Gvermi6960.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6960.t1
Unique NameGvermi6960.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length330
Homology
BLAST of Gvermi6960.t1 vs. uniprot
Match: A0A2V3J4F6_9FLOR (Protein TIC 21, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4F6_9FLOR)

HSP 1 Score: 222 bits (566), Expect = 7.180e-67
Identity = 122/199 (61.31%), Postives = 149/199 (74.87%), Query Frame = 0
Query:  130 ETIPEGLQSASRALWRVGXXXXXXXXXXXXXXXXXLLFTFLFPGINVRTAASAVGFAVSGAGIVFAFLSLFWTYGYTRLALWLREKQTLEKAQLRIHRRLRFGLLFSITGIVILLVGLQAIVGTLLARLLGTGIASPNASQNLASGVMVSNPGLVQPVDILVVQACANGLTGMMIALVATVWFRAKEKKWISKSAVSKE 328
            E +PEGL+ ASRALWR+G                 LLF F+FPGINVR+AASAVG  VSG G++ AFLSLFWTYGYTRLA+WLR  Q  EKA++RI+R+LRFGLLFS+ G+V+LLVGLQA+VGTLLAR+ G GI++       A G +V +  LVQPVDILV+QACAN LTG+M+ALVAT WFR+KE +W S+S  S E
Sbjct:  148 EEVPEGLRKASRALWRIGWFTWWAQLILTVIAAVILLFAFVFPGINVRSAASAVGLGVSGVGVIIAFLSLFWTYGYTRLAIWLRVNQHPEKAKVRINRKLRFGLLFSVVGMVVLLVGLQAVVGTLLARVFG-GISATYGPAP-APGGLVPSASLVQPVDILVIQACANALTGLMMALVATTWFRSKESRW-SESLKSSE 343          
BLAST of Gvermi6960.t1 vs. uniprot
Match: R7QD54_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD54_CHOCR)

HSP 1 Score: 180 bits (457), Expect = 8.780e-51
Identity = 119/265 (44.91%), Postives = 156/265 (58.87%), Query Frame = 0
Query:   78 ESVENPGQLFSKLEDARKKRKEVSTEGRGV---DTKLSNGMNNALNTNNAEVYALETIPE--------GLQSASRALWRVGXXXXXXXXXXXXXXXXXLLFTFLFPGINVRTAASAVGFAVSGAGIVFAFLSLFWTYGYTRLALWLR-----EKQTLEKAQLRIHRRLRFGLLFSITGIVILLVGLQAIVGTLLARLLGTGIAS-PNASQNLASGVMVSNPG--LVQPVDILVVQACANGLTGMMIALVATVWFRAKEKKWISKS 323
            E  E P  LF KL   R+ R   S    GV     + +N MN  L   N E   L+ + E          + A+RA WR+G                 L+F+F FPG+NV+T+ASA+GF V+G G++FAF+SLFWTY YTRL+LWL        +T + AQ RI+R+LR GL  +I G+++ L GLQAIVGTLLARLL +G+A+ P AS  + +G     PG  +VQPVDILVVQA AN + G++ AL  TVW R + KKW  KS
Sbjct:   68 EPKEGPEVLFEKLNARRESRNSNS----GVVQSSLETANDMNQPLF--NREGEELKPVTEVVAPDNGMDFKKAARAFWRIGWMTWWLQLILTVVSGVILIFSFAFPGVNVKTSASALGFIVTGVGVLFAFVSLFWTYSYTRLSLWLSGDRVSTNRTPQVAQTRINRKLRIGLGIAIVGMIVSLTGLQAIVGTLLARLLSSGVATTPYASYQMGAGAAGVAPGSGIVQPVDILVVQASANAMMGLLAALATTVWLRGRSKKWQPKS 326          
BLAST of Gvermi6960.t1 vs. uniprot
Match: A0A1X6P373_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P373_PORUM)

HSP 1 Score: 117 bits (294), Expect = 6.500e-27
Identity = 74/189 (39.15%), Postives = 103/189 (54.50%), Query Frame = 0
Query:  138 SASRALWRVGXXXXXXXXXXXXXXXXXLLFTFLFPGINVRTAASAVGFAVSGAGIVFAFLSLFWTYGYTRLALWLREKQTLEKAQLR-------IHRRLRFGLLFSITGIVILLVGLQAIVGTLLARLLGTGIASPNASQNLASGVMVSNPGLVQPVDILVVQACANGLTGMMIALVATVWFRAKEKKW 319
            +AS +LWR G                 L+F+F FPG+ V T+AS +G  ++  G+V   +S  WTYGYTRL+L L                   I +RLR G+  ++ G+ + L+G+QAIVGTLLARLL +G+     +      V    PG VQPVDILVVQA ANG+ G++ AL  ++W   +  KW
Sbjct:  141 AASASLWRFGWIAWWSQFILTVIAGVILVFSFAFPGVAVATSASKIGTLLAAVGVVTGLVSNVWTYGYTRLSLSLGRAXXXXXXXXXXXXXXXSIRKRLRVGVGLAMAGLTVSLLGVQAIVGTLLARLLSSGLGESYGTVRAIGRV----PGGVQPVDILVVQAAANGMLGLVCALGVSLWLSTRIDKW 325          
BLAST of Gvermi6960.t1 vs. uniprot
Match: A0A7J7II36_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7II36_9RHOD)

HSP 1 Score: 83.2 bits (204), Expect = 1.250e-14
Identity = 56/153 (36.60%), Postives = 81/153 (52.94%), Query Frame = 0
Query:  175 NVRTAASAVGFAVSGAGIVFAFLSLFWTYGYTRLALWLREKQTLEKA--QLRIHRRLRFGLLFSITGIVILLVGLQAIVGTLLARLLGTGIASP---NASQNLASGVMVSNPGLVQPVDILVVQACANGLTGMMIALVATVW----FRAKEKK 318
               T A++ G   +G G+VFAFLS+FW YGY RLA  L   Q +        + R LR G+  +I G+ + L+G Q+I G LLA+ L  G+A P    A+ ++ +G      G VQ +DI VVQA  N L    + L   +W    FR  +++
Sbjct:  134 GATTTAASTGLLFAGIGLVFAFLSVFWAYGYIRLARRLMRAQKMGYGVRSENVFRTLRVGVFINILGMALTLIGAQSISGVLLAKALSQGVAGPLPFYATGSIQAGG--GTVGYVQALDIFVVQANTNALLSHFVGLCTALWMLWRFRGPQRR 284          
BLAST of Gvermi6960.t1 vs. uniprot
Match: A0A7S1XJJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJJ2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.900e-12
Identity = 61/198 (30.81%), Postives = 97/198 (48.99%), Query Frame = 0
Query:  134 EGLQSASRALWRVGXXXXXXXXXXXXXXXXXLLFTFLFP----GINVRTAASAVGFAVSGAGIVFAFLSLFWTYGYTRLALWLREKQTLE-KAQLRIHRR-LRFGLLFSITGIVILLVGLQAIVGTLLARLLG-TGIASPNASQNLASGVMVSNPGLVQPVDILVVQACANGLTGMMIALVATVWFRAKEKKWISKSA 324
            E     ++ LWR G                 LLF   F     G     +  A G  ++G G+  + LS+FWT+G+TR+A  LR+ + L  + + R+ RR LR G++ ++ G+   L G + IVGTL+A++L   G+  P      A+G  V+    +Q +DI +VQA  N L   + +L  T+W       W ++SA
Sbjct:   17 EARLETAKKLWRAGWTSWWIQTVLTVIASITLLFARTFAAAAGGSTAIQSGGAGGLFLAGLGVSLSALSVFWTWGFTRVARRLRKGEDLTPRLEARLIRRALRTGIVLNLVGMFATLFGAEQIVGTLVAKVLSFQGVTGP------AAGAYVAPTATLQALDIFIVQANTNTLLSHLCSLTITLWL-----SWATRSA 203          
BLAST of Gvermi6960.t1 vs. uniprot
Match: A0A7S1TR67_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR67_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-11
Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = 0
Query:  179 AASAVGFAVSGAGIVFAFLSLFWTYGYTRLALWLREKQTLE-KAQLRIHRR-LRFGLLFSITGIVILLVGLQAIVGTLLARLLG-TGIASPNASQNLASGVMVSNPGLVQPVDILVVQACANGLTGMMIALVATVWFRAKEKKWISKSA 324
            +  A G  ++G G+  + LS+FWT+G+TR+A  LR+ + L  + + R+ RR LR G++ ++ G+   L G + IVGTL+A++L   G+  P      A+G  V+    +Q +DI +VQA  N L   + +L  T+W       W ++SA
Sbjct:   17 SGGAGGLFLAGLGVSLSALSVFWTWGFTRVARRLRKGEDLTPRLEARLIRRALRTGIVLNLVGMFATLFGAEQIVGTLVAKVLSFQGVTGP------AAGAYVAPTATLQALDIFIVQANTNTLLSHLCSLTITLWL-----SWATRSA 154          
BLAST of Gvermi6960.t1 vs. uniprot
Match: A0A6U1BPE4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BPE4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.570e-10
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 0
Query:  184 GFAVSGAGIVFAFLSLFWTYGYTRLALWLR-EKQTLEKAQLRIHRRLRFGLLFSITGIVILLVGLQAIVGTLLARLLGTGIASPNASQNLASGVMVSNPGL---VQPVDILVVQACANGLTGMMIALVATVW 311
            G A+S AG++F FLSL WT GYTR A  +R  K        R+  RLR G++ ++ G ++ LV  + IVG L++R+L T        Q L S  +VS  G    +QP+DI VVQA  N L    ++L   +W
Sbjct:  132 GLALSMAGLLFNFLSLVWTSGYTRFATRIRLRKVDTTGLNDRVAGRLRTGVVLNLIGALLALVSAEQIVGLLISRVLST--------QGLQSLGVVSPVGFASAIQPLDIFVVQANTNVLFAHFLSLAGNLW 255          
BLAST of Gvermi6960.t1 vs. uniprot
Match: UPI00168347E0 (DUF3611 family protein n=1 Tax=Pseudanabaena sp. FACHB-2040 TaxID=2692859 RepID=UPI00168347E0)

HSP 1 Score: 65.5 bits (158), Expect = 5.390e-9
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 0
Query:  175 NVRTAASAVGFAVSGAGIVFAFLSLFWTYGYTRLALWLREKQTLEKAQLR-IHRRLRFGLLFSITGIVILLVGLQAIVGTLLARLLGTGIASPNASQNLASGVMVSNPG----LVQPVDILVVQACANGLTGMMIALVATVW 311
            N     +  G   +G G++  +   FW + YTRL   LR + +  +   +   + LR GLL S+TG+++ LVG QA+VG LL    G  +A P        G  +  PG     V+  DI ++QA  N L    ++LVAT+W
Sbjct:   55 NGANPGTGAGLLFAGLGLIAVYAGAFWAFRYTRLGRRLRSQDSGRRPTPKEAIQALRLGLLISLTGMLLTLVGGQALVGALL----GKALAQPQG------GAAIFTPGNINQYVEAFDIFIIQANINTLLAHFVSLVATLW 186          
BLAST of Gvermi6960.t1 vs. uniprot
Match: A0A8J6QTW0_9CYAN (DUF3611 family protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6QTW0_9CYAN)

HSP 1 Score: 63.5 bits (153), Expect = 2.550e-8
Identity = 44/138 (31.88%), Postives = 74/138 (53.62%), Query Frame = 0
Query:  175 NVRTAASAVGFAVSGAGIVFAFLSLFWTYGYTRLALWLREKQT-LEKAQLRIHRRLRFGLLFSITGIVILLVGLQAIVGTLLARLLGTGIASPNASQNLASGVMVSNPGLVQPVDILVVQACANGLTGMMIALVATVW 311
            N   A +  G   +  G+V   +S++W++ Y R++  LR   T L  ++    + L+ G++ ++ G+++ +VG +AIVG L+AR     IA P  S  L     V+N   +QP+D  VVQA  N + G    LV++ W
Sbjct:   57 NATRAGTGFGIFFAVCGLVALGISIYWSFRYVRISRQLRAPNTSLRPSKADTIQLLQLGIVLNLVGMLLTIVGAEAIVGGLIAR----AIAQPQNSPLLYG---VNNIPTIQPLDFFVVQANTNTIAGHFAGLVSSFW 187          
BLAST of Gvermi6960.t1 vs. uniprot
Match: A0A2T1D302_9CYAN (Uncharacterized protein n=1 Tax=filamentous cyanobacterium CCP2 TaxID=2107700 RepID=A0A2T1D302_9CYAN)

HSP 1 Score: 62.8 bits (151), Expect = 5.050e-8
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 0
Query:  188 SGAGIVFAFLSL-------FWTYGYTRLALWLREKQTLEKAQLRIHRR-----LRFGLLFSITGIVILLVGLQAIVGTLLARLLGTGIASPNASQNLASGVMVSNP-GLVQPVDILVVQACANGLTGMMIALVATVW 311
            +GAG+ FA L L       +W + YTRLA   R+ +T   +Q R  R      LRFGLL S+ G+ + ++G+QAI G+L+ +    G A           +   NP   + P+D+ VVQA AN L    + LVAT+W
Sbjct:   69 TGAGLFFAVLGLISLFIGAYWAFRYTRLA---RQLKT-PNSQSRPRRGDAMQVLRFGLLISLVGLGLTILGMQAIAGSLVLKSFEQGFA-----------IFSGNPLRFITPLDLFVVQAAANTLMAHFVGLVATLW 190          
The following BLAST results are available for this feature:
BLAST of Gvermi6960.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4F6_9FLOR7.180e-6761.31Protein TIC 21, chloroplastic n=1 Tax=Gracilariops... [more]
R7QD54_CHOCR8.780e-5144.91Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P373_PORUM6.500e-2739.15Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7J7II36_9RHOD1.250e-1436.60Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S1XJJ2_9STRA1.900e-1230.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TR67_9STRA1.790e-1134.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U1BPE4_9STRA6.570e-1039.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI00168347E05.390e-933.10DUF3611 family protein n=1 Tax=Pseudanabaena sp. F... [more]
A0A8J6QTW0_9CYAN2.550e-831.88DUF3611 family protein n=3 Tax=unclassified Tricho... [more]
A0A2T1D302_9CYAN5.050e-836.50Uncharacterized protein n=1 Tax=filamentous cyanob... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022051Protein of unknown function DUF3611PFAMPF12263DUF3611coord: 135..312
e-value: 1.1E-34
score: 119.8
IPR022051Protein of unknown function DUF3611PANTHERPTHR34548PROTEIN TIC 21, CHLOROPLASTICcoord: 115..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..77
NoneNo IPR availablePANTHERPTHR34548:SF2PROTEIN TIC 21, CHLOROPLASTICcoord: 115..311
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 148..171
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 172..182
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 289..312
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 211..230
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 313..329
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 252..288
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 231..251
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 183..210
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..147
NoneNo IPR availableTMHMMTMhelixcoord: 229..251
NoneNo IPR availableTMHMMTMhelixcoord: 149..171
NoneNo IPR availableTMHMMTMhelixcoord: 181..203
NoneNo IPR availableTMHMMTMhelixcoord: 290..312
IPR036259MFS transporter superfamilySUPERFAMILY103473MFS general substrate transportercoord: 139..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:752514..753503 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6960.t1Gvermi6960.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 752514..753503 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6960.t1 ID=Gvermi6960.t1|Name=Gvermi6960.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=330bp
MENVYVAFVGNVVPKFLGNPECITRFKRSDASRVQIVQPRTRYFRSRARF
YGKLGSTGNHESDRNENENESAESEGRESVENPGQLFSKLEDARKKRKEV
STEGRGVDTKLSNGMNNALNTNNAEVYALETIPEGLQSASRALWRVGWVV
WWLQLILTVIAAVILLFTFLFPGINVRTAASAVGFAVSGAGIVFAFLSLF
WTYGYTRLALWLREKQTLEKAQLRIHRRLRFGLLFSITGIVILLVGLQAI
VGTLLARLLGTGIASPNASQNLASGVMVSNPGLVQPVDILVVQACANGLT
GMMIALVATVWFRAKEKKWISKSAVSKES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022051DUF3611
IPR036259MFS_trans_sf