Gvermi6960.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6960.t1
Unique Name	Gvermi6960.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	330

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:752514..753503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173264.KI913949_gene4270
PFAMs	DUF3611
Max annot lvl	1117\|Cyanobacteria
Evalue	2.62e-10
EggNOG OGs	COG3038@1\|root,COG3038@2\|Bacteria,1G6R0@1117\|Cyanobacteria,1HBY9@1150\|Oscillatoriales
Description	Protein of unknown function (DUF3611)
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6960	Gvermi6960	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 752514..753503 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6960.t1.start1	Gvermi6960.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 752514..752516 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6960.t1.CDS1	Gvermi6960.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 752514..753503 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6960.t1.exon1	Gvermi6960.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 752514..753503 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6960.t1.stop1	Gvermi6960.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 753501..753503 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6960.t1	Gvermi6960.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 752514..753503 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:752514..753503+
coding sequence from alignment at ScGOVlb_24229:752514..753503+

mRNA sequence

>Gvermi6960.t1 ID=Gvermi6960.t1|Name=Gvermi6960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=330bp
MENVYVAFVGNVVPKFLGNPECITRFKRSDASRVQIVQPRTRYFRSRARF
YGKLGSTGNHESDRNENENESAESEGRESVENPGQLFSKLEDARKKRKEV
STEGRGVDTKLSNGMNNALNTNNAEVYALETIPEGLQSASRALWRVGWVV
WWLQLILTVIAAVILLFTFLFPGINVRTAASAVGFAVSGAGIVFAFLSLF
WTYGYTRLALWLREKQTLEKAQLRIHRRLRFGLLFSITGIVILLVGLQAI
VGTLLARLLGTGIASPNASQNLASGVMVSNPGLVQPVDILVVQACANGLT
GMMIALVATVWFRAKEKKWISKSAVSKES*

spliced messenger RNA

>Gvermi6960.t1 ID=Gvermi6960.t1|Name=Gvermi6960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:752514..753503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAACGTCTACGTCGCGTTCGTTGGAAATGTGGTTCCTAAATTTCT
TGGTAACCCCGAATGTATCACGAGATTTAAACGGTCTGATGCTTCAAGAG
TGCAAATAGTTCAACCTCGGACGAGGTATTTTCGAAGTAGAGCGCGTTTC
TACGGAAAATTAGGTTCTACAGGCAACCATGAGTCCGACAGaaacgaaaa
tgaaaacgaaagcgcagaaagcgaaGGAAGAGAGTCCGTTGAGAATCCAG
GTCAGTTGTTTTCAAAACTTGAAGACGCTAGAAAGAAAAGGAAAGAGGTC
TCAACTGAAGGGAGAGGTGTCGACACAAAGCTCAGTAATGGGATGAATAA
TGCACTTAATACCAACAATGCGGAAGTGTACGCTCTGGAAACGATTCCCG
AAGGTCTACAATCTGCTTCTCGAGCACTATGGCGTGTTGGCTGGGTCGTT
TGGTGGTTACAGCTTATTCTTACCGTCATTGCTGCAGTCATCCTCTTGTT
TACATTTCTGTTCCCAGGGATAAATGTCCGTACCGCTGCGTCTGCTGTGG
GTTTCGCAGTTTCTGGAGCTGGGATCGTGTTTGCATTCTTGAGCCTCTTT
TGGACTTATGGATATACACGATTAGCCCTTTGGTTGCGAGAAAAGCAAAC
GCTTGAGAAAGCCCAGTTGCGAATACACCGTAGACTCAGGTTCGGACTCT
TGTTTTCAATCACGGGTATAGTTATCCTTCTGGTAGGGCTTCAGGCAATC
GTTGGCACACTTTTAGCGAGACTGTTAGGAACCGGAATTGCGTCTCCAAA
CGCGTCACAAAATCTCGCCAGTGGAGTTATGGTTTCAAACCCAGGGCTTG
TGCAACCCGTGGACATACTTGTAGTTCAAGCATGCGCAAACGGCTTGACT
GGGATGATGATAGCCCTTGTGGCAACCGTATGGTTCCGAGCAAAGGAAAA
AAAGTGGATATCAAAGTCTGCAGTTTCAAAAGAGTCGTAG

protein sequence of Gvermi6960.t1

>Gvermi6960.t1 ID=Gvermi6960.t1|Name=Gvermi6960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=330bp
MENVYVAFVGNVVPKFLGNPECITRFKRSDASRVQIVQPRTRYFRSRARF
YGKLGSTGNHESDRNENENESAESEGRESVENPGQLFSKLEDARKKRKEV
STEGRGVDTKLSNGMNNALNTNNAEVYALETIPEGLQSASRALWRVGWVV
WWLQLILTVIAAVILLFTFLFPGINVRTAASAVGFAVSGAGIVFAFLSLF
WTYGYTRLALWLREKQTLEKAQLRIHRRLRFGLLFSITGIVILLVGLQAI
VGTLLARLLGTGIASPNASQNLASGVMVSNPGLVQPVDILVVQACANGLT
GMMIALVATVWFRAKEKKWISKSAVSKES*

mRNA from alignment at ScGOVlb_24229:752514..753503+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6960.t1 ID=Gvermi6960.t1|Name=Gvermi6960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:752514..753503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAACGTCTACGTCGCGTTCGTTGGAAATGTGGTTCCTAAATTTCT
TGGTAACCCCGAATGTATCACGAGATTTAAACGGTCTGATGCTTCAAGAG
TGCAAATAGTTCAACCTCGGACGAGGTATTTTCGAAGTAGAGCGCGTTTC
TACGGAAAATTAGGTTCTACAGGCAACCATGAGTCCGACAGaaacgaaaa
tgaaaacgaaagcgcagaaagcgaaGGAAGAGAGTCCGTTGAGAATCCAG
GTCAGTTGTTTTCAAAACTTGAAGACGCTAGAAAGAAAAGGAAAGAGGTC
TCAACTGAAGGGAGAGGTGTCGACACAAAGCTCAGTAATGGGATGAATAA
TGCACTTAATACCAACAATGCGGAAGTGTACGCTCTGGAAACGATTCCCG
AAGGTCTACAATCTGCTTCTCGAGCACTATGGCGTGTTGGCTGGGTCGTT
TGGTGGTTACAGCTTATTCTTACCGTCATTGCTGCAGTCATCCTCTTGTT
TACATTTCTGTTCCCAGGGATAAATGTCCGTACCGCTGCGTCTGCTGTGG
GTTTCGCAGTTTCTGGAGCTGGGATCGTGTTTGCATTCTTGAGCCTCTTT
TGGACTTATGGATATACACGATTAGCCCTTTGGTTGCGAGAAAAGCAAAC
GCTTGAGAAAGCCCAGTTGCGAATACACCGTAGACTCAGGTTCGGACTCT
TGTTTTCAATCACGGGTATAGTTATCCTTCTGGTAGGGCTTCAGGCAATC
GTTGGCACACTTTTAGCGAGACTGTTAGGAACCGGAATTGCGTCTCCAAA
CGCGTCACAAAATCTCGCCAGTGGAGTTATGGTTTCAAACCCAGGGCTTG
TGCAACCCGTGGACATACTTGTAGTTCAAGCATGCGCAAACGGCTTGACT
GGGATGATGATAGCCCTTGTGGCAACCGTATGGTTCCGAGCAAAGGAAAA
AAAGTGGATATCAAAGTCTGCAGTTTCAAAAGAGTCGTAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:752514..753503+

>Gvermi6960.t1 ID=Gvermi6960.t1|Name=Gvermi6960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=990bp|location=Sequence derived from alignment at ScGOVlb_24229:752514..753503+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAACGTCTACGTCGCGTTCGTTGGAAATGTGGTTCCTAAATTTCT
TGGTAACCCCGAATGTATCACGAGATTTAAACGGTCTGATGCTTCAAGAG
TGCAAATAGTTCAACCTCGGACGAGGTATTTTCGAAGTAGAGCGCGTTTC
TACGGAAAATTAGGTTCTACAGGCAACCATGAGTCCGACAGaaacgaaaa
tgaaaacgaaagcgcagaaagcgaaGGAAGAGAGTCCGTTGAGAATCCAG
GTCAGTTGTTTTCAAAACTTGAAGACGCTAGAAAGAAAAGGAAAGAGGTC
TCAACTGAAGGGAGAGGTGTCGACACAAAGCTCAGTAATGGGATGAATAA
TGCACTTAATACCAACAATGCGGAAGTGTACGCTCTGGAAACGATTCCCG
AAGGTCTACAATCTGCTTCTCGAGCACTATGGCGTGTTGGCTGGGTCGTT
TGGTGGTTACAGCTTATTCTTACCGTCATTGCTGCAGTCATCCTCTTGTT
TACATTTCTGTTCCCAGGGATAAATGTCCGTACCGCTGCGTCTGCTGTGG
GTTTCGCAGTTTCTGGAGCTGGGATCGTGTTTGCATTCTTGAGCCTCTTT
TGGACTTATGGATATACACGATTAGCCCTTTGGTTGCGAGAAAAGCAAAC
GCTTGAGAAAGCCCAGTTGCGAATACACCGTAGACTCAGGTTCGGACTCT
TGTTTTCAATCACGGGTATAGTTATCCTTCTGGTAGGGCTTCAGGCAATC
GTTGGCACACTTTTAGCGAGACTGTTAGGAACCGGAATTGCGTCTCCAAA
CGCGTCACAAAATCTCGCCAGTGGAGTTATGGTTTCAAACCCAGGGCTTG
TGCAACCCGTGGACATACTTGTAGTTCAAGCATGCGCAAACGGCTTGACT
GGGATGATGATAGCCCTTGTGGCAACCGTATGGTTCCGAGCAAAGGAAAA
AAAGTGGATATCAAAGTCTGCAGTTTCAAAAGAGTCGTAG