Gvermi7990.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7990.t1
Unique NameGvermi7990.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:534680..535352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_06218T0
PFAMsMMADHC
Max annot lvl4751|Fungi
Evalue1.91e-26
EggNOG OGsKOG3994@1|root,KOG3994@2759|Eukaryota,38PYD@33154|Opisthokonta,3P5YM@4751|Fungi,1GXG1@112252|Fungi incertae sedis
DescriptionMethylmalonic aciduria and homocystinuria type D protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7990Gvermi7990Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 534680..535352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7990.t1Gvermi7990.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 534680..535352 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7990.t1.stop1Gvermi7990.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 534680..534682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7990.t1.CDS1Gvermi7990.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 534680..534747 -
Gvermi7990.t1.CDS2Gvermi7990.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 534836..535352 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7990.t1.exon1Gvermi7990.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 534680..534747 -
Gvermi7990.t1.exon2Gvermi7990.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 534836..535352 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7990.t1.intron1Gvermi7990.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 534748..534835 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7990.t1.start1Gvermi7990.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 535350..535352 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7990.t1 ID=Gvermi7990.t1|Name=Gvermi7990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=195bp
MVPEDANQSVSQKRAQRIRAHTVVAPSMSERFDGLQYSAHTAGSLLRREL
HTIFPEAPRDAADLTVIVTMQRCDTPLMSFGAAQAAEKDRHLQRFFEWAR
AVRDALHAGHAERDERPWVEAADPASGLAAWGRGTGVYAEVDGAARLLGY
ATDAVGGCAVVRHPQWGLSVYLATMFTTARPDAVGSALQCVNHP*
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spliced messenger RNA

>Gvermi7990.t1 ID=Gvermi7990.t1|Name=Gvermi7990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=585bp|location=Sequence derived from alignment at ScGOVlb_24226:534680..535352- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCGGAGGACGCAAACCAATCCGTGTCGCAGAAGCGGGCGCAACG
CATCCGCGCGCACACCGTCGTGGCGCCGTCCATGTCGGAGCGCTTCGACG
GGCTGCAGTACTCGGCGCACACGGCGGGCAGCCTGCTGCGGCGCGAACTG
CACACTATCTTCCCAGAGGCGCCGCGCGACGCTGCCGACCTTACGGTGAT
CGTGACGATGCAACGCTGCGACACGCCGCTCATGTCGTTCGGCGCGGCGC
AGGCTGCAGAAAAGGACCGCCACTTGCAGCGCTTCTTTGAGTGGGCGCGA
GCCGTGCGCGACGCGCTGCACGCCGGCCACGCGGAGCGCGACGAGCGCCC
GTGGGTGGAGGCGGCTGATCCGGCCAGCGGGCTGGCGGCGTGGGGGCGTG
GCACCGGTGTGTACGCCGAGGTCGACGGCGCGGCGCGCCTGCTGGGCTAC
GCCACGGACGCCGTGGGTGGGTGCGCCGTGGTGCGCCATCCGCAGTGGGG
GCTCTCCGTGTATCTCGCGACCATGTTTACCACCGCGCGCCCCGACGCGG
TGGGAAGCGCGCTGCAGTGCGTCAATCACCCGTAG
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protein sequence of Gvermi7990.t1

>Gvermi7990.t1 ID=Gvermi7990.t1|Name=Gvermi7990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=195bp
MVPEDANQSVSQKRAQRIRAHTVVAPSMSERFDGLQYSAHTAGSLLRREL
HTIFPEAPRDAADLTVIVTMQRCDTPLMSFGAAQAAEKDRHLQRFFEWAR
AVRDALHAGHAERDERPWVEAADPASGLAAWGRGTGVYAEVDGAARLLGY
ATDAVGGCAVVRHPQWGLSVYLATMFTTARPDAVGSALQCVNHP*
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mRNA from alignment at ScGOVlb_24226:534680..535352-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7990.t1 ID=Gvermi7990.t1|Name=Gvermi7990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=673bp|location=Sequence derived from alignment at ScGOVlb_24226:534680..535352- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCCGGAGGACGCAAACCAATCCGTGTCGCAGAAGCGGGCGCAACG
CATCCGCGCGCACACCGTCGTGGCGCCGTCCATGTCGGAGCGCTTCGACG
GGCTGCAGTACTCGGCGCACACGGCGGGCAGCCTGCTGCGGCGCGAACTG
CACACTATCTTCCCAGAGGCGCCGCGCGACGCTGCCGACCTTACGGTGAT
CGTGACGATGCAACGCTGCGACACGCCGCTCATGTCGTTCGGCGCGGCGC
AGGCTGCAGAAAAGGACCGCCACTTGCAGCGCTTCTTTGAGTGGGCGCGA
GCCGTGCGCGACGCGCTGCACGCCGGCCACGCGGAGCGCGACGAGCGCCC
GTGGGTGGAGGCGGCTGATCCGGCCAGCGGGCTGGCGGCGTGGGGGCGTG
GCACCGGTGTGTACGCCGAGGTCGACGGCGCGGCGCGCCTGCTGGGCTAC
GCCACGGACGCCGTGGGTGGGTGCGCCGTGGTGCGCCATCCGCAGTGGGG
GCTCTCCGTGTATCTCGGTACGTCTCCAGTCTCCATCGCCGCGAAGATGC
GCCTGTCGAAGCTGACCGCCCGCTGTTCGCCACCGCCACCGCCACGCGCT
CGCAGCGACCATGTTTACCACCGCGCGCCCCGACGCGGTGGGAAGCGCGC
TGCAGTGCGTCAATCACCCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:534680..535352-

>Gvermi7990.t1 ID=Gvermi7990.t1|Name=Gvermi7990.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=585bp|location=Sequence derived from alignment at ScGOVlb_24226:534680..535352- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCCGGAGGACGCAAACCAATCCGTGTCGCAGAAGCGGGCGCAACG
CATCCGCGCGCACACCGTCGTGGCGCCGTCCATGTCGGAGCGCTTCGACG
GGCTGCAGTACTCGGCGCACACGGCGGGCAGCCTGCTGCGGCGCGAACTG
CACACTATCTTCCCAGAGGCGCCGCGCGACGCTGCCGACCTTACGGTGAT
CGTGACGATGCAACGCTGCGACACGCCGCTCATGTCGTTCGGCGCGGCGC
AGGCTGCAGAAAAGGACCGCCACTTGCAGCGCTTCTTTGAGTGGGCGCGA
GCCGTGCGCGACGCGCTGCACGCCGGCCACGCGGAGCGCGACGAGCGCCC
GTGGGTGGAGGCGGCTGATCCGGCCAGCGGGCTGGCGGCGTGGGGGCGTG
GCACCGGTGTGTACGCCGAGGTCGACGGCGCGGCGCGCCTGCTGGGCTAC
GCCACGGACGCCGTGGGTGGGTGCGCCGTGGTGCGCCATCCGCAGTGGGG
GCTCTCCGTGTATCTCGCGACCATGTTTACCACCGCGCGCCCCGACGCGG
TGGGAAGCGCGCTGCAGTGCGTCAATCACCCGTAG
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