Gvermi6971.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6971.t1
Unique Name	Gvermi6971.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:782835..783812 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	296587.XP_002506390.1
Max annot lvl	3041\|Chlorophyta
Evalue	1.21e-15
EggNOG OGs	28IFV@1\|root,2QWFT@2759\|Eukaryota,37RGS@33090\|Viridiplantae,34KGI@3041\|Chlorophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6971	Gvermi6971	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 782835..783812 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6971.t1.start1	Gvermi6971.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 782835..782837 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6971.t1.CDS1	Gvermi6971.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 782835..783812 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6971.t1.exon1	Gvermi6971.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 782835..783812 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6971.t1.stop1	Gvermi6971.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 783810..783812 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6971.t1	Gvermi6971.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 782835..783812 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:782835..783812+
coding sequence from alignment at ScGOVlb_24229:782835..783812+

mRNA sequence

>Gvermi6971.t1 ID=Gvermi6971.t1|Name=Gvermi6971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=326bp
MVATSAAGHGSQWCMTTVTPGFAQPLRVSRVLPSQKGLFSGVCVLKQNTY
QASDLRRLKPKIIAASQLDKVDAEKTTPQLPSKSVSIKIERFITGAAYAG
FVLFALFLAPGSLSNTGEIGRIVGGKLDDVNELFFALFCLMGTLSINMAV
LLNPGAGAQKRLSTGWFSFAGVFLGFGALGPYLIGREYAPSVYSQDISKR
GLFGRLVESKGFSVGTLLFTLWTYAFALGAFTPGTTEIHDAVLYASFKSL
GRLLLTDRFVCVTTLDGLLLSVLTWGPLTEDMRRRGWFVSGKKLESILTA
LSILSTPGVGVALYLILRPRLPRKK*

spliced messenger RNA

>Gvermi6971.t1 ID=Gvermi6971.t1|Name=Gvermi6971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=978bp|location=Sequence derived from alignment at ScGOVlb_24229:782835..783812+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGCAACTTCGGCAGCAGGACATGGGAGTCAATGGTGTATGACGAC
CGTCACCCCTGGTTTCGCACAGCCGTTGCGTGTTAGTAGAGTGCTTCCAT
CACAGAAAGGGCTCTTCTCTGGCGTTTGTGTTTTAAAACAAAATACGTAT
CAAGCTTCGGATTTGAGAAGGCTGAAGCCCAAGATAATTGCAGCTTCGCA
GTTGGACAAAGTCGACGCGGAGAAAACAACTCCACAGCTGCCATCTAAAA
GTGTTTCCATTAAGATTGAACGTTTTATCACAGGGGCCGCTTACGCCGGT
TTCGTTTTGTTTGCACTGTTTCTCGCTCCTGGATCGTTGTCCAACACGGG
AGAAATTGGCCGCATAGTCGGTGGTAAGCTAGATGACGTGAATGAGCTGT
TCTTCGCCTTATTCTGCTTAATGGGAACTTTATCCATCAACATGGCTGTT
TTGTTGAACCCGGGGGCAGGTGCCCAGAAACGGCTCTCGACGGGATGGTT
CTCGTTTGCAGGAGTTTTTTTGGGGTTTGGAGCACTCGGTCCATACCTCA
TTGGTCGGGAGTACGCGCCTTCTGTTTACTCCCAGGACATTTCCAAAAGA
GGCCTTTTTGGAAGACTTGTCGAGTCGAAAGGGTTTTCGGTTGGAACTCT
GCTTTTCACGTTGTGGACTTACGCTTTCGCGCTCGGCGCTTTTACCCCTG
GAACAACTGAAATTCATGACGCCGTATTGTACGCTTCCTTCAAAAGTCTG
GGTCGCCTTCTCTTGACGGATCGCTTTGTATGTGTCACAACGCTTGATGG
GCTACTCCTTAGTGTGTTAACATGGGGGCCACTCACAGAAGATATGCGGC
GACGAGGATGGTTTGTATCTGGGAAGAAGCTGGAATCAATCCTAACGGCG
CTGTCAATTTTATCGACCCCTGGTGTGGGTGTAGCTCTTTATCTCATACT
AAGACCGCGTCTACCGAGAAAAAAATGA

protein sequence of Gvermi6971.t1

>Gvermi6971.t1 ID=Gvermi6971.t1|Name=Gvermi6971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=326bp
MVATSAAGHGSQWCMTTVTPGFAQPLRVSRVLPSQKGLFSGVCVLKQNTY
QASDLRRLKPKIIAASQLDKVDAEKTTPQLPSKSVSIKIERFITGAAYAG
FVLFALFLAPGSLSNTGEIGRIVGGKLDDVNELFFALFCLMGTLSINMAV
LLNPGAGAQKRLSTGWFSFAGVFLGFGALGPYLIGREYAPSVYSQDISKR
GLFGRLVESKGFSVGTLLFTLWTYAFALGAFTPGTTEIHDAVLYASFKSL
GRLLLTDRFVCVTTLDGLLLSVLTWGPLTEDMRRRGWFVSGKKLESILTA
LSILSTPGVGVALYLILRPRLPRKK*

mRNA from alignment at ScGOVlb_24229:782835..783812+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6971.t1 ID=Gvermi6971.t1|Name=Gvermi6971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=978bp|location=Sequence derived from alignment at ScGOVlb_24229:782835..783812+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAGCAACTTCGGCAGCAGGACATGGGAGTCAATGGTGTATGACGAC
CGTCACCCCTGGTTTCGCACAGCCGTTGCGTGTTAGTAGAGTGCTTCCAT
CACAGAAAGGGCTCTTCTCTGGCGTTTGTGTTTTAAAACAAAATACGTAT
CAAGCTTCGGATTTGAGAAGGCTGAAGCCCAAGATAATTGCAGCTTCGCA
GTTGGACAAAGTCGACGCGGAGAAAACAACTCCACAGCTGCCATCTAAAA
GTGTTTCCATTAAGATTGAACGTTTTATCACAGGGGCCGCTTACGCCGGT
TTCGTTTTGTTTGCACTGTTTCTCGCTCCTGGATCGTTGTCCAACACGGG
AGAAATTGGCCGCATAGTCGGTGGTAAGCTAGATGACGTGAATGAGCTGT
TCTTCGCCTTATTCTGCTTAATGGGAACTTTATCCATCAACATGGCTGTT
TTGTTGAACCCGGGGGCAGGTGCCCAGAAACGGCTCTCGACGGGATGGTT
CTCGTTTGCAGGAGTTTTTTTGGGGTTTGGAGCACTCGGTCCATACCTCA
TTGGTCGGGAGTACGCGCCTTCTGTTTACTCCCAGGACATTTCCAAAAGA
GGCCTTTTTGGAAGACTTGTCGAGTCGAAAGGGTTTTCGGTTGGAACTCT
GCTTTTCACGTTGTGGACTTACGCTTTCGCGCTCGGCGCTTTTACCCCTG
GAACAACTGAAATTCATGACGCCGTATTGTACGCTTCCTTCAAAAGTCTG
GGTCGCCTTCTCTTGACGGATCGCTTTGTATGTGTCACAACGCTTGATGG
GCTACTCCTTAGTGTGTTAACATGGGGGCCACTCACAGAAGATATGCGGC
GACGAGGATGGTTTGTATCTGGGAAGAAGCTGGAATCAATCCTAACGGCG
CTGTCAATTTTATCGACCCCTGGTGTGGGTGTAGCTCTTTATCTCATACT
AAGACCGCGTCTACCGAGAAAAAAATGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:782835..783812+

>Gvermi6971.t1 ID=Gvermi6971.t1|Name=Gvermi6971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=978bp|location=Sequence derived from alignment at ScGOVlb_24229:782835..783812+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAGCAACTTCGGCAGCAGGACATGGGAGTCAATGGTGTATGACGAC
CGTCACCCCTGGTTTCGCACAGCCGTTGCGTGTTAGTAGAGTGCTTCCAT
CACAGAAAGGGCTCTTCTCTGGCGTTTGTGTTTTAAAACAAAATACGTAT
CAAGCTTCGGATTTGAGAAGGCTGAAGCCCAAGATAATTGCAGCTTCGCA
GTTGGACAAAGTCGACGCGGAGAAAACAACTCCACAGCTGCCATCTAAAA
GTGTTTCCATTAAGATTGAACGTTTTATCACAGGGGCCGCTTACGCCGGT
TTCGTTTTGTTTGCACTGTTTCTCGCTCCTGGATCGTTGTCCAACACGGG
AGAAATTGGCCGCATAGTCGGTGGTAAGCTAGATGACGTGAATGAGCTGT
TCTTCGCCTTATTCTGCTTAATGGGAACTTTATCCATCAACATGGCTGTT
TTGTTGAACCCGGGGGCAGGTGCCCAGAAACGGCTCTCGACGGGATGGTT
CTCGTTTGCAGGAGTTTTTTTGGGGTTTGGAGCACTCGGTCCATACCTCA
TTGGTCGGGAGTACGCGCCTTCTGTTTACTCCCAGGACATTTCCAAAAGA
GGCCTTTTTGGAAGACTTGTCGAGTCGAAAGGGTTTTCGGTTGGAACTCT
GCTTTTCACGTTGTGGACTTACGCTTTCGCGCTCGGCGCTTTTACCCCTG
GAACAACTGAAATTCATGACGCCGTATTGTACGCTTCCTTCAAAAGTCTG
GGTCGCCTTCTCTTGACGGATCGCTTTGTATGTGTCACAACGCTTGATGG
GCTACTCCTTAGTGTGTTAACATGGGGGCCACTCACAGAAGATATGCGGC
GACGAGGATGGTTTGTATCTGGGAAGAAGCTGGAATCAATCCTAACGGCG
CTGTCAATTTTATCGACCCCTGGTGTGGGTGTAGCTCTTTATCTCATACT
AAGACCGCGTCTACCGAGAAAAAAATGA