Gvermi6793.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6793.t1
Unique Name	Gvermi6793.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2318783..2320462 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D8LG51
Preferred name	GTPBP3
PFAMs	MMR_HSR1,MnmE_helical,TrmE_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00053,RC00209,RC00870
KEGG ko	ko:K03650,ko:K10769
KEGG Reaction	R08701
GOs	GO:0000166,GO:0000959,GO:0000963,GO:0001882,GO:0001883,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009790,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0070525,GO:0070899,GO:0070900,GO:0071704,GO:0090304,GO:0090646,GO:0097159,GO:0097367,GO:0140053,GO:1900864,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue	1.69e-129
EggNOG OGs	COG0486@1\|root,KOG1191@2759\|Eukaryota
Description	GTP binding
COG category	D
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6793	Gvermi6793	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2318783..2320462 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6793.t1.stop1	Gvermi6793.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2318783..2318785 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6793.t1.CDS1	Gvermi6793.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2318783..2320462 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6793.t1.exon1	Gvermi6793.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2318783..2320462 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6793.t1.start1	Gvermi6793.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2320460..2320462 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6793.t1	Gvermi6793.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2318783..2320462 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2318783..2320462-
coding sequence from alignment at ScGOVlb_88:2318783..2320462-

mRNA sequence

>Gvermi6793.t1 ID=Gvermi6793.t1|Name=Gvermi6793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=560bp
MALLFARSVAFPRSRGVVLAALRGNFGCGWRRRTPATHRPIRIAFLNIRA
VSTRDHAPQVAQYSSPLSVPHSEFQEDTIFALSSGAGVTAGVGVIRISGP
HATACLRKLLRSHSHSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPR
SFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVVRPAERGEFTRRAFE
NGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCL
AHVEAVIDFGDDVEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGAR
VAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTV
SDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAIRAL
SGQLSLRNSDSVSNNLVCVLNKVDLVDEPAKEVLDGSFTIFRTSLLQNEG
LTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAV
SALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDV
IFKEFCIGK*

spliced messenger RNA

>Gvermi6793.t1 ID=Gvermi6793.t1|Name=Gvermi6793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at ScGOVlb_88:2318783..2320462- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTACTATTTGCGCGAAGTGTTGCGTTTCCGCGCTCACGGGGTGT
TGTACTCGCTGCCCTTCGCGGAAACTTTGGCTGTGGATGGCGACGACGAA
CCCCAGCAACTCATCGACCGATTCGCATAGCTTTCCTCAACATTCGCGCT
GTTTCAACGAGAGACCATGCGCCACAAGTTGCTCAGTACTCGTCTCCACT
CAGCGTTCCGCATTCTGAGTTTCAGGAAGATACTATTTTTGCCTTGTCTT
CTGGCGCGGGCGTGACAGCAGGTGTGGGGGTCATTCGCATATCTGGGCCG
CATGCCACAGCCTGCCTTCGGAAACTGCTCCGCTCTCATTCACACTCGGC
AGTCCCACAGCCACGATACGCCTCATTACGCAGATTGCATCATCCTACAT
CATCTGACCTACTTGATGAGGCACTAGTTCTCTATTTTCCAGGTCCGAGA
AGCTTTACTGGCGAAGATGTTGTTGAGCTGCATGTACACGGCTCAAGAGC
TGTTATCAGCGCCGTAATGGATGCCATTGCCGATTGCGCATCTTCCCAAG
TTGTGGTGCGACCCGCTGAGCGTGGTGAGTTTACGCGAAGAGCGTTTGAA
AATGGGCAGATGGACCTCACCGCCGTGGAGGGTCTTGCAGACCTTATCGC
CGCGGAAACTGCGATGCAACGGAAACAAGCTCTTCGCCAATTCACCGGCC
ATCTCAAAGAAACGCTTGAATCGTGGCGGTCTGACATCAAGACCTGTCTA
GCTCATGTTGAGGCAGTGATCGACTTCGGCGATGACGTAGAGGACCAAGT
TTTTGAACAAATTGTTCCTCGCATTCGGGAGCTTCGCAATCGAATCCGGT
CGCACCTTCGAGATGCTCACAGAGGGGAGATAATTCGGGGGGGCGCTCGT
GTCGCTATTGTTGGACAACCAAACGCAGGCAAGAGTACGTTGCTAAATGC
GCTTGCAAAACGACCTGCGGCCATTGTTTCTCCTCATGCAGGCACTACTC
GAGACGTTGTTGAAGTTCAACTGGATCTTAACGGCCTCGCCGTCACCGTG
AGTGATACTGCAGGACTACGAGATTCCACCAACGACCCAATCGAAATTGA
GGGGATTCGTAGAGCAAGAGATGCTGCTTCTAGAGCAGATGTGACTGTTT
TGGTGCATGATGTCACGTCTGGAGACTTAAATACAGCAATACGAGCATTG
TCGGGGCAACTATCGTTAAGGAACTCCGACTCAGTTTCAAACAACTTGGT
GTGCGTCTTGAACAAGGTAGACCTCGTCGATGAACCTGCGAAGGAGGTGT
TAGATGGCAGTTTTACAATTTTCCGAACCAGCCTTCTACAAAACGAAGGA
CTCACGGAATTGGTGAACCACTTGGAGTCGTCGATTCGAGAAATATGTGA
AGGAGGGGCCAAAAAGGACTCCAGTGGGAAAGAATCATCTGCCAACCCCG
CACCGATAATAACCCGAACACGACATAGATACCACATGAAAAATGCGGTT
TCAGCGCTTGACTCTTTCTTGGATGGTAGAAGTGGCGAAGACCCTTCTCT
CTACCTACCGATGGATCTTGCGGCCGAAGATCTGCGAATTGCAGCCAAGG
AGCTTGGCGCCATTACTGGAAAAATTGATTGCGAAGAAGTGTTGGACGTA
ATCTTCAAAGAATTTTGCATAGGAAAGTGA

protein sequence of Gvermi6793.t1

>Gvermi6793.t1 ID=Gvermi6793.t1|Name=Gvermi6793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=560bp
MALLFARSVAFPRSRGVVLAALRGNFGCGWRRRTPATHRPIRIAFLNIRA
VSTRDHAPQVAQYSSPLSVPHSEFQEDTIFALSSGAGVTAGVGVIRISGP
HATACLRKLLRSHSHSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPR
SFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVVRPAERGEFTRRAFE
NGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCL
AHVEAVIDFGDDVEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGAR
VAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTV
SDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAIRAL
SGQLSLRNSDSVSNNLVCVLNKVDLVDEPAKEVLDGSFTIFRTSLLQNEG
LTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAV
SALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDV
IFKEFCIGK*

mRNA from alignment at ScGOVlb_88:2318783..2320462-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6793.t1 ID=Gvermi6793.t1|Name=Gvermi6793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at ScGOVlb_88:2318783..2320462- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTACTATTTGCGCGAAGTGTTGCGTTTCCGCGCTCACGGGGTGT
TGTACTCGCTGCCCTTCGCGGAAACTTTGGCTGTGGATGGCGACGACGAA
CCCCAGCAACTCATCGACCGATTCGCATAGCTTTCCTCAACATTCGCGCT
GTTTCAACGAGAGACCATGCGCCACAAGTTGCTCAGTACTCGTCTCCACT
CAGCGTTCCGCATTCTGAGTTTCAGGAAGATACTATTTTTGCCTTGTCTT
CTGGCGCGGGCGTGACAGCAGGTGTGGGGGTCATTCGCATATCTGGGCCG
CATGCCACAGCCTGCCTTCGGAAACTGCTCCGCTCTCATTCACACTCGGC
AGTCCCACAGCCACGATACGCCTCATTACGCAGATTGCATCATCCTACAT
CATCTGACCTACTTGATGAGGCACTAGTTCTCTATTTTCCAGGTCCGAGA
AGCTTTACTGGCGAAGATGTTGTTGAGCTGCATGTACACGGCTCAAGAGC
TGTTATCAGCGCCGTAATGGATGCCATTGCCGATTGCGCATCTTCCCAAG
TTGTGGTGCGACCCGCTGAGCGTGGTGAGTTTACGCGAAGAGCGTTTGAA
AATGGGCAGATGGACCTCACCGCCGTGGAGGGTCTTGCAGACCTTATCGC
CGCGGAAACTGCGATGCAACGGAAACAAGCTCTTCGCCAATTCACCGGCC
ATCTCAAAGAAACGCTTGAATCGTGGCGGTCTGACATCAAGACCTGTCTA
GCTCATGTTGAGGCAGTGATCGACTTCGGCGATGACGTAGAGGACCAAGT
TTTTGAACAAATTGTTCCTCGCATTCGGGAGCTTCGCAATCGAATCCGGT
CGCACCTTCGAGATGCTCACAGAGGGGAGATAATTCGGGGGGGCGCTCGT
GTCGCTATTGTTGGACAACCAAACGCAGGCAAGAGTACGTTGCTAAATGC
GCTTGCAAAACGACCTGCGGCCATTGTTTCTCCTCATGCAGGCACTACTC
GAGACGTTGTTGAAGTTCAACTGGATCTTAACGGCCTCGCCGTCACCGTG
AGTGATACTGCAGGACTACGAGATTCCACCAACGACCCAATCGAAATTGA
GGGGATTCGTAGAGCAAGAGATGCTGCTTCTAGAGCAGATGTGACTGTTT
TGGTGCATGATGTCACGTCTGGAGACTTAAATACAGCAATACGAGCATTG
TCGGGGCAACTATCGTTAAGGAACTCCGACTCAGTTTCAAACAACTTGGT
GTGCGTCTTGAACAAGGTAGACCTCGTCGATGAACCTGCGAAGGAGGTGT
TAGATGGCAGTTTTACAATTTTCCGAACCAGCCTTCTACAAAACGAAGGA
CTCACGGAATTGGTGAACCACTTGGAGTCGTCGATTCGAGAAATATGTGA
AGGAGGGGCCAAAAAGGACTCCAGTGGGAAAGAATCATCTGCCAACCCCG
CACCGATAATAACCCGAACACGACATAGATACCACATGAAAAATGCGGTT
TCAGCGCTTGACTCTTTCTTGGATGGTAGAAGTGGCGAAGACCCTTCTCT
CTACCTACCGATGGATCTTGCGGCCGAAGATCTGCGAATTGCAGCCAAGG
AGCTTGGCGCCATTACTGGAAAAATTGATTGCGAAGAAGTGTTGGACGTA
ATCTTCAAAGAATTTTGCATAGGAAAGTGA

Coding sequence (CDS) from alignment at ScGOVlb_88:2318783..2320462-

>Gvermi6793.t1 ID=Gvermi6793.t1|Name=Gvermi6793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1680bp|location=Sequence derived from alignment at ScGOVlb_88:2318783..2320462- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTACTATTTGCGCGAAGTGTTGCGTTTCCGCGCTCACGGGGTGT
TGTACTCGCTGCCCTTCGCGGAAACTTTGGCTGTGGATGGCGACGACGAA
CCCCAGCAACTCATCGACCGATTCGCATAGCTTTCCTCAACATTCGCGCT
GTTTCAACGAGAGACCATGCGCCACAAGTTGCTCAGTACTCGTCTCCACT
CAGCGTTCCGCATTCTGAGTTTCAGGAAGATACTATTTTTGCCTTGTCTT
CTGGCGCGGGCGTGACAGCAGGTGTGGGGGTCATTCGCATATCTGGGCCG
CATGCCACAGCCTGCCTTCGGAAACTGCTCCGCTCTCATTCACACTCGGC
AGTCCCACAGCCACGATACGCCTCATTACGCAGATTGCATCATCCTACAT
CATCTGACCTACTTGATGAGGCACTAGTTCTCTATTTTCCAGGTCCGAGA
AGCTTTACTGGCGAAGATGTTGTTGAGCTGCATGTACACGGCTCAAGAGC
TGTTATCAGCGCCGTAATGGATGCCATTGCCGATTGCGCATCTTCCCAAG
TTGTGGTGCGACCCGCTGAGCGTGGTGAGTTTACGCGAAGAGCGTTTGAA
AATGGGCAGATGGACCTCACCGCCGTGGAGGGTCTTGCAGACCTTATCGC
CGCGGAAACTGCGATGCAACGGAAACAAGCTCTTCGCCAATTCACCGGCC
ATCTCAAAGAAACGCTTGAATCGTGGCGGTCTGACATCAAGACCTGTCTA
GCTCATGTTGAGGCAGTGATCGACTTCGGCGATGACGTAGAGGACCAAGT
TTTTGAACAAATTGTTCCTCGCATTCGGGAGCTTCGCAATCGAATCCGGT
CGCACCTTCGAGATGCTCACAGAGGGGAGATAATTCGGGGGGGCGCTCGT
GTCGCTATTGTTGGACAACCAAACGCAGGCAAGAGTACGTTGCTAAATGC
GCTTGCAAAACGACCTGCGGCCATTGTTTCTCCTCATGCAGGCACTACTC
GAGACGTTGTTGAAGTTCAACTGGATCTTAACGGCCTCGCCGTCACCGTG
AGTGATACTGCAGGACTACGAGATTCCACCAACGACCCAATCGAAATTGA
GGGGATTCGTAGAGCAAGAGATGCTGCTTCTAGAGCAGATGTGACTGTTT
TGGTGCATGATGTCACGTCTGGAGACTTAAATACAGCAATACGAGCATTG
TCGGGGCAACTATCGTTAAGGAACTCCGACTCAGTTTCAAACAACTTGGT
GTGCGTCTTGAACAAGGTAGACCTCGTCGATGAACCTGCGAAGGAGGTGT
TAGATGGCAGTTTTACAATTTTCCGAACCAGCCTTCTACAAAACGAAGGA
CTCACGGAATTGGTGAACCACTTGGAGTCGTCGATTCGAGAAATATGTGA
AGGAGGGGCCAAAAAGGACTCCAGTGGGAAAGAATCATCTGCCAACCCCG
CACCGATAATAACCCGAACACGACATAGATACCACATGAAAAATGCGGTT
TCAGCGCTTGACTCTTTCTTGGATGGTAGAAGTGGCGAAGACCCTTCTCT
CTACCTACCGATGGATCTTGCGGCCGAAGATCTGCGAATTGCAGCCAAGG
AGCTTGGCGCCATTACTGGAAAAATTGATTGCGAAGAAGTGTTGGACGTA
ATCTTCAAAGAATTTTGCATAGGAAAGTGA