Gvermi7947.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7947.t1
Unique NameGvermi7947.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:279325..281426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002736435.2
Preferred nameH3F3C
PFAMsHistone
Max annot lvl33208|Metazoa
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Evalue1.44e-27
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota,39ZTV@33154|Opisthokonta,3BPDH@33208|Metazoa,3D6BK@33213|Bilateria
Descriptionnucleosomal DNA binding
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7947Gvermi7947Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 279325..281426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7947.t1Gvermi7947.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 279325..281426 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7947.t1.stop1Gvermi7947.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 279325..279327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7947.t1.CDS1Gvermi7947.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 279325..279617 -
Gvermi7947.t1.CDS2Gvermi7947.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 279744..280081 -
Gvermi7947.t1.CDS3Gvermi7947.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 281130..281320 -
Gvermi7947.t1.CDS4Gvermi7947.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 281424..281426 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7947.t1.exon1Gvermi7947.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 279325..279617 -
Gvermi7947.t1.exon2Gvermi7947.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 279744..280081 -
Gvermi7947.t1.exon3Gvermi7947.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 281130..281320 -
Gvermi7947.t1.exon4Gvermi7947.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 281424..281426 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7947.t1.intron1Gvermi7947.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 279618..279743 -
Gvermi7947.t1.intron2Gvermi7947.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 280082..281129 -
Gvermi7947.t1.intron3Gvermi7947.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 281321..281423 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7947.t1.start1Gvermi7947.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 281424..281426 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7947.t1 ID=Gvermi7947.t1|Name=Gvermi7947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=275bp
MDQPVKIAKVSKIIGRTGSRGGITQVRVEFLDDQNRSIIRNVKGPVREGD
LLALLESEREARRFSYEEADILNDLPTSSSNILPKRPGRGAQKHSTISGP
SLAIVVPRWWSQQHFDFGSLYPIRIRWSRIVSCARPVHNPQQLSQNWRSQ
TSASDPSAQIARAKPQAMENTLKGRSAAPAPSTAGRAGMKKPNRTRPGTV
ALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESS
EAYLTGLFEDANLCAIHGLREEYP*
back to top

spliced messenger RNA

>Gvermi7947.t1 ID=Gvermi7947.t1|Name=Gvermi7947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=825bp|location=Sequence derived from alignment at ScGOVlb_24226:279325..281426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAGCCCGTGAAGATTGCGAAGGTTTCCAAGATCATCGGCCGCAC
TGGGTCTCGCGGCGGCATCACCCAGGTCCGCGTCGAGTTCCTCGACGACC
AAAATCGCTCCATCATCCGCAACGTCAAGGGCCCGGTTCGCGAGGGAGAC
CTCCTGGCGCTGCTAGAGTCCGAGCGAGAGGCGCGCCGCTTCAGTTATGA
AGAAGCGGATATTTTGAACGATTTGCCGACGTCCAGCTCCAATATCTTGC
CGAAACGTCCCGGTCGAGGGGCTCAGAAGCATTCCACCATCTCGGGGCCG
TCCTTAGCTATTGTTGTCCCGAGATGGTGGAGTCAACAACACTTTGACTT
CGGGTCATTGTATCCAATAAGAATACGATGGTCAAGAATAGTCTCATGTG
CTCGCCCTGTCCACAATCCTCAGCAGCTCAGCCAAAACTGGCGTTCCCAA
ACAAGCGCGTCAGACCCCTCAGCACAGATCGCCAGAGCGAAGCCGCAAGC
AATGGAAAATACCCTGAAAGGAAGATCCGCAGCCCCAGCCCCATCCACGG
CTGGCAGGGCTGGCATGAAAAAGCCGAACCGCACCCGCCCGGGCACGGTG
GCCCTTCGTGAAATCCAAAAGTATCAAAACAACACGGCTCTGCTCGTTCC
AAAGCTTCTGTTGCAGCGCTTGACTCGAGAAATCGCGCAAGACTTTCGGG
AGGAGTTGGGGTTTCGTGAAGCTGCCGTGAGGGCTTTGCAGGAATCCTCC
GAGGCATACCTGACCGGGCTGTTTGAAGATGCGAATTTGTGCGCGATTCA
TGGCCTACGCGAAGAATACCCGTAA
back to top

protein sequence of Gvermi7947.t1

>Gvermi7947.t1 ID=Gvermi7947.t1|Name=Gvermi7947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=275bp
MDQPVKIAKVSKIIGRTGSRGGITQVRVEFLDDQNRSIIRNVKGPVREGD
LLALLESEREARRFSYEEADILNDLPTSSSNILPKRPGRGAQKHSTISGP
SLAIVVPRWWSQQHFDFGSLYPIRIRWSRIVSCARPVHNPQQLSQNWRSQ
TSASDPSAQIARAKPQAMENTLKGRSAAPAPSTAGRAGMKKPNRTRPGTV
ALREIQKYQNNTALLVPKLLLQRLTREIAQDFREELGFREAAVRALQESS
EAYLTGLFEDANLCAIHGLREEYP*
back to top

mRNA from alignment at ScGOVlb_24226:279325..281426-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7947.t1 ID=Gvermi7947.t1|Name=Gvermi7947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2102bp|location=Sequence derived from alignment at ScGOVlb_24226:279325..281426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAGTTCAGTCCAAACTTGAGGCCCGCAAGTCCCATATCTATGCAG
GACTTCTAGCCCGTGCACCGCAGTCGCTAACCAAATCGCTCCTCAAACCA
CCACAGGATCAGCCCGTGAAGATTGCGAAGGTTTCCAAGATCATCGGCCG
CACTGGGTCTCGCGGCGGCATCACCCAGGTCCGCGTCGAGTTCCTCGACG
ACCAAAATCGCTCCATCATCCGCAACGTCAAGGGCCCGGTTCGCGAGGGA
GACCTCCTGGCGCTGCTAGAGTCCGAGCGAGAGGCGCGCCGCTTCAGGTA
ATGCCGTGCCTGCCTGCACATGGCAGCTGCGCTTTCGCCGGTTGGTTATG
CCTTCGTGGAGGTCCTGGGCGCCCCGTTTCCTTGCCGTGCACGCCGCTAT
CCGATGACGGCCGCTGACGCCGTTCTTGTCTTGTCACCCTTCACAACTCG
TTGCGATTGCCGAACCTCGCGGCCGCTCGGGATGCGTCGGTATGTCGAGC
AGCTTCAGTATATGCCGTAAATATGTGCCTGTGAAATGCGTCACCAGTCT
TTTGGGTGCCAGAAGCATACGTCTGTATTTAGAGGAGCGTTTCTTACTTA
GGATACCATGCAATCCCCTCCAGCTCCCCGCTCTCTGAACGCTTTCGCTC
CATACTTGATTTGATCCTTTACGCAGCAAAAGTATGGGCGATCCGAGGTC
TGCAAAGTCCCGATGCGTTCCCACGTTGCGTCTCATATCTCCCTGATACT
CTTCAATACATTGTATCGCACGCGTCGCGGGTGCGATTTCCGCCCTGCCC
CAGCTCAGACCACTATGCAGCCCAAAGTGATTTTCCACGAGTACCTCGCA
CACAGTGAAAGTATTGCACCGCAAATACTGTCGTTAGCGCTCTATTCGAT
GACCCAACAAAACTGTATATTCTGTCCCGCCGCCTTTACCTTTTGTTGAC
AAGTACCTGTCGCGCAAGCCAGCAATGCCTGACCGGACGCTTGCAAATAT
GTTGCTGCTCGACACTGAGAGGACGGTGACGATAATGGAGAGCTGATTTT
GATGTTTGCCCGGCATGAAACAAGGACAAGTGAGTTCTCTTTACATAAGT
AGAGCTTGTGTGCGTGCCGCGATCCGTTACTGAAAAAAGCCATCCTGGTG
TTCACCATCTAGGAAACCATGCTTGCAACCTCCTCCCCGTCCTTCACGCT
CATGTACACTTGTGCTTGTCAGTTTTGTTTGTAGGTGAACGTGATGCCCT
GTTATAGACAGCGTAAGATGAAAGGGCGGGCCGTTGCTGTAGATGAGTCT
TTGTCTCCGCTTATTCAGTCCAGTGCGTTGTCCTCAACACGTAAGTTATG
AAGAAGCGGATATTTTGAACGATTTGCCGACGTCCAGCTCCAATATCTTG
CCGAAACGTCCCGGTCGAGGGGCTCAGAAGCATTCCACCATCTCGGGGCC
GTCCTTAGCTATTGTTGTCCCGAGATGGTGGAGTCAACAACACTTTGACT
TCGGGTCATTGTATCCAATAAGAATACGATGGTCAAGAATAGTCTCATGT
GCTCGCCCTGTCCACAATCCTCAGCAGCTCAGCCAAAACTGGCGTTCCCA
AACAAGCGCGTCAGACCCCTCAGCACAGATCGCCAGAGCGAAGCCGCAAG
CAATGGAAAATACCCTGAAAGGAAGATCCGCAGGTGTCCTCATGTGTGCA
GAGCACTCGCACATCATCCACAACGCCGTCATCGCGACTAGCATGCACTA
CGAGCTCTCTCTCAAAACCCAACCGCTTCCTCACGCTGACATGACGCCCA
TCCCATAAGCCCCAGCCCCATCCACGGCTGGCAGGGCTGGCATGAAAAAG
CCGAACCGCACCCGCCCGGGCACGGTGGCCCTTCGTGAAATCCAAAAGTA
TCAAAACAACACGGCTCTGCTCGTTCCAAAGCTTCTGTTGCAGCGCTTGA
CTCGAGAAATCGCGCAAGACTTTCGGGAGGAGTTGGGGTTTCGTGAAGCT
GCCGTGAGGGCTTTGCAGGAATCCTCCGAGGCATACCTGACCGGGCTGTT
TGAAGATGCGAATTTGTGCGCGATTCATGGCCTACGCGAAGAATACCCGT
AA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:279325..281426-

>Gvermi7947.t1 ID=Gvermi7947.t1|Name=Gvermi7947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=825bp|location=Sequence derived from alignment at ScGOVlb_24226:279325..281426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCAGCCCGTGAAGATTGCGAAGGTTTCCAAGATCATCGGCCGCAC
TGGGTCTCGCGGCGGCATCACCCAGGTCCGCGTCGAGTTCCTCGACGACC
AAAATCGCTCCATCATCCGCAACGTCAAGGGCCCGGTTCGCGAGGGAGAC
CTCCTGGCGCTGCTAGAGTCCGAGCGAGAGGCGCGCCGCTTCAGTTATGA
AGAAGCGGATATTTTGAACGATTTGCCGACGTCCAGCTCCAATATCTTGC
CGAAACGTCCCGGTCGAGGGGCTCAGAAGCATTCCACCATCTCGGGGCCG
TCCTTAGCTATTGTTGTCCCGAGATGGTGGAGTCAACAACACTTTGACTT
CGGGTCATTGTATCCAATAAGAATACGATGGTCAAGAATAGTCTCATGTG
CTCGCCCTGTCCACAATCCTCAGCAGCTCAGCCAAAACTGGCGTTCCCAA
ACAAGCGCGTCAGACCCCTCAGCACAGATCGCCAGAGCGAAGCCGCAAGC
AATGGAAAATACCCTGAAAGGAAGATCCGCAGCCCCAGCCCCATCCACGG
CTGGCAGGGCTGGCATGAAAAAGCCGAACCGCACCCGCCCGGGCACGGTG
GCCCTTCGTGAAATCCAAAAGTATCAAAACAACACGGCTCTGCTCGTTCC
AAAGCTTCTGTTGCAGCGCTTGACTCGAGAAATCGCGCAAGACTTTCGGG
AGGAGTTGGGGTTTCGTGAAGCTGCCGTGAGGGCTTTGCAGGAATCCTCC
GAGGCATACCTGACCGGGCTGTTTGAAGATGCGAATTTGTGCGCGATTCA
TGGCCTACGCGAAGAATACCCGTAA
back to top