Gvermi6939.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6939.t1
Unique NameGvermi6939.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length248
Homology
BLAST of Gvermi6939.t1 vs. uniprot
Match: A0A2V3INL6_9FLOR (Ribosome-recycling factor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INL6_9FLOR)

HSP 1 Score: 290 bits (742), Expect = 3.360e-96
Identity = 161/232 (69.40%), Postives = 182/232 (78.45%), Query Frame = 0
Query:   16 AFCFTGLPLYCSPRCSPASDAVSRQPAFRLPHPNRSRARIFQIRCELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            AFC T +P     R       +SR  + RL   +RSR     IR ELT+NETA KSEERM KTIDS+Q+NFNTVRTGRA+PSILDRV+V+YYGA+TPLNQLASVS+SGTSTLVVEPYDKN++ DVE+AI+QSDVGITPNSDGSKIRLAVPQLTE+RRK+LAKQVK I EE R+AIRNIRRDAVD+LKK EKK  LGKDESMTMQD+VQK               KEADIMKV
Sbjct:    5 AFCVTSVPCGLGLRYDIVRHGISRPQSLRLSRSHRSRIYTPTIRSELTQNETAKKSEERMNKTIDSVQTNFNTVRTGRASPSILDRVLVSYYGADTPLNQLASVSVSGTSTLVVEPYDKNAIQDVEKAIMQSDVGITPNSDGSKIRLAVPQLTEERRKELAKQVKAIAEEGRIAIRNIRRDAVDALKKQEKKNNLGKDESMTMQDEVQKXXXXXXXXXXXXXXQKEADIMKV 236          
BLAST of Gvermi6939.t1 vs. uniprot
Match: R7QEJ9_CHOCR (Ribosome-recycling factor RRF, Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEJ9_CHOCR)

HSP 1 Score: 268 bits (684), Expect = 3.030e-87
Identity = 140/204 (68.63%), Postives = 177/204 (86.76%), Query Frame = 0
Query:   44 RLPHPNRSRARIFQIRCELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            RL H + S++    +RCELT+NET  ++ +RM KT+DS+QS F+TVRTGRA+ S++DRVMV+YY  ETPLNQLASVS+SGTST++VEPYDK+ + DVER I++SDVGITPN+DGS IRL+VP LTEDRRK+L KQVKG+ EE RVA+RNIRRDAVDSLKKLEKK ELGKDES T+Q +VQK+TDK++K++D++LK KEADI+KV
Sbjct:   44 RLQH-SPSQSNPSSVRCELTQNETGKETTDRMGKTLDSVQSAFSTVRTGRASTSMVDRVMVSYYDVETPLNQLASVSLSGTSTILVEPYDKSCMGDVERGIMESDVGITPNNDGSCIRLSVPPLTEDRRKELVKQVKGLAEEGRVALRNIRRDAVDSLKKLEKKKELGKDESKTLQSEVQKITDKHVKRIDELLKQKEADILKV 246          
BLAST of Gvermi6939.t1 vs. uniprot
Match: Q7XY97_GRIJA (Ribosome recycling factor n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY97_GRIJA)

HSP 1 Score: 266 bits (681), Expect = 5.060e-87
Identity = 134/188 (71.28%), Postives = 167/188 (88.83%), Query Frame = 0
Query:   60 CELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            CELT+N+TA KSE RM+KTIDS++S FN+VRTGRA+PS+LDR+ V YYGA+TPLN LA+VS+SGTSTLVVEPYDK+ +SD+ER++++SD+G+TPNSDGS IRL++PQLT++RR QL KQVK + E+ RVAIRNIRRDAVDS+KKLEKK ELGKDES T+QD VQKLTDKY+K ++ + K KE DIMKV
Sbjct:   43 CELTENDTAEKSEARMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSGTSTLVVEPYDKSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRVAIRNIRRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEEDIMKV 230          
BLAST of Gvermi6939.t1 vs. uniprot
Match: A0A7S1TJD3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJD3_9RHOD)

HSP 1 Score: 223 bits (567), Expect = 6.050e-70
Identity = 115/219 (52.51%), Postives = 162/219 (73.97%), Query Frame = 0
Query:   29 RCSPASDAVSRQPAFRLPHPNRSRARIFQIRCELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            RC   + AV  +PA +              R  ++  + A  SEERMKK+I+++ ++FNT+RTGRANP+ILDRVMV+YYGAETPL QLASVS   ++ + ++ +DK+ + D+ERAI++SD+G+TP++DG+ IRL +P LT+DRRK++ KQ+K + EE RVA+RNIRRD VD +K LEK  ++GKDES   QD++QKLTDKY+K VD +LK KE ++MKV
Sbjct:   11 RCGGRAAAVRVEPAAK--------------RWRMSVKDIAKGSEERMKKSIEAVGTSFNTIRTGRANPAILDRVMVSYYGAETPLKQLASVSTPSSTVIAIDAFDKSCIKDIERAIMESDLGLTPSNDGNVIRLNIPALTQDRRKEMVKQLKQLAEEGRVALRNIRRDGVDQIKALEKSSDIGKDESKIAQDEIQKLTDKYVKTVDSLLKDKEGEVMKV 215          
BLAST of Gvermi6939.t1 vs. uniprot
Match: A0A7S0BL39_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL39_9RHOD)

HSP 1 Score: 217 bits (552), Expect = 1.470e-67
Identity = 106/190 (55.79%), Postives = 150/190 (78.95%), Query Frame = 0
Query:   58 IRCELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            +R  + ++E   ++E+RMKKT+++++SNFNTVRTGRAN S+LDRV+V YY  +TPLNQLAS+SI  ++T+ ++PYDK+ ++D+ER+++++D+G+ PNSDGS IRL VP LT++RRK+  K VK I E  RVA+RNIRRDA++  KK EK G++ KDES T QD  QKLTDKY+K +D +   KE DI+KV
Sbjct:   34 VRVFMAQDERLKRAEDRMKKTVETVKSNFNTVRTGRANASMLDRVVVPYYEVDTPLNQLASISIPSSTTIQIDPYDKSVLADIERSLMEADLGMNPNSDGSVIRLIVPPLTQERRKEFVKSVKAIAEHGRVAVRNIRRDAIEKYKKAEKDGDMSKDESKTNQDGAQKLTDKYVKMIDTLASEKEKDILKV 223          
BLAST of Gvermi6939.t1 vs. uniprot
Match: A0A5J4Z4W6_PORPP (Ribosome-recycling factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4W6_PORPP)

HSP 1 Score: 209 bits (531), Expect = 3.660e-64
Identity = 105/194 (54.12%), Postives = 149/194 (76.80%), Query Frame = 0
Query:   54 RIFQIRCELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            R+  ++  ++ ++  A +EERM K++D++  +FNT+RTGRANP++LDRV+V+Y+G ETPL QLASVS   ++ L VE +D + V DVERAI++SD+G+TP +DGS +RL VP LT++RRK+  KQ+K + E+ RVA+RNIRRD V+ +KK+EK  E+GKDES   QD +QKLTDKY+K VD  L  KE ++MKV
Sbjct:   46 RVCAVQPRMSVDDLVANAEERMSKSMDAVGQSFNTIRTGRANPAVLDRVVVSYWGVETPLKQLASVSTPSSTVLQVEVFDPSCVKDVERAIMESDLGMTPQTDGSTLRLNVPALTQERRKEFVKQLKQLAEDGRVAVRNIRRDIVEKIKKMEKDSEIGKDESKDGQDRIQKLTDKYVKMVDNALAEKEKEVMKV 239          
BLAST of Gvermi6939.t1 vs. uniprot
Match: M2VWP6_GALSU (Ribosome recycling factor (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWP6_GALSU)

HSP 1 Score: 207 bits (528), Expect = 1.380e-63
Identity = 105/185 (56.76%), Postives = 141/185 (76.22%), Query Frame = 0
Query:   61 ELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIM 245
            +++ +E   ++EERM         N +T+RTGRANP++LDR+ V+YYG ETPL  LAS++ S  +TL +EPYD++ V D+E+AI +SD+ +TPN+DG  IRL +P LTE+RRKQL K VK +TEE RVA+RNIRRD +D LKKLEK GELGKDE  ++QDD+QKLTDKYIK +++  K KE D+M
Sbjct:   62 KVSSSEAQKEAEERMXXXXXXXXXNLSTLRTGRANPALLDRLTVSYYGTETPLKSLASITASSATTLTIEPYDRSYVKDIEKAIAESDLALTPNNDGKSIRLELPPLTEERRKQLIKSVKQLTEEGRVAVRNIRRDIMDKLKKLEKDGELGKDEMKSIQDDIQKLTDKYIKLMEEKAKEKEKDLM 246          
BLAST of Gvermi6939.t1 vs. uniprot
Match: A0A7S2S100_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S100_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.150e-63
Identity = 104/187 (55.61%), Postives = 147/187 (78.61%), Query Frame = 0
Query:   63 TKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQ--DDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            T +E  +++E +MKK+++S+Q+N NT+RTGRANPS+LDRV V YYG  TPLNQ+AS+S+S  ++L+V+PYDK+S+ DVE+AI++SD+GI P++DG KIRL +P LTE+RRK+L K  K + E+ +VA+RN+RRDAVDS+KKL K  + G  E       D +QKLTDKY+K+VD+++  KE DI KV
Sbjct:   54 TLDEVESEAEVKMKKSVESVQTNLNTLRTGRANPSLLDRVQVDYYGTPTPLNQVASISVSSGTSLIVDPYDKSSLGDVEKAIMESDIGIVPSNDGEKIRLNIPSLTEERRKELMKTAKSLGEDGKVALRNVRRDAVDSIKKLAKDKDAGVSEDSVKDSTDSIQKLTDKYVKEVDEVVAGKEKDISKV 240          
BLAST of Gvermi6939.t1 vs. uniprot
Match: A0A7S2JZ54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ54_9STRA)

HSP 1 Score: 206 bits (525), Expect = 2.160e-63
Identity = 100/183 (54.64%), Postives = 143/183 (78.14%), Query Frame = 0
Query:   65 NETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            +E A + EERM+K+ DS+  N  T+ TGRANP++LDR+   YYGA TP+NQ+AS+S+   S L ++PYDK+S+SD+E+AI+ SD+G+TP +DGS IR+ +P LTE+RRK+L K+ KGI EE +VA+RN+RRD VD +KKLEK   +G+D+S   QDD+QK+TDKY+K +D+++  KE D+ KV
Sbjct:   47 DEIALEIEERMQKSCDSVVRNLQTISTGRANPAMLDRIQADYYGAPTPINQMASISVPSASQLQIDPYDKSSLSDIEKAIIISDLGMTPQNDGSVIRINIPALTEERRKELLKKCKGIGEEGKVAVRNVRRDGVDKIKKLEKASTIGEDQSKEGQDDIQKMTDKYVKDIDEIVAKKEKDVSKV 229          
BLAST of Gvermi6939.t1 vs. uniprot
Match: A0A7S4EEJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEJ6_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.960e-63
Identity = 101/175 (57.71%), Postives = 141/175 (80.57%), Query Frame = 0
Query:   73 ERMKKTIDSLQSNFNTVRTGRANPSILDRVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVGITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDSLKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV 247
            +RM+K+I+S+  N NT+RTGRA+P+ILDRV   YYG ETP+NQ+AS+S+     L VEP+DK+ + DVERAI++SDVG+TP +DG+ IRL +P LTEDRRK++ KQ K I EE +VA+RNIRR AVDS+KKLEK  ++ +DES + QDD+QK+TD+ +K++D +++ KE D+MKV
Sbjct:   54 DRMEKSIESVMQNMNTIRTGRASPAILDRVKCDYYGTETPINQMASISVPSAQQLTVEPFDKSMLGDVERAIMESDVGLTPMNDGTVIRLNIPSLTEDRRKEMMKQCKAIGEEGKVAVRNIRRKAVDSIKKLEKDSDISEDESKSSQDDIQKMTDEKVKEIDGIVEKKENDVMKV 228          
The following BLAST results are available for this feature:
BLAST of Gvermi6939.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INL6_9FLOR3.360e-9669.40Ribosome-recycling factor n=1 Tax=Gracilariopsis c... [more]
R7QEJ9_CHOCR3.030e-8768.63Ribosome-recycling factor RRF, Rhodoplastic n=1 Ta... [more]
Q7XY97_GRIJA5.060e-8771.28Ribosome recycling factor n=1 Tax=Griffithsia japo... [more]
A0A7S1TJD3_9RHOD6.050e-7052.51Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S0BL39_9RHOD1.470e-6755.79Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z4W6_PORPP3.660e-6454.12Ribosome-recycling factor n=1 Tax=Porphyridium pur... [more]
M2VWP6_GALSU1.380e-6356.76Ribosome recycling factor (Plastid) n=1 Tax=Galdie... [more]
A0A7S2S100_9STRA2.150e-6355.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2JZ54_9STRA2.160e-6354.64Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4EEJ6_9STRA2.960e-6357.71Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 82..245
e-value: 4.4E-61
score: 205.5
IPR002661Ribosome recycling factorTIGRFAMTIGR00496TIGR00496coord: 72..247
e-value: 9.0E-71
score: 235.1
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 66..246
IPR002661Ribosome recycling factorHAMAPMF_00040RRFcoord: 65..247
score: 26.871796
IPR002661Ribosome recycling factorCDDcd00520RRFcoord: 69..245
e-value: 5.71178E-80
score: 236.388
IPR036191RRF superfamilyGENE3D1.10.132.20coord: 72..244
e-value: 2.8E-68
score: 230.8
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 66..247
NoneNo IPR availableGENE3D3.30.1360.40coord: 93..167
e-value: 2.8E-68
score: 230.8
NoneNo IPR availablePANTHERPTHR20982:SF3MITOCHONDRIAL RIBOSOME RECYCLING FACTORcoord: 66..246
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..247

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:700494..701237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6939.t1Gvermi6939.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 700494..701237 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6939.t1 ID=Gvermi6939.t1|Name=Gvermi6939.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=248bp
MQRNVNYRQTAIAQMAFCFTGLPLYCSPRCSPASDAVSRQPAFRLPHPNR
SRARIFQIRCELTKNETAAKSEERMKKTIDSLQSNFNTVRTGRANPSILD
RVMVAYYGAETPLNQLASVSISGTSTLVVEPYDKNSVSDVERAILQSDVG
ITPNSDGSKIRLAVPQLTEDRRKQLAKQVKGITEEARVAIRNIRRDAVDS
LKKLEKKGELGKDESMTMQDDVQKLTDKYIKQVDQMLKSKEADIMKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac
IPR036191RRF_sf