Gvermi6772.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6772.t1
Unique NameGvermi6772.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2233901..2235529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102129.Lepto7375DRAFT_5594
Preferred namethiG
PFAMsDAO,ThiG
Max annot lvl1117|Cyanobacteria
KEGG rclassRC03096,RC03097,RC03461
KEGG koko:K03149
KEGG ReactionR10247
KEGG Pathwayko00730,ko01100,map00730,map01100
Evalue8.37e-56
EggNOG OGsCOG0665@1|root,COG2022@1|root,COG0665@2|Bacteria,COG2022@2|Bacteria,1FZYU@1117|Cyanobacteria,1H713@1150|Oscillatoriales
EC2.8.1.10
DescriptionCatalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6772Gvermi6772Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2233901..2235529 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6772.t1.start1Gvermi6772.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2233901..2233903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6772.t1.CDS1Gvermi6772.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2233901..2235529 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6772.t1.exon1Gvermi6772.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2233901..2235529 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6772.t1.stop1Gvermi6772.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2235527..2235529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6772.t1Gvermi6772.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2233901..2235529 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=543bp
MLAPSSEPLSGPLLTLAEHSLRLYPSFVRNLHAISGQNVQFVSRSDFLVP
YFENTTGDHLIQADAVRLIEPALGPNVVAVRRHPGDASVDNRRMLNALRV
ACEKLGVTFSEVPVRTIVASCDSPHIAALESETGERIHAAHFVVAAGAWT
KKLLPMVPVRPVKGQMISLAPPPSSYPLLNHVIHSSKLYIVPKNHLNEYY
VGATMEECGFDARNTPAGVKQLIDAAIDLVPAMADYEIRDMWTGFRPTTP
DEAPIFGPCTFDNLTVSTGFYRNGILLAPIAAKIAAAYAQGQIASLPSDL
QHVLDKFTIERFYTNNISNKTDVTSTLYQPSEAADNIRPPVGSGPSSLNT
EQPHSIGQIKLWKILPDGTNEPVYPPGWKAQKNKPSPEFSLSINSSEGPL
PQTPSAPSIRNEVTPPSQPAESQKFEAVSAVNDAYDDILHKRGPGMQESM
SNALAQNRAFGRKPCSLQREDGPVLSISEDDVKRCDAAAEMGYRDMQELE
KCFDPKHGSVIATRTETGLTDTDGISPKVFVGGVELAPPTAL*
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spliced messenger RNA

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at ScGOVlb_88:2233901..2235529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCGCCTTCTTCTGAGCCGCTCTCAGGCCCGCTGCTAACCCTCGC
GGAGCACTCGCTGCGACTATACCCGTCCTTTGTGCGCAACTTGCATGCCA
TTTCGGGCCAAAATGTACAATTCGTATCGCGCTCGGACTTTCTCGTTCCG
TATTTTGAGAACACCACCGGCGATCATCTCATACAAGCCGATGCTGTTCG
CCTCATCGAGCCGGCACTCGGCCCCAACGTGGTAGCCGTCCGACGTCATC
CCGGCGATGCCAGCGTGGACAACCGCCGCATGCTAAACGCTCTTCGCGTC
GCATGTGAGAAGCTTGGTGTCACCTTCTCCGAGGTGCCCGTGCGCACCAT
TGTTGCGTCCTGTGATTCCCCTCACATAGCTGCCCTCGAATCTGAGACTG
GAGAACGCATCCATGCCGCCCATTTTGTAGTAGCCGCCGGTGCATGGACC
AAAAAATTGTTGCCAATGGTACCAGTACGGCCCGTCAAAGGCCAGATGAT
ATCGCTTGCTCCTCCACCTTCATCCTATCCTCTTCTCAATCACGTGATCC
ACAGTTCGAAGCTCTATATTGTCCCGAAGAACCACTTGAATGAGTATTAT
GTCGGTGCGACTATGGAAGAGTGCGGGTTTGACGCTCGAAACACACCTGC
GGGTGTGAAACAACTGATCGATGCCGCCATCGACCTGGTACCCGCCATGG
CTGACTATGAAATTCGCGACATGTGGACTGGCTTCCGCCCGACCACACCC
GATGAAGCTCCAATTTTCGGGCCGTGCACCTTTGATAATCTCACCGTGTC
GACTGGTTTCTACAGAAACGGTATTCTTCTTGCGCCCATTGCAGCCAAAA
TCGCTGCTGCATACGCTCAGGGCCAGATCGCTAGCTTGCCCTCAGATCTT
CAGCACGTGTTAGACAAGTTCACTATCGAGCGCTTTTATACAAATAACAT
TAGCAATAAGACGGACGTGACTTCAACGCTCTATCAACCATCAGAAGCCG
CAGATAATATTCGCCCTCCTGTTGGCAGTGGGCCAAGTTCTCTCAACACA
GAGCAGCCGCACAGCATTGGACAAATTAAGCTGTGGAAGATTTTACCAGA
TGGAACAAATGAGCCCGTCTACCCCCCTGGATGGAAAGCTCAAAAGAACA
AACCCTCTCCAGAGTTTTCTTTGTCCATCAACAGCAGCGAAGGTCCACTA
CCGCAGACACCATCGGCTCCAAGCATACGCAATGAAGTGACTCCCCCATC
GCAACCAGCTGAGTCTCAAAAATTCGAAGCCGTTAGCGCCGTGAATGATG
CGTACGACGACATCTTGCACAAACGAGGGCCGGGTATGCAAGAATCAATG
TCGAATGCTCTCGCCCAGAACAGGGCTTTTGGACGAAAACCGTGTTCTCT
TCAAAGAGAAGACGGTCCAGTCCTATCTATCAGTGAAGACGATGTGAAAA
GATGCGACGCCGCGGCGGAGATGGGCTATCGAGACATGCAAGAATTAGAA
AAGTGTTTTGATCCCAAACATGGAAGTGTGATTGCTACGAGAACAGAAAC
CGGATTAACGGACACAGACGGAATCAGCCCGAAGGTTTTCGTCGGCGGCG
TAGAGCTCGCACCTCCTACTGCATTATAA
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protein sequence of Gvermi6772.t1

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=543bp
MLAPSSEPLSGPLLTLAEHSLRLYPSFVRNLHAISGQNVQFVSRSDFLVP
YFENTTGDHLIQADAVRLIEPALGPNVVAVRRHPGDASVDNRRMLNALRV
ACEKLGVTFSEVPVRTIVASCDSPHIAALESETGERIHAAHFVVAAGAWT
KKLLPMVPVRPVKGQMISLAPPPSSYPLLNHVIHSSKLYIVPKNHLNEYY
VGATMEECGFDARNTPAGVKQLIDAAIDLVPAMADYEIRDMWTGFRPTTP
DEAPIFGPCTFDNLTVSTGFYRNGILLAPIAAKIAAAYAQGQIASLPSDL
QHVLDKFTIERFYTNNISNKTDVTSTLYQPSEAADNIRPPVGSGPSSLNT
EQPHSIGQIKLWKILPDGTNEPVYPPGWKAQKNKPSPEFSLSINSSEGPL
PQTPSAPSIRNEVTPPSQPAESQKFEAVSAVNDAYDDILHKRGPGMQESM
SNALAQNRAFGRKPCSLQREDGPVLSISEDDVKRCDAAAEMGYRDMQELE
KCFDPKHGSVIATRTETGLTDTDGISPKVFVGGVELAPPTAL*
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mRNA from alignment at ScGOVlb_88:2233901..2235529+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at ScGOVlb_88:2233901..2235529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGCGCCTTCTTCTGAGCCGCTCTCAGGCCCGCTGCTAACCCTCGC
GGAGCACTCGCTGCGACTATACCCGTCCTTTGTGCGCAACTTGCATGCCA
TTTCGGGCCAAAATGTACAATTCGTATCGCGCTCGGACTTTCTCGTTCCG
TATTTTGAGAACACCACCGGCGATCATCTCATACAAGCCGATGCTGTTCG
CCTCATCGAGCCGGCACTCGGCCCCAACGTGGTAGCCGTCCGACGTCATC
CCGGCGATGCCAGCGTGGACAACCGCCGCATGCTAAACGCTCTTCGCGTC
GCATGTGAGAAGCTTGGTGTCACCTTCTCCGAGGTGCCCGTGCGCACCAT
TGTTGCGTCCTGTGATTCCCCTCACATAGCTGCCCTCGAATCTGAGACTG
GAGAACGCATCCATGCCGCCCATTTTGTAGTAGCCGCCGGTGCATGGACC
AAAAAATTGTTGCCAATGGTACCAGTACGGCCCGTCAAAGGCCAGATGAT
ATCGCTTGCTCCTCCACCTTCATCCTATCCTCTTCTCAATCACGTGATCC
ACAGTTCGAAGCTCTATATTGTCCCGAAGAACCACTTGAATGAGTATTAT
GTCGGTGCGACTATGGAAGAGTGCGGGTTTGACGCTCGAAACACACCTGC
GGGTGTGAAACAACTGATCGATGCCGCCATCGACCTGGTACCCGCCATGG
CTGACTATGAAATTCGCGACATGTGGACTGGCTTCCGCCCGACCACACCC
GATGAAGCTCCAATTTTCGGGCCGTGCACCTTTGATAATCTCACCGTGTC
GACTGGTTTCTACAGAAACGGTATTCTTCTTGCGCCCATTGCAGCCAAAA
TCGCTGCTGCATACGCTCAGGGCCAGATCGCTAGCTTGCCCTCAGATCTT
CAGCACGTGTTAGACAAGTTCACTATCGAGCGCTTTTATACAAATAACAT
TAGCAATAAGACGGACGTGACTTCAACGCTCTATCAACCATCAGAAGCCG
CAGATAATATTCGCCCTCCTGTTGGCAGTGGGCCAAGTTCTCTCAACACA
GAGCAGCCGCACAGCATTGGACAAATTAAGCTGTGGAAGATTTTACCAGA
TGGAACAAATGAGCCCGTCTACCCCCCTGGATGGAAAGCTCAAAAGAACA
AACCCTCTCCAGAGTTTTCTTTGTCCATCAACAGCAGCGAAGGTCCACTA
CCGCAGACACCATCGGCTCCAAGCATACGCAATGAAGTGACTCCCCCATC
GCAACCAGCTGAGTCTCAAAAATTCGAAGCCGTTAGCGCCGTGAATGATG
CGTACGACGACATCTTGCACAAACGAGGGCCGGGTATGCAAGAATCAATG
TCGAATGCTCTCGCCCAGAACAGGGCTTTTGGACGAAAACCGTGTTCTCT
TCAAAGAGAAGACGGTCCAGTCCTATCTATCAGTGAAGACGATGTGAAAA
GATGCGACGCCGCGGCGGAGATGGGCTATCGAGACATGCAAGAATTAGAA
AAGTGTTTTGATCCCAAACATGGAAGTGTGATTGCTACGAGAACAGAAAC
CGGATTAACGGACACAGACGGAATCAGCCCGAAGGTTTTCGTCGGCGGCG
TAGAGCTCGCACCTCCTACTGCATTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2233901..2235529+

>Gvermi6772.t1 ID=Gvermi6772.t1|Name=Gvermi6772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1629bp|location=Sequence derived from alignment at ScGOVlb_88:2233901..2235529+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGCGCCTTCTTCTGAGCCGCTCTCAGGCCCGCTGCTAACCCTCGC
GGAGCACTCGCTGCGACTATACCCGTCCTTTGTGCGCAACTTGCATGCCA
TTTCGGGCCAAAATGTACAATTCGTATCGCGCTCGGACTTTCTCGTTCCG
TATTTTGAGAACACCACCGGCGATCATCTCATACAAGCCGATGCTGTTCG
CCTCATCGAGCCGGCACTCGGCCCCAACGTGGTAGCCGTCCGACGTCATC
CCGGCGATGCCAGCGTGGACAACCGCCGCATGCTAAACGCTCTTCGCGTC
GCATGTGAGAAGCTTGGTGTCACCTTCTCCGAGGTGCCCGTGCGCACCAT
TGTTGCGTCCTGTGATTCCCCTCACATAGCTGCCCTCGAATCTGAGACTG
GAGAACGCATCCATGCCGCCCATTTTGTAGTAGCCGCCGGTGCATGGACC
AAAAAATTGTTGCCAATGGTACCAGTACGGCCCGTCAAAGGCCAGATGAT
ATCGCTTGCTCCTCCACCTTCATCCTATCCTCTTCTCAATCACGTGATCC
ACAGTTCGAAGCTCTATATTGTCCCGAAGAACCACTTGAATGAGTATTAT
GTCGGTGCGACTATGGAAGAGTGCGGGTTTGACGCTCGAAACACACCTGC
GGGTGTGAAACAACTGATCGATGCCGCCATCGACCTGGTACCCGCCATGG
CTGACTATGAAATTCGCGACATGTGGACTGGCTTCCGCCCGACCACACCC
GATGAAGCTCCAATTTTCGGGCCGTGCACCTTTGATAATCTCACCGTGTC
GACTGGTTTCTACAGAAACGGTATTCTTCTTGCGCCCATTGCAGCCAAAA
TCGCTGCTGCATACGCTCAGGGCCAGATCGCTAGCTTGCCCTCAGATCTT
CAGCACGTGTTAGACAAGTTCACTATCGAGCGCTTTTATACAAATAACAT
TAGCAATAAGACGGACGTGACTTCAACGCTCTATCAACCATCAGAAGCCG
CAGATAATATTCGCCCTCCTGTTGGCAGTGGGCCAAGTTCTCTCAACACA
GAGCAGCCGCACAGCATTGGACAAATTAAGCTGTGGAAGATTTTACCAGA
TGGAACAAATGAGCCCGTCTACCCCCCTGGATGGAAAGCTCAAAAGAACA
AACCCTCTCCAGAGTTTTCTTTGTCCATCAACAGCAGCGAAGGTCCACTA
CCGCAGACACCATCGGCTCCAAGCATACGCAATGAAGTGACTCCCCCATC
GCAACCAGCTGAGTCTCAAAAATTCGAAGCCGTTAGCGCCGTGAATGATG
CGTACGACGACATCTTGCACAAACGAGGGCCGGGTATGCAAGAATCAATG
TCGAATGCTCTCGCCCAGAACAGGGCTTTTGGACGAAAACCGTGTTCTCT
TCAAAGAGAAGACGGTCCAGTCCTATCTATCAGTGAAGACGATGTGAAAA
GATGCGACGCCGCGGCGGAGATGGGCTATCGAGACATGCAAGAATTAGAA
AAGTGTTTTGATCCCAAACATGGAAGTGTGATTGCTACGAGAACAGAAAC
CGGATTAACGGACACAGACGGAATCAGCCCGAAGGTTTTCGTCGGCGGCG
TAGAGCTCGCACCTCCTACTGCATTATAA
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