Gvermi6939.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6939.t1
Unique Name	Gvermi6939.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	248

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:700494..701237 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704191.1
Preferred name	RRF1
PFAMs	RRF
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00078,RC02809,RC02889
KEGG ko	ko:K02838,ko:K03283,ko:K13811
KEGG TC	1.A.33.1
KEGG Reaction	R00509,R00529,R04928,R04929
KEGG Pathway	ko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00230,map00261,map00450,map00920,map01100,map01120,map01130,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG Module	M00176,M00353,M00355
GOs	GO:0000003,GO:0002181,GO:0002184,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007275,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0032544,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0042742,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045087,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0061458,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098542,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Evalue	6.79e-64
EggNOG OGs	COG0233@1\|root,KOG4759@2759\|Eukaryota
EC	2.7.1.25,2.7.7.4
Description	ribosomal large subunit binding
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6939	Gvermi6939	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 700494..701237 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6939.t1.stop1	Gvermi6939.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 700494..700496 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6939.t1.CDS1	Gvermi6939.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 700494..701237 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6939.t1.exon1	Gvermi6939.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 700494..701237 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6939.t1.start1	Gvermi6939.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 701235..701237 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6939.t1	Gvermi6939.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 700494..701237 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:700494..701237-
coding sequence from alignment at ScGOVlb_24229:700494..701237-

mRNA sequence

>Gvermi6939.t1 ID=Gvermi6939.t1|Name=Gvermi6939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=248bp
MQRNVNYRQTAIAQMAFCFTGLPLYCSPRCSPASDAVSRQPAFRLPHPNR
SRARIFQIRCELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILD
RVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVG
ITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDS
LKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV*

spliced messenger RNA

>Gvermi6939.t1 ID=Gvermi6939.t1|Name=Gvermi6939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_24229:700494..701237- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACGAAACGTCAACTACAGACAAACAGCGATTGCACAAATGGCCTT
TTGCTTCACTGGTCTCCCGCTTTACTGCTCCCCTCGCTGTAGCCCCGCTT
CTGATGCAGTTTCTCGTCAGCCCGCCTTTCGACTCCCGCACCCAAACCGC
TCCAGGGCTCGCATTTTTCAAATTCGATGCGAACTCACCAAGAATGAAAC
AGCGGCCAAGTCGGAGGAGCGCATGAAGAAGACCATCGATTCTCTCCAGT
CAAACTTCAATACCGTTCGAACAGGACGCGCAAACCCGTCCATCCTAGAC
CGCGTTATGGTTGCATACTATGGGGCTGAAACTCCACTTAATCAGCTAGC
AAGTGTCTCCATCAGTGGCACGTCTACATTAGTAGTCGAGCCGTACGATA
AGAACTCAGTGTCTGACGTCGAGCGAGCCATTCTTCAAAGTGATGTTGGA
ATCACTCCAAACAGTGACGGTTCTAAGATTAGACTGGCCGTTCCCCAACT
CACGGAGGACAGAAGAAAGCAACTCGCAAAACAGGTTAAAGGGATTACAG
AGGAAGCCCGAGTGGCAATCCGCAATATCAGAAGAGACGCCGTTGATTCA
CTGAAGAAGCTGGAGAAAAAAGGCGAGCTCGGCAAGGATGAGAGCATGAC
TATGCAAGACGACGTTCAGAAGCTAACAGACAAATACATCAAGCAGGTAG
ACCAAATGCTTAAGAGCAAGGAGGCTGACATCATGAAAGTGTGA

protein sequence of Gvermi6939.t1

>Gvermi6939.t1 ID=Gvermi6939.t1|Name=Gvermi6939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=248bp
MQRNVNYRQTAIAQMAFCFTGLPLYCSPRCSPASDAVSRQPAFRLPHPNR
SRARIFQIRCELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILD
RVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVG
ITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDS
LKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV*

mRNA from alignment at ScGOVlb_24229:700494..701237-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6939.t1 ID=Gvermi6939.t1|Name=Gvermi6939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_24229:700494..701237- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACGAAACGTCAACTACAGACAAACAGCGATTGCACAAATGGCCTT
TTGCTTCACTGGTCTCCCGCTTTACTGCTCCCCTCGCTGTAGCCCCGCTT
CTGATGCAGTTTCTCGTCAGCCCGCCTTTCGACTCCCGCACCCAAACCGC
TCCAGGGCTCGCATTTTTCAAATTCGATGCGAACTCACCAAGAATGAAAC
AGCGGCCAAGTCGGAGGAGCGCATGAAGAAGACCATCGATTCTCTCCAGT
CAAACTTCAATACCGTTCGAACAGGACGCGCAAACCCGTCCATCCTAGAC
CGCGTTATGGTTGCATACTATGGGGCTGAAACTCCACTTAATCAGCTAGC
AAGTGTCTCCATCAGTGGCACGTCTACATTAGTAGTCGAGCCGTACGATA
AGAACTCAGTGTCTGACGTCGAGCGAGCCATTCTTCAAAGTGATGTTGGA
ATCACTCCAAACAGTGACGGTTCTAAGATTAGACTGGCCGTTCCCCAACT
CACGGAGGACAGAAGAAAGCAACTCGCAAAACAGGTTAAAGGGATTACAG
AGGAAGCCCGAGTGGCAATCCGCAATATCAGAAGAGACGCCGTTGATTCA
CTGAAGAAGCTGGAGAAAAAAGGCGAGCTCGGCAAGGATGAGAGCATGAC
TATGCAAGACGACGTTCAGAAGCTAACAGACAAATACATCAAGCAGGTAG
ACCAAATGCTTAAGAGCAAGGAGGCTGACATCATGAAAGTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:700494..701237-

>Gvermi6939.t1 ID=Gvermi6939.t1|Name=Gvermi6939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=744bp|location=Sequence derived from alignment at ScGOVlb_24229:700494..701237- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACGAAACGTCAACTACAGACAAACAGCGATTGCACAAATGGCCTT
TTGCTTCACTGGTCTCCCGCTTTACTGCTCCCCTCGCTGTAGCCCCGCTT
CTGATGCAGTTTCTCGTCAGCCCGCCTTTCGACTCCCGCACCCAAACCGC
TCCAGGGCTCGCATTTTTCAAATTCGATGCGAACTCACCAAGAATGAAAC
AGCGGCCAAGTCGGAGGAGCGCATGAAGAAGACCATCGATTCTCTCCAGT
CAAACTTCAATACCGTTCGAACAGGACGCGCAAACCCGTCCATCCTAGAC
CGCGTTATGGTTGCATACTATGGGGCTGAAACTCCACTTAATCAGCTAGC
AAGTGTCTCCATCAGTGGCACGTCTACATTAGTAGTCGAGCCGTACGATA
AGAACTCAGTGTCTGACGTCGAGCGAGCCATTCTTCAAAGTGATGTTGGA
ATCACTCCAAACAGTGACGGTTCTAAGATTAGACTGGCCGTTCCCCAACT
CACGGAGGACAGAAGAAAGCAACTCGCAAAACAGGTTAAAGGGATTACAG
AGGAAGCCCGAGTGGCAATCCGCAATATCAGAAGAGACGCCGTTGATTCA
CTGAAGAAGCTGGAGAAAAAAGGCGAGCTCGGCAAGGATGAGAGCATGAC
TATGCAAGACGACGTTCAGAAGCTAACAGACAAATACATCAAGCAGGTAG
ACCAAATGCTTAAGAGCAAGGAGGCTGACATCATGAAAGTGTGA