTGCGGGAGAAAACGCATGGCATTTCTGACTCCCAT
GACGAGCTGCACGAGGAACTAATGGATCATCATGAAAGCATTACCGAACA
AAGTTCTGGCGGAAGTGGAACCCTGATTATGTTCCTGCTCATTCAGGGTT
TGTTGGGGGCCGGTGTGTACTATGTTAATAAGATGGCCCTGGCCGCGCGA
AAAGCGGGTCGCATGGTGTAG

Coding sequence (CDS) from alignment at ScGOVlb_24226:587700..589220-

>Gvermi7995.t1 ID=Gvermi7995.t1|Name=Gvermi7995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_24226:587700..589220- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCTAAATTTCTTCCTGTGCTGCTCGCGTTTTGCATCCCTTTATG
CATGGCCCATGTCTCCCGGGAAGAGAGACGAAGAAAGCACCCTCAGCTGT
TCCAATTTCCATACCTTGGAGCCGGCGATCCAGACCATACCTTCCGTCAG
CCGTATGAGCCAAGTCCATACAGCGATCCTGTCAATGGATGGTTTCAATT
GGGTACCACCATCATCACTCGCAGTCGAACAGGCCGCGACGTAGTTCGTC
TCACCTCTGCGAGCCAGGCCAATCAGGGTGTTTTTTACAACGCCATCGTG
ACCGAATCCCAGAATTTCAATGGTTACTTTGACATTGAGATAGATACTGT
CCGAGACAGCCATGAACCGGCCGATGGTATGGGATTCTTTTTTACGCGCG
ACAGACCTACGGTTGGTTCAGCCATGGGAGTCGCACACACCTTTGTTGGT
TTGGGTATTATTATTGACACCTTTTCTAACTCACGCACTAGAAATGTGCC
CTACATGTATGCCTATGTGTCGGATGGCACAAAGGAGTGGAACCCCGATA
GCGACGGAGCTGATACTGAGCTCGCGAAAGGGTGTACCTTGGAAATGAAT
CATCAGGTTCGTGTGTATGTACAGTTTGTTGATGGGGATCTCCACGTGGG
TGTTGCCATGAACCCGCGTTTACCTAGTCGATGGCACACTTGTTTCAAGG
CATCTGGCGTACAATTGCCGTTCTCCGGCGGGGGCCACTTTTCGTTTGCC
GCTGAAACAGGGCATTTCTTCGCGCTGCACGAAGTACATGATGCTATTTT
TATCGACGAGTCTGCGCACAGTGGGCAAGGATATCGTTCAGATTACTATT
CTCAACAATATGGTACCGCTTCCACAACAGAAAGACAACAGCAGCAAGCA
AAGGACAGCTCGCGCGCGAATACGCAGTCGAACGCAGGTAGCACAGCCAA
TGAGAAACCCCCCGAGCCACCAAAGCATCAGACCGATCCAAACCCAGAGT
CGCGCATACACCGTGGCAAAGATGCCACATCGTCTCTGTCGGGGTCACTG
GATCTACAAGTTTATGAGGTTTACAACGCAGTCTCTTCGATGCTCAAAGG
TCTCGGAGACCAAGAAGCTCAGGAGACCAAGCTCAGATTGGAGGGTGTGC
GTGATGTAACCGGTCACCTTATCCGCGAAATGGAGCAACAAAAGAGTGAT
ATGTCTGATTTGGTTGCTGTTCTGCGCCATTTGAAGGAAACCGCCGGAGA
TTTATCGTACGCGGCTGATCGATTTTCGAGTCAATTGCAAGGTCTTCATA
ATTCGTTGCGCACGTTGCGGGAGAAAACGCATGGCATTTCTGACTCCCAT
GACGAGCTGCACGAGGAACTAATGGATCATCATGAAAGCATTACCGAACA
AAGTTCTGGCGGAAGTGGAACCCTGATTATGTTCCTGCTCATTCAGGGTT
TGTTGGGGGCCGGTGTGTACTATGTTAATAAGATGGCCCTGGCCGCGCGA
AAAGCGGGTCGCATGGTGTAG