Gvermi6744.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6744.t1
Unique NameGvermi6744.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2139860..2140621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7719.XP_002128969.2
Preferred nameEMC3
PFAMsDUF106
Max annot lvl33208|Metazoa
GOsGO:0001654,GO:0001894,GO:0001895,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0006457,GO:0007275,GO:0007423,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030176,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034975,GO:0042175,GO:0042592,GO:0043010,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045494,GO:0048513,GO:0048731,GO:0048856,GO:0048871,GO:0060041,GO:0060249,GO:0065007,GO:0065008,GO:0072546,GO:0097708,GO:0098796,GO:0098827
Evalue1.3e-32
EggNOG OGsKOG3188@1|root,KOG3188@2759|Eukaryota,38FG1@33154|Opisthokonta,3BA30@33208|Metazoa,3CXHP@33213|Bilateria,47Z4G@7711|Chordata
Descriptionprotein folding in endoplasmic reticulum
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6744Gvermi6744Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2139860..2140621 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6744.t1.stop1Gvermi6744.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2139860..2139862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6744.t1.CDS1Gvermi6744.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2139860..2140621 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6744.t1.exon1Gvermi6744.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2139860..2140621 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6744.t1.start1Gvermi6744.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2140619..2140621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6744.t1Gvermi6744.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2139860..2140621 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6744.t1 ID=Gvermi6744.t1|Name=Gvermi6744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=254bp
MALSDHTLDIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSV
MKTRDSNRLHRAQNLRKNGHVISRIQYETRRFYLVKEEGPLHKPPPNMSA
MSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPR
FRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTEDDL
LIPNALNQISMNVAPDRIFSQEREAVRKTSHKCHLDQFEQKLLNMSAKDF
GLY*
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spliced messenger RNA

>Gvermi6744.t1 ID=Gvermi6744.t1|Name=Gvermi6744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_88:2139860..2140621- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTGAGCGACCATACTCTAGATATCCCACTGGATCGCTCCTTGCA
GATAAAGGTCTTGCTTCCAATAACAATCGTCACCATATTGATGAATCTCT
TACGAATTAATCTGTCGAAACTTATCTTGCGCGAACCTCCAACAAGTGTG
ATGAAAACCCGCGACTCAAACCGCCTCCACCGCGCACAGAATCTACGAAA
AAATGGTCATGTCATCTCCCGAATTCAGTATGAAACACGTCGATTCTATC
TCGTGAAAGAAGAAGGCCCACTGCACAAACCGCCGCCTAACATGTCCGCC
ATGTCCCCACTGATGAACCCAGAAAGCCTGGCAAACCAAGTCATCTCGAT
CATAATCAGCGTAGCGCCCCAAATGATCCTCGGAGCCTGGGCACGCTTCA
CGTTTGCAGGCGTTGCCGTCTGCAGGTTGCCGTTCACTCTCACCCCGCGG
TTCAGATCGATGCTGCAGAGCGGACTCGATATGAGCGCTCAAAACCTTGA
CGTGAGCTACGTAAGCGCTTTGAGCTGGTATGTGCTCAACCTCTTCGGCA
ACACTGGTCTGTTGTCCCTCTTGAAAAATGCACCCACCGAGGATGATCTT
TTAATTCCAAATGCGTTGAACCAGATATCCATGAATGTCGCACCTGACAG
AATATTCTCTCAAGAACGTGAAGCCGTGCGCAAAACTTCACACAAGTGTC
ATCTCGATCAGTTCGAGCAAAAGTTGCTGAACATGTCCGCAAAGGATTTT
GGTTTGTACTGA
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protein sequence of Gvermi6744.t1

>Gvermi6744.t1 ID=Gvermi6744.t1|Name=Gvermi6744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
MALSDHTLDIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSV
MKTRDSNRLHRAQNLRKNGHVISRIQYETRRFYLVKEEGPLHKPPPNMSA
MSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPR
FRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTEDDL
LIPNALNQISMNVAPDRIFSQEREAVRKTSHKCHLDQFEQKLLNMSAKDF
GLY*
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mRNA from alignment at ScGOVlb_88:2139860..2140621-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6744.t1 ID=Gvermi6744.t1|Name=Gvermi6744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_88:2139860..2140621- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTGAGCGACCATACTCTAGATATCCCACTGGATCGCTCCTTGCA
GATAAAGGTCTTGCTTCCAATAACAATCGTCACCATATTGATGAATCTCT
TACGAATTAATCTGTCGAAACTTATCTTGCGCGAACCTCCAACAAGTGTG
ATGAAAACCCGCGACTCAAACCGCCTCCACCGCGCACAGAATCTACGAAA
AAATGGTCATGTCATCTCCCGAATTCAGTATGAAACACGTCGATTCTATC
TCGTGAAAGAAGAAGGCCCACTGCACAAACCGCCGCCTAACATGTCCGCC
ATGTCCCCACTGATGAACCCAGAAAGCCTGGCAAACCAAGTCATCTCGAT
CATAATCAGCGTAGCGCCCCAAATGATCCTCGGAGCCTGGGCACGCTTCA
CGTTTGCAGGCGTTGCCGTCTGCAGGTTGCCGTTCACTCTCACCCCGCGG
TTCAGATCGATGCTGCAGAGCGGACTCGATATGAGCGCTCAAAACCTTGA
CGTGAGCTACGTAAGCGCTTTGAGCTGGTATGTGCTCAACCTCTTCGGCA
ACACTGGTCTGTTGTCCCTCTTGAAAAATGCACCCACCGAGGATGATCTT
TTAATTCCAAATGCGTTGAACCAGATATCCATGAATGTCGCACCTGACAG
AATATTCTCTCAAGAACGTGAAGCCGTGCGCAAAACTTCACACAAGTGTC
ATCTCGATCAGTTCGAGCAAAAGTTGCTGAACATGTCCGCAAAGGATTTT
GGTTTGTACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2139860..2140621-

>Gvermi6744.t1 ID=Gvermi6744.t1|Name=Gvermi6744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=762bp|location=Sequence derived from alignment at ScGOVlb_88:2139860..2140621- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTTGAGCGACCATACTCTAGATATCCCACTGGATCGCTCCTTGCA
GATAAAGGTCTTGCTTCCAATAACAATCGTCACCATATTGATGAATCTCT
TACGAATTAATCTGTCGAAACTTATCTTGCGCGAACCTCCAACAAGTGTG
ATGAAAACCCGCGACTCAAACCGCCTCCACCGCGCACAGAATCTACGAAA
AAATGGTCATGTCATCTCCCGAATTCAGTATGAAACACGTCGATTCTATC
TCGTGAAAGAAGAAGGCCCACTGCACAAACCGCCGCCTAACATGTCCGCC
ATGTCCCCACTGATGAACCCAGAAAGCCTGGCAAACCAAGTCATCTCGAT
CATAATCAGCGTAGCGCCCCAAATGATCCTCGGAGCCTGGGCACGCTTCA
CGTTTGCAGGCGTTGCCGTCTGCAGGTTGCCGTTCACTCTCACCCCGCGG
TTCAGATCGATGCTGCAGAGCGGACTCGATATGAGCGCTCAAAACCTTGA
CGTGAGCTACGTAAGCGCTTTGAGCTGGTATGTGCTCAACCTCTTCGGCA
ACACTGGTCTGTTGTCCCTCTTGAAAAATGCACCCACCGAGGATGATCTT
TTAATTCCAAATGCGTTGAACCAGATATCCATGAATGTCGCACCTGACAG
AATATTCTCTCAAGAACGTGAAGCCGTGCGCAAAACTTCACACAAGTGTC
ATCTCGATCAGTTCGAGCAAAAGTTGCTGAACATGTCCGCAAAGGATTTT
GGTTTGTACTGA
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