Gvermi6772.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6772.t1
Unique Name	Gvermi6772.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	543

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2233901..2235529 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102129.Lepto7375DRAFT_5594
Preferred name	thiG
PFAMs	DAO,ThiG
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC03096,RC03097,RC03461
KEGG ko	ko:K03149
KEGG Reaction	R10247
KEGG Pathway	ko00730,ko01100,map00730,map01100
Evalue	8.37e-56
EggNOG OGs	COG0665@1\|root,COG2022@1\|root,COG0665@2\|Bacteria,COG2022@2\|Bacteria,1FZYU@1117\|Cyanobacteria,1H713@1150\|Oscillatoriales
EC	2.8.1.10
Description	Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S
COG category	H
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6772	Gvermi6772	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2233901..2235529 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6772.t1.start1	Gvermi6772.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2233901..2233903 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6772.t1.CDS1	Gvermi6772.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2233901..2235529 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6772.t1.exon1	Gvermi6772.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2233901..2235529 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6772.t1.stop1	Gvermi6772.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2235527..2235529 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6772.t1	Gvermi6772.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2233901..2235529 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2233901..2235529+
coding sequence from alignment at ScGOVlb_88:2233901..2235529+

mRNA sequence

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=543bp
MLAPSSEPLSGPLLTLAEHSLRLYPSFVRNLHAISGQNVQFVSRSDFLVP
YFENTTGDHLIQADAVRLIEPALGPNVVAVRRHPGDASVDNRRMLNALRV
ACEKLGVTFSEVPVRTIVASCDSPHIAALESETGERIHAAHFVVAAGAWT
KKLLPMVPVRPVKGQMISLAPPPSSYPLLNHVIHSSKLYIVPKNHLNEYY
VGATMEECGFDARNTPAGVKQLIDAAIDLVPAMADYEIRDMWTGFRPTTP
DEAPIFGPCTFDNLTVSTGFYRNGILLAPIAAKIAAAYAQGQIASLPSDL
QHVLDKFTIERFYTNNISNKTDVTSTLYQPSEAADNIRPPVGSGPSSLNT
EQPHSIGQIKLWKILPDGTNEPVYPPGWKAQKNKPSPEFSLSINSSEGPL
PQTPSAPSIRNEVTPPSQPAESQKFEAVSAVNDAYDDILHKRGPGMQESM
SNALAQNRAFGRKPCSLQREDGPVLSISEDDVKRCDAAAEMGYRDMQELE
KCFDPKHGSVIATRTETGLTDTDGISPKVFVGGVELAPPTAL*

spliced messenger RNA

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at ScGOVlb_88:2233901..2235529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCGCCTTCTTCTGAGCCGCTCTCAGGCCCGCTGCTAACCCTCGC
GGAGCACTCGCTGCGACTATACCCGTCCTTTGTGCGCAACTTGCATGCCA
TTTCGGGCCAAAATGTACAATTCGTATCGCGCTCGGACTTTCTCGTTCCG
TATTTTGAGAACACCACCGGCGATCATCTCATACAAGCCGATGCTGTTCG
CCTCATCGAGCCGGCACTCGGCCCCAACGTGGTAGCCGTCCGACGTCATC
CCGGCGATGCCAGCGTGGACAACCGCCGCATGCTAAACGCTCTTCGCGTC
GCATGTGAGAAGCTTGGTGTCACCTTCTCCGAGGTGCCCGTGCGCACCAT
TGTTGCGTCCTGTGATTCCCCTCACATAGCTGCCCTCGAATCTGAGACTG
GAGAACGCATCCATGCCGCCCATTTTGTAGTAGCCGCCGGTGCATGGACC
AAAAAATTGTTGCCAATGGTACCAGTACGGCCCGTCAAAGGCCAGATGAT
ATCGCTTGCTCCTCCACCTTCATCCTATCCTCTTCTCAATCACGTGATCC
ACAGTTCGAAGCTCTATATTGTCCCGAAGAACCACTTGAATGAGTATTAT
GTCGGTGCGACTATGGAAGAGTGCGGGTTTGACGCTCGAAACACACCTGC
GGGTGTGAAACAACTGATCGATGCCGCCATCGACCTGGTACCCGCCATGG
CTGACTATGAAATTCGCGACATGTGGACTGGCTTCCGCCCGACCACACCC
GATGAAGCTCCAATTTTCGGGCCGTGCACCTTTGATAATCTCACCGTGTC
GACTGGTTTCTACAGAAACGGTATTCTTCTTGCGCCCATTGCAGCCAAAA
TCGCTGCTGCATACGCTCAGGGCCAGATCGCTAGCTTGCCCTCAGATCTT
CAGCACGTGTTAGACAAGTTCACTATCGAGCGCTTTTATACAAATAACAT
TAGCAATAAGACGGACGTGACTTCAACGCTCTATCAACCATCAGAAGCCG
CAGATAATATTCGCCCTCCTGTTGGCAGTGGGCCAAGTTCTCTCAACACA
GAGCAGCCGCACAGCATTGGACAAATTAAGCTGTGGAAGATTTTACCAGA
TGGAACAAATGAGCCCGTCTACCCCCCTGGATGGAAAGCTCAAAAGAACA
AACCCTCTCCAGAGTTTTCTTTGTCCATCAACAGCAGCGAAGGTCCACTA
CCGCAGACACCATCGGCTCCAAGCATACGCAATGAAGTGACTCCCCCATC
GCAACCAGCTGAGTCTCAAAAATTCGAAGCCGTTAGCGCCGTGAATGATG
CGTACGACGACATCTTGCACAAACGAGGGCCGGGTATGCAAGAATCAATG
TCGAATGCTCTCGCCCAGAACAGGGCTTTTGGACGAAAACCGTGTTCTCT
TCAAAGAGAAGACGGTCCAGTCCTATCTATCAGTGAAGACGATGTGAAAA
GATGCGACGCCGCGGCGGAGATGGGCTATCGAGACATGCAAGAATTAGAA
AAGTGTTTTGATCCCAAACATGGAAGTGTGATTGCTACGAGAACAGAAAC
CGGATTAACGGACACAGACGGAATCAGCCCGAAGGTTTTCGTCGGCGGCG
TAGAGCTCGCACCTCCTACTGCATTATAA

protein sequence of Gvermi6772.t1

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=543bp
MLAPSSEPLSGPLLTLAEHSLRLYPSFVRNLHAISGQNVQFVSRSDFLVP
YFENTTGDHLIQADAVRLIEPALGPNVVAVRRHPGDASVDNRRMLNALRV
ACEKLGVTFSEVPVRTIVASCDSPHIAALESETGERIHAAHFVVAAGAWT
KKLLPMVPVRPVKGQMISLAPPPSSYPLLNHVIHSSKLYIVPKNHLNEYY
VGATMEECGFDARNTPAGVKQLIDAAIDLVPAMADYEIRDMWTGFRPTTP
DEAPIFGPCTFDNLTVSTGFYRNGILLAPIAAKIAAAYAQGQIASLPSDL
QHVLDKFTIERFYTNNISNKTDVTSTLYQPSEAADNIRPPVGSGPSSLNT
EQPHSIGQIKLWKILPDGTNEPVYPPGWKAQKNKPSPEFSLSINSSEGPL
PQTPSAPSIRNEVTPPSQPAESQKFEAVSAVNDAYDDILHKRGPGMQESM
SNALAQNRAFGRKPCSLQREDGPVLSISEDDVKRCDAAAEMGYRDMQELE
KCFDPKHGSVIATRTETGLTDTDGISPKVFVGGVELAPPTAL*

mRNA from alignment at ScGOVlb_88:2233901..2235529+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at ScGOVlb_88:2233901..2235529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGCGCCTTCTTCTGAGCCGCTCTCAGGCCCGCTGCTAACCCTCGC
GGAGCACTCGCTGCGACTATACCCGTCCTTTGTGCGCAACTTGCATGCCA
TTTCGGGCCAAAATGTACAATTCGTATCGCGCTCGGACTTTCTCGTTCCG
TATTTTGAGAACACCACCGGCGATCATCTCATACAAGCCGATGCTGTTCG
CCTCATCGAGCCGGCACTCGGCCCCAACGTGGTAGCCGTCCGACGTCATC
CCGGCGATGCCAGCGTGGACAACCGCCGCATGCTAAACGCTCTTCGCGTC
GCATGTGAGAAGCTTGGTGTCACCTTCTCCGAGGTGCCCGTGCGCACCAT
TGTTGCGTCCTGTGATTCCCCTCACATAGCTGCCCTCGAATCTGAGACTG
GAGAACGCATCCATGCCGCCCATTTTGTAGTAGCCGCCGGTGCATGGACC
AAAAAATTGTTGCCAATGGTACCAGTACGGCCCGTCAAAGGCCAGATGAT
ATCGCTTGCTCCTCCACCTTCATCCTATCCTCTTCTCAATCACGTGATCC
ACAGTTCGAAGCTCTATATTGTCCCGAAGAACCACTTGAATGAGTATTAT
GTCGGTGCGACTATGGAAGAGTGCGGGTTTGACGCTCGAAACACACCTGC
GGGTGTGAAACAACTGATCGATGCCGCCATCGACCTGGTACCCGCCATGG
CTGACTATGAAATTCGCGACATGTGGACTGGCTTCCGCCCGACCACACCC
GATGAAGCTCCAATTTTCGGGCCGTGCACCTTTGATAATCTCACCGTGTC
GACTGGTTTCTACAGAAACGGTATTCTTCTTGCGCCCATTGCAGCCAAAA
TCGCTGCTGCATACGCTCAGGGCCAGATCGCTAGCTTGCCCTCAGATCTT
CAGCACGTGTTAGACAAGTTCACTATCGAGCGCTTTTATACAAATAACAT
TAGCAATAAGACGGACGTGACTTCAACGCTCTATCAACCATCAGAAGCCG
CAGATAATATTCGCCCTCCTGTTGGCAGTGGGCCAAGTTCTCTCAACACA
GAGCAGCCGCACAGCATTGGACAAATTAAGCTGTGGAAGATTTTACCAGA
TGGAACAAATGAGCCCGTCTACCCCCCTGGATGGAAAGCTCAAAAGAACA
AACCCTCTCCAGAGTTTTCTTTGTCCATCAACAGCAGCGAAGGTCCACTA
CCGCAGACACCATCGGCTCCAAGCATACGCAATGAAGTGACTCCCCCATC
GCAACCAGCTGAGTCTCAAAAATTCGAAGCCGTTAGCGCCGTGAATGATG
CGTACGACGACATCTTGCACAAACGAGGGCCGGGTATGCAAGAATCAATG
TCGAATGCTCTCGCCCAGAACAGGGCTTTTGGACGAAAACCGTGTTCTCT
TCAAAGAGAAGACGGTCCAGTCCTATCTATCAGTGAAGACGATGTGAAAA
GATGCGACGCCGCGGCGGAGATGGGCTATCGAGACATGCAAGAATTAGAA
AAGTGTTTTGATCCCAAACATGGAAGTGTGATTGCTACGAGAACAGAAAC
CGGATTAACGGACACAGACGGAATCAGCCCGAAGGTTTTCGTCGGCGGCG
TAGAGCTCGCACCTCCTACTGCATTATAA

Coding sequence (CDS) from alignment at ScGOVlb_88:2233901..2235529+

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1629bp|location=Sequence derived from alignment at ScGOVlb_88:2233901..2235529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGCGCCTTCTTCTGAGCCGCTCTCAGGCCCGCTGCTAACCCTCGC
GGAGCACTCGCTGCGACTATACCCGTCCTTTGTGCGCAACTTGCATGCCA
TTTCGGGCCAAAATGTACAATTCGTATCGCGCTCGGACTTTCTCGTTCCG
TATTTTGAGAACACCACCGGCGATCATCTCATACAAGCCGATGCTGTTCG
CCTCATCGAGCCGGCACTCGGCCCCAACGTGGTAGCCGTCCGACGTCATC
CCGGCGATGCCAGCGTGGACAACCGCCGCATGCTAAACGCTCTTCGCGTC
GCATGTGAGAAGCTTGGTGTCACCTTCTCCGAGGTGCCCGTGCGCACCAT
TGTTGCGTCCTGTGATTCCCCTCACATAGCTGCCCTCGAATCTGAGACTG
GAGAACGCATCCATGCCGCCCATTTTGTAGTAGCCGCCGGTGCATGGACC
AAAAAATTGTTGCCAATGGTACCAGTACGGCCCGTCAAAGGCCAGATGAT
ATCGCTTGCTCCTCCACCTTCATCCTATCCTCTTCTCAATCACGTGATCC
ACAGTTCGAAGCTCTATATTGTCCCGAAGAACCACTTGAATGAGTATTAT
GTCGGTGCGACTATGGAAGAGTGCGGGTTTGACGCTCGAAACACACCTGC
GGGTGTGAAACAACTGATCGATGCCGCCATCGACCTGGTACCCGCCATGG
CTGACTATGAAATTCGCGACATGTGGACTGGCTTCCGCCCGACCACACCC
GATGAAGCTCCAATTTTCGGGCCGTGCACCTTTGATAATCTCACCGTGTC
GACTGGTTTCTACAGAAACGGTATTCTTCTTGCGCCCATTGCAGCCAAAA
TCGCTGCTGCATACGCTCAGGGCCAGATCGCTAGCTTGCCCTCAGATCTT
CAGCACGTGTTAGACAAGTTCACTATCGAGCGCTTTTATACAAATAACAT
TAGCAATAAGACGGACGTGACTTCAACGCTCTATCAACCATCAGAAGCCG
CAGATAATATTCGCCCTCCTGTTGGCAGTGGGCCAAGTTCTCTCAACACA
GAGCAGCCGCACAGCATTGGACAAATTAAGCTGTGGAAGATTTTACCAGA
TGGAACAAATGAGCCCGTCTACCCCCCTGGATGGAAAGCTCAAAAGAACA
AACCCTCTCCAGAGTTTTCTTTGTCCATCAACAGCAGCGAAGGTCCACTA
CCGCAGACACCATCGGCTCCAAGCATACGCAATGAAGTGACTCCCCCATC
GCAACCAGCTGAGTCTCAAAAATTCGAAGCCGTTAGCGCCGTGAATGATG
CGTACGACGACATCTTGCACAAACGAGGGCCGGGTATGCAAGAATCAATG
TCGAATGCTCTCGCCCAGAACAGGGCTTTTGGACGAAAACCGTGTTCTCT
TCAAAGAGAAGACGGTCCAGTCCTATCTATCAGTGAAGACGATGTGAAAA
GATGCGACGCCGCGGCGGAGATGGGCTATCGAGACATGCAAGAATTAGAA
AAGTGTTTTGATCCCAAACATGGAAGTGTGATTGCTACGAGAACAGAAAC
CGGATTAACGGACACAGACGGAATCAGCCCGAAGGTTTTCGTCGGCGGCG
TAGAGCTCGCACCTCCTACTGCATTATAA