Gvermi6958.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6958.t1
Unique Name	Gvermi6958.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	654

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:747976..749937 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S314_65V6.1
PFAMs	TPR_8
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12607
KEGG Pathway	ko03018,map03018
Evalue	7.82e-27
EggNOG OGs	KOG2471@1\|root,KOG2471@2759\|Eukaryota,37MMW@33090\|Viridiplantae,3G7V0@35493\|Streptophyta
Description	CCR4-NOT transcription complex subunit
COG category	S
BRITE	ko00000,ko00001,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6958	Gvermi6958	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 747976..749937 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6958.t1.stop1	Gvermi6958.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 747976..747978 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6958.t1.CDS1	Gvermi6958.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 747976..749937 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6958.t1.exon1	Gvermi6958.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 747976..749937 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6958.t1.start1	Gvermi6958.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 749935..749937 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6958.t1	Gvermi6958.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 747976..749937 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:747976..749937-
coding sequence from alignment at ScGOVlb_24229:747976..749937-

mRNA sequence

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp
MAADAITFFLERDFAATHQALLSLTELPKENGSTRQPIEDPRIRHNRLLS
SFYEQNTLQNLEDIVLFIASSLPTAQKPTSATDFLSSIVENDSALKQTLT
HLGPVALYNLAVIAYNLGFVKSAAAVGEVLYYNIEAMDDWLALRTCFLLI
DIHLHLSETTSALKVFSYAEKLLPNFSGSGEASNASSEIRILTPNWPTRT
KCVLEQPASYEDAKFCIHVYNARMNSASDELVDGSRNLRKEAKNAVLAAG
NQQSRPTAVALLVKARVEPNYQKGLRILANIVSQSSPTTLRKILPLTLNS
LGILHHRLGCHALAACYFEHSRQAFIKLFGNHENSDADQKLCHLTTLSNV
HNTHVAYNLALQYMQLSDFSKALDCFMFCARSDYTYASNSPLLWIRIAEC
CVGIERNSNRSLLVVEGQGRGRRFVMRAAERDEGLNMEYAATCARAAIMI
LDRQRVKAQDTRESPSKSKRNSGSMNSSFNGENGHDHTSSSGGADEDIHL
RSAALNLLAYSSLSFDPKSVIKACKEIQKLFPNGSNDRTLLSRLYAAEAY
CMLNRPREAEKQLNPMVNPSIQDSAAREAAFINWALTHACNGDVGAASRA
ARYALEKSSTISTNQQRYRSLRRDTIFAASYIFLRNGETDNARRCLRSLL
GST*

spliced messenger RNA

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1962bp|location=Sequence derived from alignment at ScGOVlb_24229:747976..749937- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAGACGCTATCACTTTCTTTCTGGAACGCGACTTTGCTGCCAC
TCATCAGGCATTGCTTTCTCTCACAGAGCTTCCAAAGGAGAATGGCAGCA
CAAGGCAACCCATAGAAGATCCTCGCATACGGCACAACCGGCTTCTTTCT
TCATTTTACGAGCAGAACACGCTACAAAATCTTGAGGACATCGTTCTGTT
CATCGCCTCATCGCTCCCAACGGCACAGAAGCCTACATCTGCAACCGATT
TTCTATCTAGCATAGTAGAAAATGACTCTGCACTAAAGCAAACTCTCACA
CATCTCGGCCCGGTTGCTCTCTACAACCTAGCCGTAATCGCCTACAATCT
TGGATTCGTAAAGTCAGCAGCTGCTGTCGGAGAAGTTCTGTACTACAACA
TAGAGGCTATGGATGACTGGCTTGCGCTTCGAACTTGCTTTCTTCTCATT
GATATCCACCTTCACCTGTCTGAAACCACTTCTGCGTTGAAAGTTTTTTC
TTACGCCGAGAAGCTTTTGCCCAACTTTTCGGGTTCTGGGGAAGCTTCCA
ATGCTTCCTCAGAAATAAGGATTCTAACCCCAAATTGGCCAACGCGCACC
AAGTGTGTTCTAGAACAACCCGCGTCATATGAAGACGCCAAGTTTTGCAT
ACATGTGTACAACGCACGTATGAATTCCGCTTCAGACGAGCTTGTGGATG
GTTCCCGTAATCTTCGAAAAGAAGCAAAGAATGCAGTCTTGGCCGCGGGC
AATCAGCAAAGTAGGCCAACAGCCGTTGCCCTGCTTGTCAAAGCGCGAGT
AGAGCCCAACTATCAAAAAGGGCTCCGCATTCTCGCTAATATTGTCAGCC
AGTCGTCACCGACTACTTTGCGCAAGATCCTTCCCCTTACTTTGAACAGC
CTAGGAATTCTTCATCATCGATTGGGATGTCATGCGCTTGCCGCATGCTA
CTTTGAACATTCTCGTCAGGCATTTATCAAGCTATTTGGGAACCATGAAA
ATAGTGACGCTGACCAGAAGCTGTGCCACTTAACAACACTCAGCAATGTT
CATAACACACATGTTGCTTATAACTTGGCTCTCCAATACATGCAGCTAAG
TGATTTTTCGAAGGCATTGGACTGCTTTATGTTCTGTGCGCGAAGTGATT
ACACTTACGCAAGCAACTCTCCTCTGTTGTGGATTCGAATCGCCGAATGT
TGTGTTGGCATCGAGAGAAATAGCAATCGTTCACTTCTTGTTGTTGAAGG
TCAAGGGAGAGGCCGCCGTTTTGTCATGCGGGCTGCTGAGAGGGATGAAG
GACTCAACATGGAATATGCGGCCACATGTGCCAGGGCAGCGATTATGATA
TTAGATCGTCAGAGAGTGAAAGCACAGGACACTCGAGAATCACCCTCGAA
ATCGAAACGAAACTCCGGATCTATGAATTCATCTTTCAATGGGGAGAATG
GTCATGATCACACATCTTCATCGGGTGGTGCTGATGAAGACATACATTTG
CGCAGCGCTGCACTTAACCTGCTGGCATACTCCTCTCTTTCATTTGACCC
CAAATCTGTTATCAAGGCTTGCAAAGAAATCCAAAAACTCTTTCCGAACG
GAAGCAATGACAGAACTCTTCTCAGTCGATTGTATGCGGCTGAAGCGTAC
TGTATGTTGAACAGACCAAGAGAGGCCGAGAAGCAATTGAATCCTATGGT
GAATCCTAGCATTCAGGATTCTGCTGCCAGGGAAGCCGCATTCATAAACT
GGGCTTTAACTCACGCATGTAACGGTGATGTTGGAGCAGCTTCTAGAGCA
GCAAGGTATGCTCTCGAGAAATCTAGCACTATATCCACAAATCAGCAACG
ATACCGCTCCTTACGAAGGGATACCATTTTCGCTGCCTCGTATATTTTTC
TCCGCAATGGGGAAACTGACAACGCTCGTAGATGTCTCCGATCCCTGCTT
GGGTCAACGTAA

protein sequence of Gvermi6958.t1

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=654bp
MAADAITFFLERDFAATHQALLSLTELPKENGSTRQPIEDPRIRHNRLLS
SFYEQNTLQNLEDIVLFIASSLPTAQKPTSATDFLSSIVENDSALKQTLT
HLGPVALYNLAVIAYNLGFVKSAAAVGEVLYYNIEAMDDWLALRTCFLLI
DIHLHLSETTSALKVFSYAEKLLPNFSGSGEASNASSEIRILTPNWPTRT
KCVLEQPASYEDAKFCIHVYNARMNSASDELVDGSRNLRKEAKNAVLAAG
NQQSRPTAVALLVKARVEPNYQKGLRILANIVSQSSPTTLRKILPLTLNS
LGILHHRLGCHALAACYFEHSRQAFIKLFGNHENSDADQKLCHLTTLSNV
HNTHVAYNLALQYMQLSDFSKALDCFMFCARSDYTYASNSPLLWIRIAEC
CVGIERNSNRSLLVVEGQGRGRRFVMRAAERDEGLNMEYAATCARAAIMI
LDRQRVKAQDTRESPSKSKRNSGSMNSSFNGENGHDHTSSSGGADEDIHL
RSAALNLLAYSSLSFDPKSVIKACKEIQKLFPNGSNDRTLLSRLYAAEAY
CMLNRPREAEKQLNPMVNPSIQDSAAREAAFINWALTHACNGDVGAASRA
ARYALEKSSTISTNQQRYRSLRRDTIFAASYIFLRNGETDNARRCLRSLL
GST*

mRNA from alignment at ScGOVlb_24229:747976..749937-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1962bp|location=Sequence derived from alignment at ScGOVlb_24229:747976..749937- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGACGCTATCACTTTCTTTCTGGAACGCGACTTTGCTGCCAC
TCATCAGGCATTGCTTTCTCTCACAGAGCTTCCAAAGGAGAATGGCAGCA
CAAGGCAACCCATAGAAGATCCTCGCATACGGCACAACCGGCTTCTTTCT
TCATTTTACGAGCAGAACACGCTACAAAATCTTGAGGACATCGTTCTGTT
CATCGCCTCATCGCTCCCAACGGCACAGAAGCCTACATCTGCAACCGATT
TTCTATCTAGCATAGTAGAAAATGACTCTGCACTAAAGCAAACTCTCACA
CATCTCGGCCCGGTTGCTCTCTACAACCTAGCCGTAATCGCCTACAATCT
TGGATTCGTAAAGTCAGCAGCTGCTGTCGGAGAAGTTCTGTACTACAACA
TAGAGGCTATGGATGACTGGCTTGCGCTTCGAACTTGCTTTCTTCTCATT
GATATCCACCTTCACCTGTCTGAAACCACTTCTGCGTTGAAAGTTTTTTC
TTACGCCGAGAAGCTTTTGCCCAACTTTTCGGGTTCTGGGGAAGCTTCCA
ATGCTTCCTCAGAAATAAGGATTCTAACCCCAAATTGGCCAACGCGCACC
AAGTGTGTTCTAGAACAACCCGCGTCATATGAAGACGCCAAGTTTTGCAT
ACATGTGTACAACGCACGTATGAATTCCGCTTCAGACGAGCTTGTGGATG
GTTCCCGTAATCTTCGAAAAGAAGCAAAGAATGCAGTCTTGGCCGCGGGC
AATCAGCAAAGTAGGCCAACAGCCGTTGCCCTGCTTGTCAAAGCGCGAGT
AGAGCCCAACTATCAAAAAGGGCTCCGCATTCTCGCTAATATTGTCAGCC
AGTCGTCACCGACTACTTTGCGCAAGATCCTTCCCCTTACTTTGAACAGC
CTAGGAATTCTTCATCATCGATTGGGATGTCATGCGCTTGCCGCATGCTA
CTTTGAACATTCTCGTCAGGCATTTATCAAGCTATTTGGGAACCATGAAA
ATAGTGACGCTGACCAGAAGCTGTGCCACTTAACAACACTCAGCAATGTT
CATAACACACATGTTGCTTATAACTTGGCTCTCCAATACATGCAGCTAAG
TGATTTTTCGAAGGCATTGGACTGCTTTATGTTCTGTGCGCGAAGTGATT
ACACTTACGCAAGCAACTCTCCTCTGTTGTGGATTCGAATCGCCGAATGT
TGTGTTGGCATCGAGAGAAATAGCAATCGTTCACTTCTTGTTGTTGAAGG
TCAAGGGAGAGGCCGCCGTTTTGTCATGCGGGCTGCTGAGAGGGATGAAG
GACTCAACATGGAATATGCGGCCACATGTGCCAGGGCAGCGATTATGATA
TTAGATCGTCAGAGAGTGAAAGCACAGGACACTCGAGAATCACCCTCGAA
ATCGAAACGAAACTCCGGATCTATGAATTCATCTTTCAATGGGGAGAATG
GTCATGATCACACATCTTCATCGGGTGGTGCTGATGAAGACATACATTTG
CGCAGCGCTGCACTTAACCTGCTGGCATACTCCTCTCTTTCATTTGACCC
CAAATCTGTTATCAAGGCTTGCAAAGAAATCCAAAAACTCTTTCCGAACG
GAAGCAATGACAGAACTCTTCTCAGTCGATTGTATGCGGCTGAAGCGTAC
TGTATGTTGAACAGACCAAGAGAGGCCGAGAAGCAATTGAATCCTATGGT
GAATCCTAGCATTCAGGATTCTGCTGCCAGGGAAGCCGCATTCATAAACT
GGGCTTTAACTCACGCATGTAACGGTGATGTTGGAGCAGCTTCTAGAGCA
GCAAGGTATGCTCTCGAGAAATCTAGCACTATATCCACAAATCAGCAACG
ATACCGCTCCTTACGAAGGGATACCATTTTCGCTGCCTCGTATATTTTTC
TCCGCAATGGGGAAACTGACAACGCTCGTAGATGTCTCCGATCCCTGCTT
GGGTCAACGTAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:747976..749937-

>Gvermi6958.t1 ID=Gvermi6958.t1|Name=Gvermi6958.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1962bp|location=Sequence derived from alignment at ScGOVlb_24229:747976..749937- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGACGCTATCACTTTCTTTCTGGAACGCGACTTTGCTGCCAC
TCATCAGGCATTGCTTTCTCTCACAGAGCTTCCAAAGGAGAATGGCAGCA
CAAGGCAACCCATAGAAGATCCTCGCATACGGCACAACCGGCTTCTTTCT
TCATTTTACGAGCAGAACACGCTACAAAATCTTGAGGACATCGTTCTGTT
CATCGCCTCATCGCTCCCAACGGCACAGAAGCCTACATCTGCAACCGATT
TTCTATCTAGCATAGTAGAAAATGACTCTGCACTAAAGCAAACTCTCACA
CATCTCGGCCCGGTTGCTCTCTACAACCTAGCCGTAATCGCCTACAATCT
TGGATTCGTAAAGTCAGCAGCTGCTGTCGGAGAAGTTCTGTACTACAACA
TAGAGGCTATGGATGACTGGCTTGCGCTTCGAACTTGCTTTCTTCTCATT
GATATCCACCTTCACCTGTCTGAAACCACTTCTGCGTTGAAAGTTTTTTC
TTACGCCGAGAAGCTTTTGCCCAACTTTTCGGGTTCTGGGGAAGCTTCCA
ATGCTTCCTCAGAAATAAGGATTCTAACCCCAAATTGGCCAACGCGCACC
AAGTGTGTTCTAGAACAACCCGCGTCATATGAAGACGCCAAGTTTTGCAT
ACATGTGTACAACGCACGTATGAATTCCGCTTCAGACGAGCTTGTGGATG
GTTCCCGTAATCTTCGAAAAGAAGCAAAGAATGCAGTCTTGGCCGCGGGC
AATCAGCAAAGTAGGCCAACAGCCGTTGCCCTGCTTGTCAAAGCGCGAGT
AGAGCCCAACTATCAAAAAGGGCTCCGCATTCTCGCTAATATTGTCAGCC
AGTCGTCACCGACTACTTTGCGCAAGATCCTTCCCCTTACTTTGAACAGC
CTAGGAATTCTTCATCATCGATTGGGATGTCATGCGCTTGCCGCATGCTA
CTTTGAACATTCTCGTCAGGCATTTATCAAGCTATTTGGGAACCATGAAA
ATAGTGACGCTGACCAGAAGCTGTGCCACTTAACAACACTCAGCAATGTT
CATAACACACATGTTGCTTATAACTTGGCTCTCCAATACATGCAGCTAAG
TGATTTTTCGAAGGCATTGGACTGCTTTATGTTCTGTGCGCGAAGTGATT
ACACTTACGCAAGCAACTCTCCTCTGTTGTGGATTCGAATCGCCGAATGT
TGTGTTGGCATCGAGAGAAATAGCAATCGTTCACTTCTTGTTGTTGAAGG
TCAAGGGAGAGGCCGCCGTTTTGTCATGCGGGCTGCTGAGAGGGATGAAG
GACTCAACATGGAATATGCGGCCACATGTGCCAGGGCAGCGATTATGATA
TTAGATCGTCAGAGAGTGAAAGCACAGGACACTCGAGAATCACCCTCGAA
ATCGAAACGAAACTCCGGATCTATGAATTCATCTTTCAATGGGGAGAATG
GTCATGATCACACATCTTCATCGGGTGGTGCTGATGAAGACATACATTTG
CGCAGCGCTGCACTTAACCTGCTGGCATACTCCTCTCTTTCATTTGACCC
CAAATCTGTTATCAAGGCTTGCAAAGAAATCCAAAAACTCTTTCCGAACG
GAAGCAATGACAGAACTCTTCTCAGTCGATTGTATGCGGCTGAAGCGTAC
TGTATGTTGAACAGACCAAGAGAGGCCGAGAAGCAATTGAATCCTATGGT
GAATCCTAGCATTCAGGATTCTGCTGCCAGGGAAGCCGCATTCATAAACT
GGGCTTTAACTCACGCATGTAACGGTGATGTTGGAGCAGCTTCTAGAGCA
GCAAGGTATGCTCTCGAGAAATCTAGCACTATATCCACAAATCAGCAACG
ATACCGCTCCTTACGAAGGGATACCATTTTCGCTGCCTCGTATATTTTTC
TCCGCAATGGGGAAACTGACAACGCTCGTAGATGTCTCCGATCCCTGCTT
GGGTCAACGTAA