Gvermi6958.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6958.t1
Unique NameGvermi6958.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length654
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:747976..749937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S314_65V6.1
PFAMsTPR_8
Max annot lvl35493|Streptophyta
KEGG koko:K12607
KEGG Pathwayko03018,map03018
Evalue7.82e-27
EggNOG OGsKOG2471@1|root,KOG2471@2759|Eukaryota,37MMW@33090|Viridiplantae,3G7V0@35493|Streptophyta
DescriptionCCR4-NOT transcription complex subunit
COG categoryS
BRITEko00000,ko00001,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6958Gvermi6958Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 747976..749937 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6958.t1.stop1Gvermi6958.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 747976..747978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6958.t1.CDS1Gvermi6958.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 747976..749937 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6958.t1.exon1Gvermi6958.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 747976..749937 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6958.t1.start1Gvermi6958.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 749935..749937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6958.t1Gvermi6958.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 747976..749937 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp
MAADAITFFLERDFAATHQALLSLTELPKENGSTRQPIEDPRIRHNRLLS
SFYEQNTLQNLEDIVLFIASSLPTAQKPTSATDFLSSIVENDSALKQTLT
HLGPVALYNLAVIAYNLGFVKSAAAVGEVLYYNIEAMDDWLALRTCFLLI
DIHLHLSETTSALKVFSYAEKLLPNFSGSGEASNASSEIRILTPNWPTRT
KCVLEQPASYEDAKFCIHVYNARMNSASDELVDGSRNLRKEAKNAVLAAG
NQQSRPTAVALLVKARVEPNYQKGLRILANIVSQSSPTTLRKILPLTLNS
LGILHHRLGCHALAACYFEHSRQAFIKLFGNHENSDADQKLCHLTTLSNV
HNTHVAYNLALQYMQLSDFSKALDCFMFCARSDYTYASNSPLLWIRIAEC
CVGIERNSNRSLLVVEGQGRGRRFVMRAAERDEGLNMEYAATCARAAIMI
LDRQRVKAQDTRESPSKSKRNSGSMNSSFNGENGHDHTSSSGGADEDIHL
RSAALNLLAYSSLSFDPKSVIKACKEIQKLFPNGSNDRTLLSRLYAAEAY
CMLNRPREAEKQLNPMVNPSIQDSAAREAAFINWALTHACNGDVGAASRA
ARYALEKSSTISTNQQRYRSLRRDTIFAASYIFLRNGETDNARRCLRSLL
GST*
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spliced messenger RNA

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1962bp|location=Sequence derived from alignment at ScGOVlb_24229:747976..749937- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAGACGCTATCACTTTCTTTCTGGAACGCGACTTTGCTGCCAC
TCATCAGGCATTGCTTTCTCTCACAGAGCTTCCAAAGGAGAATGGCAGCA
CAAGGCAACCCATAGAAGATCCTCGCATACGGCACAACCGGCTTCTTTCT
TCATTTTACGAGCAGAACACGCTACAAAATCTTGAGGACATCGTTCTGTT
CATCGCCTCATCGCTCCCAACGGCACAGAAGCCTACATCTGCAACCGATT
TTCTATCTAGCATAGTAGAAAATGACTCTGCACTAAAGCAAACTCTCACA
CATCTCGGCCCGGTTGCTCTCTACAACCTAGCCGTAATCGCCTACAATCT
TGGATTCGTAAAGTCAGCAGCTGCTGTCGGAGAAGTTCTGTACTACAACA
TAGAGGCTATGGATGACTGGCTTGCGCTTCGAACTTGCTTTCTTCTCATT
GATATCCACCTTCACCTGTCTGAAACCACTTCTGCGTTGAAAGTTTTTTC
TTACGCCGAGAAGCTTTTGCCCAACTTTTCGGGTTCTGGGGAAGCTTCCA
ATGCTTCCTCAGAAATAAGGATTCTAACCCCAAATTGGCCAACGCGCACC
AAGTGTGTTCTAGAACAACCCGCGTCATATGAAGACGCCAAGTTTTGCAT
ACATGTGTACAACGCACGTATGAATTCCGCTTCAGACGAGCTTGTGGATG
GTTCCCGTAATCTTCGAAAAGAAGCAAAGAATGCAGTCTTGGCCGCGGGC
AATCAGCAAAGTAGGCCAACAGCCGTTGCCCTGCTTGTCAAAGCGCGAGT
AGAGCCCAACTATCAAAAAGGGCTCCGCATTCTCGCTAATATTGTCAGCC
AGTCGTCACCGACTACTTTGCGCAAGATCCTTCCCCTTACTTTGAACAGC
CTAGGAATTCTTCATCATCGATTGGGATGTCATGCGCTTGCCGCATGCTA
CTTTGAACATTCTCGTCAGGCATTTATCAAGCTATTTGGGAACCATGAAA
ATAGTGACGCTGACCAGAAGCTGTGCCACTTAACAACACTCAGCAATGTT
CATAACACACATGTTGCTTATAACTTGGCTCTCCAATACATGCAGCTAAG
TGATTTTTCGAAGGCATTGGACTGCTTTATGTTCTGTGCGCGAAGTGATT
ACACTTACGCAAGCAACTCTCCTCTGTTGTGGATTCGAATCGCCGAATGT
TGTGTTGGCATCGAGAGAAATAGCAATCGTTCACTTCTTGTTGTTGAAGG
TCAAGGGAGAGGCCGCCGTTTTGTCATGCGGGCTGCTGAGAGGGATGAAG
GACTCAACATGGAATATGCGGCCACATGTGCCAGGGCAGCGATTATGATA
TTAGATCGTCAGAGAGTGAAAGCACAGGACACTCGAGAATCACCCTCGAA
ATCGAAACGAAACTCCGGATCTATGAATTCATCTTTCAATGGGGAGAATG
GTCATGATCACACATCTTCATCGGGTGGTGCTGATGAAGACATACATTTG
CGCAGCGCTGCACTTAACCTGCTGGCATACTCCTCTCTTTCATTTGACCC
CAAATCTGTTATCAAGGCTTGCAAAGAAATCCAAAAACTCTTTCCGAACG
GAAGCAATGACAGAACTCTTCTCAGTCGATTGTATGCGGCTGAAGCGTAC
TGTATGTTGAACAGACCAAGAGAGGCCGAGAAGCAATTGAATCCTATGGT
GAATCCTAGCATTCAGGATTCTGCTGCCAGGGAAGCCGCATTCATAAACT
GGGCTTTAACTCACGCATGTAACGGTGATGTTGGAGCAGCTTCTAGAGCA
GCAAGGTATGCTCTCGAGAAATCTAGCACTATATCCACAAATCAGCAACG
ATACCGCTCCTTACGAAGGGATACCATTTTCGCTGCCTCGTATATTTTTC
TCCGCAATGGGGAAACTGACAACGCTCGTAGATGTCTCCGATCCCTGCTT
GGGTCAACGTAA
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protein sequence of Gvermi6958.t1

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=654bp
MAADAITFFLERDFAATHQALLSLTELPKENGSTRQPIEDPRIRHNRLLS
SFYEQNTLQNLEDIVLFIASSLPTAQKPTSATDFLSSIVENDSALKQTLT
HLGPVALYNLAVIAYNLGFVKSAAAVGEVLYYNIEAMDDWLALRTCFLLI
DIHLHLSETTSALKVFSYAEKLLPNFSGSGEASNASSEIRILTPNWPTRT
KCVLEQPASYEDAKFCIHVYNARMNSASDELVDGSRNLRKEAKNAVLAAG
NQQSRPTAVALLVKARVEPNYQKGLRILANIVSQSSPTTLRKILPLTLNS
LGILHHRLGCHALAACYFEHSRQAFIKLFGNHENSDADQKLCHLTTLSNV
HNTHVAYNLALQYMQLSDFSKALDCFMFCARSDYTYASNSPLLWIRIAEC
CVGIERNSNRSLLVVEGQGRGRRFVMRAAERDEGLNMEYAATCARAAIMI
LDRQRVKAQDTRESPSKSKRNSGSMNSSFNGENGHDHTSSSGGADEDIHL
RSAALNLLAYSSLSFDPKSVIKACKEIQKLFPNGSNDRTLLSRLYAAEAY
CMLNRPREAEKQLNPMVNPSIQDSAAREAAFINWALTHACNGDVGAASRA
ARYALEKSSTISTNQQRYRSLRRDTIFAASYIFLRNGETDNARRCLRSLL
GST*
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mRNA from alignment at ScGOVlb_24229:747976..749937-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1962bp|location=Sequence derived from alignment at ScGOVlb_24229:747976..749937- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGACGCTATCACTTTCTTTCTGGAACGCGACTTTGCTGCCAC
TCATCAGGCATTGCTTTCTCTCACAGAGCTTCCAAAGGAGAATGGCAGCA
CAAGGCAACCCATAGAAGATCCTCGCATACGGCACAACCGGCTTCTTTCT
TCATTTTACGAGCAGAACACGCTACAAAATCTTGAGGACATCGTTCTGTT
CATCGCCTCATCGCTCCCAACGGCACAGAAGCCTACATCTGCAACCGATT
TTCTATCTAGCATAGTAGAAAATGACTCTGCACTAAAGCAAACTCTCACA
CATCTCGGCCCGGTTGCTCTCTACAACCTAGCCGTAATCGCCTACAATCT
TGGATTCGTAAAGTCAGCAGCTGCTGTCGGAGAAGTTCTGTACTACAACA
TAGAGGCTATGGATGACTGGCTTGCGCTTCGAACTTGCTTTCTTCTCATT
GATATCCACCTTCACCTGTCTGAAACCACTTCTGCGTTGAAAGTTTTTTC
TTACGCCGAGAAGCTTTTGCCCAACTTTTCGGGTTCTGGGGAAGCTTCCA
ATGCTTCCTCAGAAATAAGGATTCTAACCCCAAATTGGCCAACGCGCACC
AAGTGTGTTCTAGAACAACCCGCGTCATATGAAGACGCCAAGTTTTGCAT
ACATGTGTACAACGCACGTATGAATTCCGCTTCAGACGAGCTTGTGGATG
GTTCCCGTAATCTTCGAAAAGAAGCAAAGAATGCAGTCTTGGCCGCGGGC
AATCAGCAAAGTAGGCCAACAGCCGTTGCCCTGCTTGTCAAAGCGCGAGT
AGAGCCCAACTATCAAAAAGGGCTCCGCATTCTCGCTAATATTGTCAGCC
AGTCGTCACCGACTACTTTGCGCAAGATCCTTCCCCTTACTTTGAACAGC
CTAGGAATTCTTCATCATCGATTGGGATGTCATGCGCTTGCCGCATGCTA
CTTTGAACATTCTCGTCAGGCATTTATCAAGCTATTTGGGAACCATGAAA
ATAGTGACGCTGACCAGAAGCTGTGCCACTTAACAACACTCAGCAATGTT
CATAACACACATGTTGCTTATAACTTGGCTCTCCAATACATGCAGCTAAG
TGATTTTTCGAAGGCATTGGACTGCTTTATGTTCTGTGCGCGAAGTGATT
ACACTTACGCAAGCAACTCTCCTCTGTTGTGGATTCGAATCGCCGAATGT
TGTGTTGGCATCGAGAGAAATAGCAATCGTTCACTTCTTGTTGTTGAAGG
TCAAGGGAGAGGCCGCCGTTTTGTCATGCGGGCTGCTGAGAGGGATGAAG
GACTCAACATGGAATATGCGGCCACATGTGCCAGGGCAGCGATTATGATA
TTAGATCGTCAGAGAGTGAAAGCACAGGACACTCGAGAATCACCCTCGAA
ATCGAAACGAAACTCCGGATCTATGAATTCATCTTTCAATGGGGAGAATG
GTCATGATCACACATCTTCATCGGGTGGTGCTGATGAAGACATACATTTG
CGCAGCGCTGCACTTAACCTGCTGGCATACTCCTCTCTTTCATTTGACCC
CAAATCTGTTATCAAGGCTTGCAAAGAAATCCAAAAACTCTTTCCGAACG
GAAGCAATGACAGAACTCTTCTCAGTCGATTGTATGCGGCTGAAGCGTAC
TGTATGTTGAACAGACCAAGAGAGGCCGAGAAGCAATTGAATCCTATGGT
GAATCCTAGCATTCAGGATTCTGCTGCCAGGGAAGCCGCATTCATAAACT
GGGCTTTAACTCACGCATGTAACGGTGATGTTGGAGCAGCTTCTAGAGCA
GCAAGGTATGCTCTCGAGAAATCTAGCACTATATCCACAAATCAGCAACG
ATACCGCTCCTTACGAAGGGATACCATTTTCGCTGCCTCGTATATTTTTC
TCCGCAATGGGGAAACTGACAACGCTCGTAGATGTCTCCGATCCCTGCTT
GGGTCAACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:747976..749937-

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1962bp|location=Sequence derived from alignment at ScGOVlb_24229:747976..749937- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGACGCTATCACTTTCTTTCTGGAACGCGACTTTGCTGCCAC
TCATCAGGCATTGCTTTCTCTCACAGAGCTTCCAAAGGAGAATGGCAGCA
CAAGGCAACCCATAGAAGATCCTCGCATACGGCACAACCGGCTTCTTTCT
TCATTTTACGAGCAGAACACGCTACAAAATCTTGAGGACATCGTTCTGTT
CATCGCCTCATCGCTCCCAACGGCACAGAAGCCTACATCTGCAACCGATT
TTCTATCTAGCATAGTAGAAAATGACTCTGCACTAAAGCAAACTCTCACA
CATCTCGGCCCGGTTGCTCTCTACAACCTAGCCGTAATCGCCTACAATCT
TGGATTCGTAAAGTCAGCAGCTGCTGTCGGAGAAGTTCTGTACTACAACA
TAGAGGCTATGGATGACTGGCTTGCGCTTCGAACTTGCTTTCTTCTCATT
GATATCCACCTTCACCTGTCTGAAACCACTTCTGCGTTGAAAGTTTTTTC
TTACGCCGAGAAGCTTTTGCCCAACTTTTCGGGTTCTGGGGAAGCTTCCA
ATGCTTCCTCAGAAATAAGGATTCTAACCCCAAATTGGCCAACGCGCACC
AAGTGTGTTCTAGAACAACCCGCGTCATATGAAGACGCCAAGTTTTGCAT
ACATGTGTACAACGCACGTATGAATTCCGCTTCAGACGAGCTTGTGGATG
GTTCCCGTAATCTTCGAAAAGAAGCAAAGAATGCAGTCTTGGCCGCGGGC
AATCAGCAAAGTAGGCCAACAGCCGTTGCCCTGCTTGTCAAAGCGCGAGT
AGAGCCCAACTATCAAAAAGGGCTCCGCATTCTCGCTAATATTGTCAGCC
AGTCGTCACCGACTACTTTGCGCAAGATCCTTCCCCTTACTTTGAACAGC
CTAGGAATTCTTCATCATCGATTGGGATGTCATGCGCTTGCCGCATGCTA
CTTTGAACATTCTCGTCAGGCATTTATCAAGCTATTTGGGAACCATGAAA
ATAGTGACGCTGACCAGAAGCTGTGCCACTTAACAACACTCAGCAATGTT
CATAACACACATGTTGCTTATAACTTGGCTCTCCAATACATGCAGCTAAG
TGATTTTTCGAAGGCATTGGACTGCTTTATGTTCTGTGCGCGAAGTGATT
ACACTTACGCAAGCAACTCTCCTCTGTTGTGGATTCGAATCGCCGAATGT
TGTGTTGGCATCGAGAGAAATAGCAATCGTTCACTTCTTGTTGTTGAAGG
TCAAGGGAGAGGCCGCCGTTTTGTCATGCGGGCTGCTGAGAGGGATGAAG
GACTCAACATGGAATATGCGGCCACATGTGCCAGGGCAGCGATTATGATA
TTAGATCGTCAGAGAGTGAAAGCACAGGACACTCGAGAATCACCCTCGAA
ATCGAAACGAAACTCCGGATCTATGAATTCATCTTTCAATGGGGAGAATG
GTCATGATCACACATCTTCATCGGGTGGTGCTGATGAAGACATACATTTG
CGCAGCGCTGCACTTAACCTGCTGGCATACTCCTCTCTTTCATTTGACCC
CAAATCTGTTATCAAGGCTTGCAAAGAAATCCAAAAACTCTTTCCGAACG
GAAGCAATGACAGAACTCTTCTCAGTCGATTGTATGCGGCTGAAGCGTAC
TGTATGTTGAACAGACCAAGAGAGGCCGAGAAGCAATTGAATCCTATGGT
GAATCCTAGCATTCAGGATTCTGCTGCCAGGGAAGCCGCATTCATAAACT
GGGCTTTAACTCACGCATGTAACGGTGATGTTGGAGCAGCTTCTAGAGCA
GCAAGGTATGCTCTCGAGAAATCTAGCACTATATCCACAAATCAGCAACG
ATACCGCTCCTTACGAAGGGATACCATTTTCGCTGCCTCGTATATTTTTC
TCCGCAATGGGGAAACTGACAACGCTCGTAGATGTCTCCGATCCCTGCTT
GGGTCAACGTAA
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