Gvermi6793.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6793.t1
Unique NameGvermi6793.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length560
Homology
BLAST of Gvermi6793.t1 vs. uniprot
Match: A0A2V3IXG2_9FLOR (tRNA modification GTPase GTPBP3, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXG2_9FLOR)

HSP 1 Score: 730 bits (1885), Expect = 1.480e-259
Identity = 381/559 (68.16%), Postives = 442/559 (79.07%), Query Frame = 0
Query:   13 RSRGVVLAALRGNFGCGWRRRTPATHRPIRIAFLNIRAVSTRDHAPQVAQYSSP-LSVPHSEFQEDTIFALSSGAGVTAGVGVIRISGPHATACLRKLLRSHSHSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDDVEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAIRALSGQLSLRNS-----DSVSNNLVCVLNKVDLVDEPAKEVLDGSFTIFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPA------PIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            RS    L AL   F   WR  +   H    +  L I AVST+   P   +Y++P +++  + F EDTIFALSSGAGVTAGV VIR+SGPHA  CL K+    +   +P+PRYA+LR+L+HP S +LLDEALVL+FPGP SFTGEDVVEL VHGSRAVISAV++A+ADC     ++RPAERGEFTRRAFENG++DLTAVEGLADLIAAETAMQRKQAL   +GH+KETLE WR++IKTCLAHVEAVIDFGDDV+DQVFE I+PR++ LR +I++HL DAHRGEIIRGGARVAIVG+PNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAV VSDTAGLRDSTNDPIEIEGIRRAR+AA+RAD+TVLVHDVT GDL TA++AL  +LS  +      D     LVCVLNKVDLV+   +   D    +F+TSLL+NEG++ELV+HLES IR +CEGG    SS    + N        PIITR RHR+HMKNAV+ALDSF+ GR+G  PSLYLPMDLAAEDLRIA KELGAITG+ID EEVLDVIF EFCIGK
Sbjct:   15 RSSRSSLGALCKTFSVRWRPFSACAHNNKSVRKLEIHAVSTKHETPTTHEYTNPAVNLTQTVFHEDTIFALSSGAGVTAGVAVIRVSGPHAADCLLKISAPSTRQKLPRPRYAALRKLYHPLSEELLDEALVLFFPGPNSFTGEDVVELQVHGSRAVISAVVNALADCTDPDTMIRPAERGEFTRRAFENGRLDLTAVEGLADLIAAETAMQRKQALWHLSGHVKETLEEWRTEIKTCLAHVEAVIDFGDDVDDQVFEDIIPRVQALRAQIKAHLDDAHRGEIIRGGARVAIVGKPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVVVSDTAGLRDSTNDPIEIEGIRRAREAAARADITVLVHDVTEGDLETALQALPSRLSACDGTQDPDDRADQRLVCVLNKVDLVNTSDQSSKDKDIEVFKTSLLRNEGVSELVDHLESMIRVVCEGGETGGSSENTKNTNTKNTSELMPIITRARHRHHMKNAVAALDSFVQGRTGAIPSLYLPMDLAAEDLRIAGKELGAITGQIDSEEVLDVIFNEFCIGK 573          
BLAST of Gvermi6793.t1 vs. uniprot
Match: R7QKJ8_CHOCR (TrmE-type G domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKJ8_CHOCR)

HSP 1 Score: 473 bits (1218), Expect = 3.050e-161
Identity = 242/385 (62.86%), Postives = 294/385 (76.36%), Query Frame = 0
Query:  181 SSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDDVEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAIRALSGQLSLRNSDSVSN---NLVCVLNKVDLV-DEPAKEVLDGSFTIFRTSLLQNEGLTELVNHLESSIREICEG--GAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            S    VRPAERGEFTRRAFENG+MDLT+VEGLADLI+AETA+QRKQALRQ  G +++ LE WR++IK+CLAH EAVIDFGDDV+D  FE IVPR+ +L  +++ HL D HRGEI+RGGARVAIVGQPNAGKSTLLNALA+RPAAIVSP AGTTRDVVEV LDLNGLAV VSDTAGLR  T DPIEIEG++RAR AAS AD+T+LVHD + G + TAI ++S       +D  +    N++CV NK+DL+ D    +       IF TSL+ N+GL+EL  HLE+ ++   EG  G  KD      +    P+ITR RHR+HM  AV AL  F++GR+G++PSLYLPMD+A E+LRIAAKE+G+ITG I  EEVLDV+F EFCIGK
Sbjct:    3 SDASTVRPAERGEFTRRAFENGRMDLTSVEGLADLISAETALQRKQALRQLGGEMRDLLEGWRAEIKSCLAHAEAVIDFGDDVDDDAFEAIVPRVSDLLMKMKGHLNDGHRGEIVRGGARVAIVGQPNAGKSTLLNALAQRPAAIVSPQAGTTRDVVEVHLDLNGLAVVVSDTAGLRQDTADPIEIEGMKRARQAASNADITILVHDASQGGMETAIESISMDRRGSENDMETGTHANIICVANKIDLIPDSFESKTTVRDIPIFSTSLVNNDGLSELTTHLENLLKVRLEGSGGVGKDGERSSKAQGSIPVITRARHRHHMTLAVEALSVFMEGRTGDNPSLYLPMDIATEELRIAAKEIGSITGIIHVEEVLDVVFSEFCIGK 387          
BLAST of Gvermi6793.t1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA)

HSP 1 Score: 433 bits (1114), Expect = 3.020e-144
Identity = 252/494 (51.01%), Postives = 324/494 (65.59%), Query Frame = 0
Query:   77 DTIFALSSGAGVTAGVGVIRISGPHATACLRKLLRSHS-HSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDD---VEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLR--DSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAIRALSGQLSLRNSDSVSNNLVCVLNKVDL-----VDEPAKEVLDGSFTIFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            DTIFALSSG    AGV VIR+SGP A   L  L+ +   H+ +P+ R A++RRL+ P   DLLDEALVL+ PGPRSFTGED  ELH HGSRAV+  V+ A+         +RPAERGEFT+RA+ NG+MDLT VEGLADLIAA+TA QR+QALRQ  G LK+  ESWR ++  CLAH EAVIDFGDD   V++  +  I P++  L   +R HL D  RGEI+R G RVAI G PNAGKS+LLN LA+RPAAIVSP AGTTRDVV++QLD+ GL V +SDTAGLR  ++  D +E EGIRRAR+A   + +T+ V D +S +   A  A    L   +  +   +++ V NK DL       EP + ++     +++ S    EG+   + HLE  I    +        G+E     AP+ITR RHR+H++  +SAL+  +D      PSL  PMDLAAE+LR A+ ELG ITG +D EE+LDVIF++FCIGK
Sbjct:    4 DTIFALSSGPAGQAGVAVIRVSGPAAGDALHTLITAPGRHAKMPEARRAAVRRLYDPVKGDLLDEALVLWMPGPRSFTGEDTTELHTHGSRAVVGGVLGALGTIPG----LRPAERGEFTQRAYGNGRMDLTEVEGLADLIAADTAEQRRQALRQMGGALKDKYESWREELTKCLAHTEAVIDFGDDEDDVDEGAYAAIRPKVSGLIQELRVHLADNRRGEIVRNGVRVAIAGPPNAGKSSLLNVLAERPAAIVSPIAGTTRDVVQLQLDIAGLPVVLSDTAGLRAAEAAADDVEREGIRRAREAVVDSQLTIFVWD-SSNEAEGA--AALKDLQATDEPADVGSVILVSNKADLGTSATQQEPMQAMVQAGQPVWQLSCKTGEGVEAFLRHLEDEIARRYQ-----TQQGQED----APLITRARHRHHVQACLSALEGSMD------PSL--PMDLAAEELRYASAELGRITGAVDVEELLDVIFRDFCIGK 473          
BLAST of Gvermi6793.t1 vs. uniprot
Match: A0A5J4YTG5_PORPP (tRNA modification GTPase GTPBP3, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTG5_PORPP)

HSP 1 Score: 432 bits (1112), Expect = 2.260e-143
Identity = 255/515 (49.51%), Postives = 332/515 (64.47%), Query Frame = 0
Query:   75 QEDTIFALSSGAGVTAGVGVIRISGPHATACLRKLLRSHSHS------AVPQPRYASLRRLHHPTSS--------------DLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVV--RPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDDVEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAIRALSGQLSLRNSDSVSNNLVCVLNKVDLVDEPAKEVLDGSF--------TIFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            ++DTIFALSSGA   AGV VIRISGPHA   LR LL +   S      A+P+ R ASLR+L    SS              ++LD+ALVL FPGPRSFTGEDVVELHVHG  AV+SAV + +       + +  RPAE+GEFTRRAFEN +MDLT VEGLADLI+AET  QR+ ALRQ  G+L+   +SWR+ I  C+A+VEAVIDFGDDV+D   + + P +R+L   + +H++D  RGEI+R G RVAIVG PNAGKS+LLNALAKRPAAIVS  AGTTRDV+EV LD+ G+AV +SDTAG+R+ T D IE  GI RA+ A + AD+ + V DV   D   ++RA S       SDSV   +V V NK DL  E  ++V   +         +    S     G+    +  E+ +RE+    +    +G E  A+P  +ITR RHR H++NA+ +L +F+     ++    LP+D+A E+LR AA ELG ITG I  E+VLD++F++FCIGK
Sbjct:   11 EQDTIFALSSGASQKAGVAVIRISGPHADVVLRHLLSAQDVSDPDPELALPKARMASLRKLFGGISSTSVDAGAALVGNMKEILDQALVLRFPGPRSFTGEDVVELHVHGGLAVVSAVTNELMRLRMHPLAIPLRPAEKGEFTRRAFENDRMDLTEVEGLADLISAETTEQRRLALRQMGGNLRVLYDSWRAQIIKCMANVEAVIDFGDDVDDDALDAMAPLLRDLEAELSAHVQDNRRGEIVRSGVRVAIVGAPNAGKSSLLNALAKRPAAIVSSVAGTTRDVIEVHLDVAGVAVILSDTAGIREETEDAIEQIGIERAKQALADADLVLHVVDVRQTD-GASMRAFSDT----QSDSVG--VVTVFNKTDLSSEEERQVAAATMQQLGRAKGSELWISCTTGAGMDAFQSAFETRVRELLWNNSS--GTGHECDASPTAVITRARHRVHVENAIHSLRTFIHEFLEQN---NLPLDIATEELRHAASELGQITGTIHTEDVLDIVFQDFCIGK 513          
BLAST of Gvermi6793.t1 vs. uniprot
Match: A0A4D9CTT5_9STRA (TrmE-type G domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTT5_9STRA)

HSP 1 Score: 421 bits (1082), Expect = 1.550e-139
Identity = 245/482 (50.83%), Postives = 305/482 (63.28%), Query Frame = 0
Query:  113 HSHSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAI-ADCASSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDD---VEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTS----------------------GDLNTAIRALSGQLSLRNSDSVSNNLVCVLNKVDLVD-EPAKEVL--------DGSFTIFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            HS +  P PR ASLR+L+ P   + LD+A+VL+ PGPRSFTGED VELH HGSRAV+  V +A+ A     +  VR AE GEFT RAF NG+MDLT VEGLADLIAA+TA QRKQAL+Q  G L++T E WR ++K CLAH EAVIDFGDD   V++  ++ I PR+R L   +R HL D  RGE+IR G RVAIVG PNAGKST+LN LA+RPAAIVSP AGTTRDVVEVQLD+ GL V VSDTAG+R++  DP+E EGIRRAR+AA RA +TVLV D                          DL T +RA+ G              + VLNK D V+ E   E L          S   +  SL   EG+ E++  L++ + E+       D  G +     AP+ITR RHR H++  + AL + + G  G      L +D+AAE+LRIA+ ELG ITG +D EEVLDVIF++FCIGK
Sbjct:    7 HSSAPFPAPRMASLRKLYSPVGQEALDQAIVLWLPGPRSFTGEDTVELHCHGSRAVVQGVTEALLALDKGGKARVRLAEPGEFTERAFANGRMDLTEVEGLADLIAADTAAQRKQALKQMGGALRQTYEGWREELKVCLAHTEAVIDFGDDELDVDEAAYDAIRPRVRRLSEEMRRHLADGGRGEVIRAGIRVAIVGPPNAGKSTMLNTLARRPAAIVSPAAGTTRDVVEVQLDVGGLPVLVSDTAGIREAARDPVEQEGIRRAREAAGRAQLTVLVLDAAEVLGREAFASLAGVGPFLKDAPPEDLETVLRAVGGDAGA----------LLVLNKRDTVEGEHLLEQLRCAGAGKGGTSTAAYLVSLSTGEGVEEMLAGLQARLEEVF------DKDGTDDERAEAPVITRARHRVHVERCLEALTASM-GEQG------LGLDVAAEELRIASTELGRITGAVDVEEVLDVIFRDFCIGK 465          
BLAST of Gvermi6793.t1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE)

HSP 1 Score: 413 bits (1061), Expect = 3.680e-134
Identity = 268/626 (42.81%), Postives = 337/626 (53.83%), Query Frame = 0
Query:   65 SPLSVPHSEFQEDTIFALSSGAGVTAGVGVIRISGPHATACLRKLLRSHSHSAV-----------------------------------PQPRYASLRRLHHPTSSDLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAIA--DCASSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDDVED----QVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAI------------------------------RALSGQLSLRNSDSVSNNLVCVLNKVDLV-----------DEPAKEVLD---------------------------------GSFT----------------IFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            SPL  P S   EDTIFAL++G    AGV V+RISGP +   L+ L  + + S+                                    P  R A +RRL+ P + DLLDEALVL+ PGPRSFTGED VELH HGSRAVI+ V+DA+A    AS    VR AERGEFT+RA+ NG+MDLT VEGLADL+AA+TA QRKQAL+Q  G L++  E WR  +K CLAH EAVIDFGDD ED      F  ++PR+R L   I  HLRD  RGEI+R G RVAIVG PNAGKS+LLN LA RPAAIVSP AGTTRDVVEVQ+D+ GL VT+SDTAGLR++T+D IE EG+RRAR A   A + + V D T+ D  TA+                                + G           ++L+ V NK DL            D   +E+                                   G+ T                +++ S    EGL   + HLE+ +R   +G A  +S          P+ITR RHR H++  + AL      R+ + P +  P+DLAAE+LRIA+ ELG ITG +  EE+LDVIF++FCIGK
Sbjct:   20 SPLPSPSSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSATTLSSATAAEASAGRDAGVAXXXXXXXXXXXXXAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELHTHGSRAVINGVLDALAAMGAASGLRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLVAADTAAQRKQALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDEEDVGGDAAFSAMMPRVRGLAAEIDRHLRDGGRGEIVRSGVRVAIVGPPNAGKSSLLNLLAARPAAIVSPVAGTTRDVVEVQMDIAGLPVTLSDTAGLREATDDEIEREGMRRARSAVDNAHLAIFVVDATNTDGATALLGKLREEAKEAEAEAEAAVTAAQRDYAAETEGVFGGXXXXXXXXXLDDLIVVANKADLALTLLEGESGEADHHERELTSLAAAAAAATXASGPGTTAEAVGSRAGAAETDGVGAATRGTEGDEEGTSGSGGRVWKVSCKTKEGLDGFMEHLEAEVRSRFQGAADDES----------PLITRRRHRQHVEACLLAL------RAAQRPQM--PLDLAAEELRIASSELGRITGAVGVEELLDVIFRDFCIGK 627          
BLAST of Gvermi6793.t1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 1.030e-131
Identity = 268/640 (41.88%), Postives = 339/640 (52.97%), Query Frame = 0
Query:   52 STRDHAPQVAQYSSPLSVPHSEFQEDTIFALSSGAGVTAGVGVIRISGPHATACLRKLLRSHSHSAV----------------------------------PQPRYASLRRLHHPTSSDLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAIAD--CASSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDDVED----QVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAI----------------------------RALSGQLSLRNSDSVSNNLVCVLNKVDLV----------------------------------------------------------------DEPAKEVLDGSFTIFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            + ++    ++   SPL    S   EDTIFAL++G    AGV V+RISGP +   L+ L  + + S+V                                  P  R A +RRL+ P + DLLDEALVL+ PGPRSFTGED VELH HGSRAVI+ V+DA+A    AS    VR AERGEFT+RA+ NG+MDLT VEGLADLIAA+TA QRKQAL+Q  G L++  E WR  +K CLAH EAVIDFGDD ED      F  ++PR+R L   I  HLRD  RGEI+R G RVAIVG PNAGKS+LLN LA RPAAIVSP AGTTRDVVEVQ+D+ GL VT+SDTAGL  +T+D IE EG+RRAR A   A + + V D T+ D  TA+                              + G  S     +  ++L+ V NK DL                                                                 DE  +    G   +++ S    EGL   + HLE+ +R   +G A  +S          P+ITR RHR H++  + AL      R+ + P +  P+DLAAE+LRIA+ ELG ITG +  EE+LDVIF++FCIGK
Sbjct:  171 TNKEDGDLISTTRSPLPSASSSSSEDTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDEALVLWMPGPRSFTGEDTVELHTHGSRAVINGVLDALAGMGAASGMRRVRLAERGEFTQRAYGNGRMDLTGVEGLADLIAADTAAQRKQALKQMGGALRDMYEEWRHQLKGCLAHAEAVIDFGDDEEDVGGDAAFAAMMPRVRGLAAEIDRHLRDGGRGEIVRSGVRVAIVGPPNAGKSSLLNLLAARPAAIVSPVAGTTRDVVEVQMDIAGLPVTLSDTAGLPKATDDEIEREGMRRARSAVDNAHLAIFVVDATNTDGATALLGKLREEAKEAEAEAAATAAQRDDAAEMEGVFGSGSSGGGSAALDDLIVVANKADLALTLLEGESGEAEHHEQELTSLXXXXXXXXXXXXXGPGRTAEAVGSRAGAAEMDGVGAATRGTEGDEEGRS--GGGGRVWKLSCKTKEGLDGFMEHLEAEVRSRFQGAADDES----------PLITRRRHRQHVEACLLAL------RAAQRPQM--PLDLAAEELRIASSELGRITGAVGVEELLDVIFRDFCIGK 790          
BLAST of Gvermi6793.t1 vs. uniprot
Match: A0A484EFB1_BRELC (TrmE-type G domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFB1_BRELC)

HSP 1 Score: 390 bits (1002), Expect = 4.110e-127
Identity = 243/496 (48.99%), Postives = 318/496 (64.11%), Query Frame = 0
Query:   74 FQEDTIFALSSGAGVTAGVGVIRISGPHATACLRKLLRSHSHSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDDVEDQVF---EQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDV-TSGDLNTAIRALSGQLSLRNSDSVSNNLVCVLNKVDLVD----EPAKEVLDGSFT--IFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            ++ DTI+ALSS  G  AGV VIRISG  A  CL++L +S     +P+PR+A+LR+L+HP +   LD+ALVL FP P SFTGEDVVELH HGS AVIS+V++A++         R AE GEFT RAF+N ++DL  VEGLADL++AET  QR QALRQ +G + E  E WR  +  CLA+VEA+IDFGDD +D  F   E  V R+REL + I  HL D  RGEI+R G +VAIVG PNAGKS+LLN LA+RPAAIVS  AGTTRD+V+V L++ G  V VSDTAGLR+ T D IE EG+ RA   AS AD+ V++ D+  +G L          L+ +    + +  + VLNK DLVD    E   E +D      +   S  + + +   V++L S ++E  E     +S G  +S N A IITR RHR ++ + +S+LD FL      DP      +LAAEDLR A   +G I G+ID E++LDV+F +FCIGK
Sbjct:   32 YELDTIYALSSAPG-KAGVAVIRISGEQANLCLQQLSKS---LTLPRPRFAALRKLYHPKTKTHLDDALVLRFPHPHSFTGEDVVELHTHGSAAVISSVLEALSIVPHC----RAAEAGEFTERAFDNDKIDLLQVEGLADLLSAETEAQRHQALRQLSGDIGEIYEGWRHTLVKCLAYVEAMIDFGDDEDDVTFAAYEAAVKRVRELADSICGHLADNRRGEILRNGFQVAIVGPPNAGKSSLLNRLARRPAAIVSSIAGTTRDIVQVPLNIAGYPVIVSDTAGLRE-TEDVIEKEGVLRAEQCASDADICVVMMDIQNAGTL----------LTEKYQSYLRSGAMIVLNKSDLVDKIHIESVLETVDSKLLERLLVVSCTEGDNIEAFVDNLASIVKEKIE-----ESGG--NSTNGA-IITRERHRQNLVSCLSSLDQFL-----LDP---YQSELAAEDLRRAVAAIGRILGRIDVEDILDVLFADFCIGK 492          
BLAST of Gvermi6793.t1 vs. uniprot
Match: A0A1V9Y6N3_9STRA (tRNA modification GTPase TrmE n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6N3_9STRA)

HSP 1 Score: 389 bits (999), Expect = 5.740e-127
Identity = 224/486 (46.09%), Postives = 300/486 (61.73%), Query Frame = 0
Query:   77 DTIFALSSGAGVTAGVGVIRISGPHATACLRKLLRSHSHSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDD---VEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAIRALSGQLSLRNSDSVSNNLVCVLNKVDLVDEPAKEVLDGSFTIFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            DTI+ALSS  G  AGV V+RISGP A  CL +L +      +P+PR A +R +HHPTS +LLD A+ + FP P+SFTGEDVVELH+HGSR V+  V+ A+A+  S     RPAE GEFT RAFEN +MDL  VEGLADL+ AET  QRKQAL Q +G + +  E WR  +  C+AH EA+IDFGDD   V D  ++ ++ +++EL   I+ HL D  RGEI+R G +VAI+G PNAGKS+LLN LA+R AAIVSP AGTTRD+V+V L+L G  VT+SDTAG+R+ T+D IE EG+ RA      A + +LV DV   ++  ++  L           +  N + VLNK DL        +  +  +   S     G+  L+  L+  + E+       ++ G         +ITR RHR H+ + V  L +FL     E P      +LAAEDLR A   +G I G++D E++LDV+FK+FCIGK
Sbjct:   20 DTIYALSSAEG-RAGVAVVRISGPQANWCLMQLSKDKK-KPLPKPRMAVVRDIHHPTSRELLDSAMAIRFPQPKSFTGEDVVELHLHGSRPVVKGVLQALAEIPSC----RPAEAGEFTERAFENHKMDLMQVEGLADLLNAETEAQRKQALHQISGSVGQVYEEWRMTLIRCMAHAEAMIDFGDDEDDVTDAAYDSVILKVQELLGSIQKHLADGRRGEILRNGVQVAILGAPNAGKSSLLNILAQRDAAIVSPIAGTTRDIVQVPLNLAGYPVTLSDTAGIRE-TDDIIEQEGVLRAHKCREEAHIKLLVVDVQGSNIKESVETL-----------IDQNTIVVLNKSDLASVQLSSEVKNAKAVCSISCQSGIGIDSLLEILQRQVSEMFSH-VNDEAQGL--------LITRERHRKHLNDCVIHLSNFL-----EHPH---QSELAAEDLRRAIHSIGRIVGRVDVEDILDVLFKDFCIGK 470          
BLAST of Gvermi6793.t1 vs. uniprot
Match: A0A2A4U3X7_9PROT (tRNA modification GTPase MnmE n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2A4U3X7_9PROT)

HSP 1 Score: 388 bits (996), Expect = 8.210e-127
Identity = 233/485 (48.04%), Postives = 313/485 (64.54%), Query Frame = 0
Query:   77 DTIFALSSGAGVTAGVGVIRISGPHATACLRKLLRSHSHSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPRSFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVVRPAERGEFTRRAFENGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCLAHVEAVIDFGDD-VEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGARVAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTVSDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSG-DLNTAIRALSGQLSLRNSDSVSNNLVCVLNKVDLVDEPAKEVLDGSFTIFRTSLLQNEGLTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAVSALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDVIFKEFCIGK 559
            +TI+AL+S  G  AGV VIRISGP A A L+ L +  +     +PR A+L RL HP S + LD+ALVL F  P SFTGEDV ELH+HG  AVI  +++A++ CA     +R AE GEFTRRAF NG++DLT VEGLADLI +ET  QRKQALRQ  G L E  + WR  +  CLAH EA +DF D+ + D +  ++   +  L+N+IRSHL+DA RGE +R G R+AI+G PNAGKS+L+NALA+R AAIVS  AGTTRDVVEV L+L G  + V+DTAGLR+ST D IE EG+RRA   A  AD+ ++V D T   D +         +SL+  D   ++ +  +NK D++  P  E + G+  +   S+   +GL+ L++ L   ++ +C          + S+  PAP  TR RHR  ++    ALD FL      D S  +  +L AEDLR+AA+ELG ITG++D E++LDVIF++FCIGK
Sbjct:    3 ETIYALASAQG-KAGVAVIRISGPEALATLQTLTQKPAF----EPRIANLTRLFHPKSGEALDDALVLSFKAPASFTGEDVAELHIHGGLAVIDGMLEALSACAG----LRFAEAGEFTRRAFANGKLDLTQVEGLADLIESETEAQRKQALRQSEGALGEIYDHWRHKLVACLAHFEAELDFSDEEIPDDLHNKVRLDVAHLQNQIRSHLKDARRGERLRNGIRLAIIGPPNAGKSSLMNALAQRDAAIVSDIAGTTRDVVEVHLNLGGYPLLVADTAGLREST-DEIEQEGVRRAEAWAQTADIKLVVLDGTEAPDFDP--------ISLKLID---DHTIVAINKADVMKLPMPERIQGT-PVLCLSVKTGQGLSALLDQLTVRVKNLC----------RSSADGPAP--TRARHREALQRTEQALDRFLT----RDHSSTMGSELEAEDLRLAARELGRITGRVDVEDLLDVIFRDFCIGK 449          
The following BLAST results are available for this feature:
BLAST of Gvermi6793.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXG2_9FLOR1.480e-25968.16tRNA modification GTPase GTPBP3, mitochondrial n=1... [more]
R7QKJ8_CHOCR3.050e-16162.86TrmE-type G domain-containing protein n=1 Tax=Chon... [more]
A0A836CK05_9STRA3.020e-14451.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J4YTG5_PORPP2.260e-14349.51tRNA modification GTPase GTPBP3, mitochondrial n=1... [more]
A0A4D9CTT5_9STRA1.550e-13950.83TrmE-type G domain-containing protein n=4 Tax=Mono... [more]
A0A6H5K111_9PHAE3.680e-13442.81TrmE-type G domain-containing protein n=1 Tax=Ecto... [more]
D8LG51_ECTSI1.030e-13141.88TrmE, organellal GTPase involved in tRNA modificat... [more]
A0A484EFB1_BRELC4.110e-12748.99TrmE-type G domain-containing protein n=1 Tax=Brem... [more]
A0A1V9Y6N3_9STRA5.740e-12746.09tRNA modification GTPase TrmE n=1 Tax=Thraustothec... [more]
A0A2A4U3X7_9PROT8.210e-12748.04tRNA modification GTPase MnmE n=1 Tax=Rhodospirill... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006073GTP binding domainPFAMPF01926MMR_HSR1coord: 300..403
e-value: 5.1E-21
score: 74.9
IPR027368tRNA modification GTPase MnmE domain 2GENE3D1.20.120.430tRNA modification GTPase MnmE domain 2coord: 204..559
e-value: 3.8E-104
score: 351.1
IPR004520tRNA modification GTPase MnmETIGRFAMTIGR00450TIGR00450coord: 90..559
e-value: 2.9E-82
score: 275.1
IPR004520tRNA modification GTPase MnmEHAMAPMF_00379GTPase_MnmEcoord: 77..559
score: 30.129841
IPR025867MnmE, helical domainPFAMPF12631MnmE_helicalcoord: 206..556
e-value: 2.1E-50
score: 172.2
IPR027266GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1GENE3D3.30.1360.120Probable tRNA modification gtpase trme; domain 1coord: 72..203
e-value: 1.1E-43
score: 150.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 299..477
e-value: 3.8E-104
score: 351.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 151..458
IPR018948GTP-binding protein TrmE, N-terminalPFAMPF10396TrmE_Ncoord: 78..202
e-value: 1.8E-37
score: 128.2
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 299..455
e-value: 1.4E-17
score: 61.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..488
NoneNo IPR availablePANTHERPTHR42714TRNA MODIFICATION GTPASE GTPBP3coord: 76..559
NoneNo IPR availablePANTHERPTHR42714:SF2TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIALcoord: 76..559
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..559
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availableSUPERFAMILY116878TrmE connector domaincoord: 204..559
IPR031168TrmE-type guanine nucleotide-binding domainPROSITEPS51709G_TRMEcoord: 298..463
score: 59.716843
IPR031168TrmE-type guanine nucleotide-binding domainCDDcd04164trmEcoord: 296..460
e-value: 2.52563E-47
score: 160.738

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2318783..2320462 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6793.t1Gvermi6793.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2318783..2320462 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6793.t1 ID=Gvermi6793.t1|Name=Gvermi6793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=560bp
MALLFARSVAFPRSRGVVLAALRGNFGCGWRRRTPATHRPIRIAFLNIRA
VSTRDHAPQVAQYSSPLSVPHSEFQEDTIFALSSGAGVTAGVGVIRISGP
HATACLRKLLRSHSHSAVPQPRYASLRRLHHPTSSDLLDEALVLYFPGPR
SFTGEDVVELHVHGSRAVISAVMDAIADCASSQVVVRPAERGEFTRRAFE
NGQMDLTAVEGLADLIAAETAMQRKQALRQFTGHLKETLESWRSDIKTCL
AHVEAVIDFGDDVEDQVFEQIVPRIRELRNRIRSHLRDAHRGEIIRGGAR
VAIVGQPNAGKSTLLNALAKRPAAIVSPHAGTTRDVVEVQLDLNGLAVTV
SDTAGLRDSTNDPIEIEGIRRARDAASRADVTVLVHDVTSGDLNTAIRAL
SGQLSLRNSDSVSNNLVCVLNKVDLVDEPAKEVLDGSFTIFRTSLLQNEG
LTELVNHLESSIREICEGGAKKDSSGKESSANPAPIITRTRHRYHMKNAV
SALDSFLDGRSGEDPSLYLPMDLAAEDLRIAAKELGAITGKIDCEEVLDV
IFKEFCIGK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006073GTP-bd
IPR027368MnmE_dom2
IPR004520GTPase_MnmE
IPR025867MnmE_helical
IPR027266TrmE/GcvT_dom1
IPR027417P-loop_NTPase
IPR018948GTP-bd_TrmE_N
IPR005225Small_GTP-bd_dom
IPR031168G_TrmE