Gvermi6744.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6744.t1
Unique NameGvermi6744.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length254
Homology
BLAST of Gvermi6744.t1 vs. uniprot
Match: A0A2V3J3P1_9FLOR (ER membrane protein complex subunit 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3P1_9FLOR)

HSP 1 Score: 330 bits (846), Expect = 1.170e-111
Identity = 164/250 (65.60%), Postives = 207/250 (82.80%), Query Frame = 0
Query:    4 SDHTLDIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKTRDSNRLHRAQNLRKNGHVISRIQYETRRFYLVKEEGPLHKPPPNMSAMSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTEDDLLIPNALNQISMNVAPDRIFSQEREAVRKTSHKCHLDQFEQKLLNMSAKDFGLY 253
            +  TLDI LDRSLQ+ VLLPITIVTILMNLL+ NL KLI+REPPT++ KTRD+N L+RAQ  RKN   +S+IQ+E RR+Y  + +GPL+KPP   SAMSPLMNP+SLANQV+S++I++ PQM+LG WAR+TFAGV VCRLPFTLTPRFR MLQSGLD+++Q+LD+ YVS+LSWYVLNLFGN GLLSL+      +D+L+PNAL+QISMNVA D++F+QER A++K++H C LD FEQ++L M    FG Y
Sbjct:    4 TGETLDIHLDRSLQLWVLLPITIVTILMNLLKRNLLKLIVREPPTTLHKTRDANLLNRAQTFRKNCFAVSKIQFEARRYYFSQGKGPLYKPPVRASAMSPLMNPDSLANQVLSVVINIIPQMLLGVWARYTFAGVVVCRLPFTLTPRFRPMLQSGLDIASQSLDLRYVSSLSWYVLNLFGNAGLLSLVSTGSDYEDILVPNALSQISMNVAADKVFAQERAAIQKSTHSCRLDDFEQRVLLMPLDQFGKY 253          
BLAST of Gvermi6744.t1 vs. uniprot
Match: R7Q1Z4_CHOCR (ER membrane protein complex subunit 3 n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7Q1Z4_CHOCR)

HSP 1 Score: 253 bits (646), Expect = 2.850e-81
Identity = 127/246 (51.63%), Postives = 182/246 (73.98%), Query Frame = 0
Query:    7 TLDIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKTRDSNRLHRAQNLRKNGHVISRIQYETRRFYLVKEEGPLHKPPPNMSAMSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTEDDLLIPNALNQISMNVAPDRIFSQEREAVRKTSHKCHLDQFEQKLLNMSAKDFGL 252
            ++DIPLD  L++ VLLPI I T+LM L+R N++ L+ +EPPT++ K RD+  L R+  LR+N   I+  Q+  RR YL   EG LH      SA++ +MNPESLANQ++S+++++ P M++G WAR+ FAG+AVCRLPFTLTPRFR MLQSG++++ QNLDVSYVSALSWY+L++FGN GLLSL+    ++D + +P+  +QIS+N+APD++F+QEREA+ K  HK  + Q E  LL +  + F +
Sbjct:    8 SIDIPLDPLLRVWVLLPIWIATLLMGLVRRNVTALMTKEPPTTLFKHRDAGYLKRSVKLRQNFSAIAYEQFAARRQYLAGPEGVLHVAKKEKSALTAIMNPESLANQIMSVVMAIVPHMVMGTWARYMFAGMAVCRLPFTLTPRFRPMLQSGIELAGQNLDVSYVSALSWYLLSMFGNGGLLSLISKGHSDDFVFVPSVASQISLNMAPDKVFAQEREALGKIVHKHTMGQEEDALLMIDPESFAV 253          
BLAST of Gvermi6744.t1 vs. uniprot
Match: A0A7S1XFD9_9RHOD (ER membrane protein complex subunit 3 (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFD9_9RHOD)

HSP 1 Score: 158 bits (399), Expect = 4.370e-44
Identity = 90/206 (43.69%), Postives = 133/206 (64.56%), Query Frame = 0
Query:   10 IPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKTRDSNRLHRAQNLRKNGHVISRIQYETRRFYLVKEEGPLHKPPPN-MSAMSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSL-LKNAPTEDDLLIPNALNQISMNV 213
            + LD  ++  VLLPI+I T +M +LR+ LS+ ++REP   + + RD+  + R   ++++G ++   Q   RR + VKE+G + +   N  SA   LM+PE L+ + I +I S  PQM+ GAW RF F G AVCRLPF    RFR+MLQSG++++ ++LDV+YVSALSWY++NLFGN  L  L + +  TE+    PN LNQ  M +
Sbjct:   28 VSLDPRIRTWVLLPISIATFVMGILRMYLSRWLMREPRVVLHRVRDAGLIARWMAIQRDGGILPEEQLAMRRHWFVKEDGGVFREERNPRSAHMMLMDPEMLSQKTIELICSAVPQMLFGAWVRFFFGGFAVCRLPFGPPQRFRAMLQSGIEIAGRDLDVAYVSALSWYIINLFGNQCLFMLFMSHEATEEPRGPPNDLNQTMMKL 233          
BLAST of Gvermi6744.t1 vs. uniprot
Match: A0A7S0G2H7_9RHOD (ER membrane protein complex subunit 3 (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G2H7_9RHOD)

HSP 1 Score: 134 bits (337), Expect = 1.080e-34
Identity = 74/188 (39.36%), Postives = 121/188 (64.36%), Query Frame = 0
Query:    9 DIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKTRDSNRLHRAQNLRKNGHVISRIQYETR-RFYLVKEEGPLHKPPPNMSAMSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAP 195
            D+ LD  ++  VL+P+ IVT  M ++  +L  L+ R P     K R+   L R    ++N  V+   Q+ +R  F++  ++  L++P P  S ++  M+P+ +A+Q+   ++S  PQM+ GA+ R+TF G  VC++PF L  RF SMLQSG+++++++LDV+YVSALSWYVLNLFG  G+  L+ ++P
Sbjct:   34 DLHLDVRIRDWVLIPVAIVTFCMGIMLQSLGILVRRPPKIHQHKIREGATLTRLGQFKRNAGVLPPDQFASRLAFFVEGDDAFLNQPKPEKSFLNSFMSPDFMASQLTESMLSFLPQMVFGAFIRYTFGGFTVCKVPFPLPQRFGSMLQSGIELASRDLDVTYVSALSWYVLNLFGYQGVYRLVLSSP 221          
BLAST of Gvermi6744.t1 vs. uniprot
Match: A0A7S3BER3_9VIRI (ER membrane protein complex subunit 3 n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BER3_9VIRI)

HSP 1 Score: 124 bits (312), Expect = 5.260e-31
Identity = 83/249 (33.33%), Postives = 134/249 (53.82%), Query Frame = 0
Query:    3 LSDHTLDIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKTRDSNRLHRAQNLRKNGHVISRIQYETRRFYLV-KEEGPLHKPPPNMSAMSPLMN-PESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTE---DDLLIPNALNQISMNVAPDRIFSQEREAVRKTSHK-CHLDQFEQKLLNM 245
            +  H + + LD +++  VLLPIT V  L+ LLR  + +L   EP   +   ++   + RAQ LR NG  +    Y +R+ +   KE G L K   +++  + +M+ P  + + +   +  + PQM+ GAW  F F G  + ++PF LT RFR+MLQ G+D+++  LDV+YVS+LSWY LNLFG  GL  L+    +E   D  L+      + M +   + F+ E + +    H    +D FE + L +
Sbjct:    1 MGGHAVAVMLDPAIRAWVLLPITFVMFLIGLLRHFVMQLTKAEPKVDLDNIKEGQTVMRAQWLRTNGVFLPEAAYASRKAHFAHKEHGVLRKETQSVNPQAAMMSDPTMMMDMMKKNVHMIVPQMLTGAWVNFFFTGFVIAKIPFPLTQRFRTMLQRGIDLAS--LDVTYVSSLSWYFLNLFGLRGLNQLVLGRASEEIDDTKLMGMQQQMMGMGMDTSKAFAAELQQMEFMRHNPAVMDGFEPRALKL 247          
BLAST of Gvermi6744.t1 vs. uniprot
Match: A0A5B8MLQ1_9CHLO (ER membrane protein complex subunit 3 n=2 Tax=Chloropicon TaxID=2302914 RepID=A0A5B8MLQ1_9CHLO)

HSP 1 Score: 123 bits (308), Expect = 1.290e-30
Identity = 83/237 (35.02%), Postives = 135/237 (56.96%), Query Frame = 0
Query:   12 LDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKTRDSNRL-HRAQNLRKNGHVISRIQYETRR-FYLVKEEGP-LHKPPPNMSAMSPLMN-PESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTEDDLLIPNALNQISMNVAP------DRIFSQEREAVRKTSHKCHLDQF 238
            LD +++  V++PIT   +L+ +LR  +SKL +R   T  +KT  + +L  R+Q LR +   ++R  +  R+ F+  KE+G  L K  P+++    +M+ P  L++ +   +  + PQ + GAW  F F+G  V ++PF LT +F+ MLQ G+D+S+  LDV+Y+S+LSWY LNLFG  GLL L+    T DD  +     Q+SM   P        +F  E++ +    H   +D+F
Sbjct:    4 LDPNVRNWVMIPITFAMLLIGVLRHLVSKL-MRGSSTPKIKTIQAKQLIQRSQYLRAHSGFLNRAAFNQRKEFFCEKEKGAFLQKVDPSLNPQQAMMSDPSMLSDMLTKNLTMIVPQFVTGAWVNFFFSGFVVAKVPFPLTQKFKLMLQRGVDLSS--LDVTYISSLSWYFLNLFGMQGLLQLIMGEKTFDDTQVMQ--QQMSMGAGPAGGLDAPNLFKAEKDQLEMMQHTYRVDKF 235          
BLAST of Gvermi6744.t1 vs. uniprot
Match: I1BY88_RHIO9 (ER membrane protein complex subunit 3 n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BY88_RHIO9)

HSP 1 Score: 123 bits (308), Expect = 4.310e-30
Identity = 91/256 (35.55%), Postives = 142/256 (55.47%), Query Frame = 0
Query:   12 LDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKT-RDSNRLHRAQNLRKNGHVISRIQYETRRFYLVK--EEGPLHKPPP----NMSAMSPLMNPESLANQVISI---IISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLL---KNAPTEDDLLI---PNALNQISMNVAPD---RIFSQEREAVRKTSHKCHLDQFEQKLLNMSAK 248
            LD +++  VL+P+ +V +L+ +LR +++ LI   P T   K+ R+S  L RA  LR  G++I +  +E R+ YL    E+G   K P     N +  +P+ +PE +   +  +   ++++ PQMI+  W  F F G  V +LPF LTPRF+SMLQSG+D   +++DV++VS+LSWY LNLFG   + SL+    NA   D   +   P  +  +     P    ++F  E+E V  T H   LD  E++LL    K
Sbjct:    9 LDPAIRDWVLIPVMVVMVLVGVLRHHITMLITGAPKTPQPKSIRESKALLRAMRLRTFGNMIPQHAFEVRKAYLADAFEKGDYLKNPQANKENTTPPNPMTDPEMMEGMMDGLKKQMMNMVPQMIIMGWINFFFQGFVVIKLPFPLTPRFKSMLQSGVD--TRDMDVTWVSSLSWYFLNLFGLGSVFSLILGDNNAAGVDMTAMSAMPGMMPGMGQPGQPQDFKKLFMAEKENVMITPHAWDLDDIEERLLKKYGK 262          
BLAST of Gvermi6744.t1 vs. uniprot
Match: L8GWH7_ACACA (ER membrane protein complex subunit 3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWH7_ACACA)

HSP 1 Score: 119 bits (299), Expect = 4.330e-29
Identity = 79/247 (31.98%), Postives = 134/247 (54.25%), Query Frame = 0
Query:    9 DIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKTRDSNRLHRAQNLRKNGHVISRIQYETRR-FYLVKEEGPLHKPPPNMSAMSPL----MNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLL---KNAPTEDDLLIPNALNQISMNVAPDRIFSQEREAVRKTSHKCHLDQFEQKLLNMSA 247
            D+ LD  ++  VLLPI +V  L+ +LR N+S L+  E    + K ++   L RA  +R NGH +    +  R+ F+    EG L     + SA +PL    M+P ++ + +   +  + PQ+++  W ++ F+G  + ++PF LT  FR MLQ G++++   L+V+YVS+LSWY LNLFG  G+ SL+    NA  +  L+           +   +++  ERE +    HK  ++  E++LLN  +
Sbjct:    4 DLVLDSRIRDWVLLPIALVMFLIAILRNNISLLLHSERKPELQKVQERQTLIRASRMRLNGHKLPLASFLQRKAFFNDAREGVLVMEEEDSSASNPLANPMMDPMNMVDMMKKNVTMLVPQLLIVGWVQYFFSGFVLVKIPFPLTLPFRGMLQRGIELAG--LEVTYVSSLSWYFLNLFGLRGINSLVLGEANAADDTKLMXXXXXXXXXXPIDTKKLYKAERENIDLVEHKWAVEDAEKRLLNQKS 248          
BLAST of Gvermi6744.t1 vs. uniprot
Match: A0A642US47_DIURU (ER membrane protein complex subunit 3 n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642US47_DIURU)

HSP 1 Score: 118 bits (296), Expect = 1.170e-28
Identity = 91/258 (35.27%), Postives = 133/258 (51.55%), Query Frame = 0
Query:    9 DIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMK-TRDSNRLHRAQNLRKNGHVISRIQYETRRFY----------LVKEEGPLHKPPPNMSAMSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTEDDLLIPNALNQISM--------NVAPDRIFSQEREAVRKTSHKCHLDQFEQKLLNMSA 247
            D+ LD  L+  VL+PI++V   + LLR +++ LI   P     K  R    L RAQ  R N  V+SR ++ TR+ Y          L K  G    P   MS ++   N E++ N +   +++  PQ ++ AW  F FAG  V +LPF LT  F+ MLQ G++    NLDV YVSA+SWY +NLFG   + +LL    T+   L+     Q  M        NV   R+F+ E E+++  SHK  LD   ++L++  A
Sbjct:    4 DLILDPQLKYWVLIPISVVMAAVGLLRGHVTYLISPTPKQQDSKEVRQGQFLKRAQAFRMNNSVLSRSEFSTRQQYYADKLTSPEYLAKVSGVDDDP---MSQLTDPANNEAITNMLKGNLMNYIPQTLIMAWVNFFFAGFVVMKLPFPLTEGFKGMLQQGIN--TPNLDVRYVSAISWYFVNLFGLRPIYALLTGDSTQASQLVGQMTQQTPMPNLGGPGSNV--QRVFNGEAESIQILSHKFVLDDVVERLVDELA 254          
BLAST of Gvermi6744.t1 vs. uniprot
Match: C5MFK2_CANTT (ER membrane protein complex subunit 3 n=2 Tax=Candida TaxID=1535326 RepID=C5MFK2_CANTT)

HSP 1 Score: 117 bits (294), Expect = 6.020e-28
Identity = 89/247 (36.03%), Postives = 135/247 (54.66%), Query Frame = 0
Query:    7 TLDIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSVMKT-RDSNRLHRAQNLRKNGHVISRIQYETRRFYLV----KEEGPLHKPPPN-----MSAMSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPRFRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTEDDLLIPNALNQISM-NV----AP--DRIFSQEREAVRKTSHKCHLD 236
            T D+ LD  L+  VLLPI++  +L+ LLR N + L+  +P     KT R+   LHRA+  R+N  V++   +E R+ Y +     +E    KP  N     M+A++P  N E+L       ++S  PQ ++ AW  + FAG  V +LPF LT  F++MLQSG++    +L+V YVS++SWY +NLFG   + SLL  +    +L+      Q  M N+    AP  D++F  E E ++  SHK   D
Sbjct:   50 TPDLLLDPQLKYWVLLPISVAMVLVGLLRSNATFLLQTQPKLEAYKTVREGQFLHRARCFRENNSVLNDSDFEIRKKYFIDKLNSDEFIAKKPAANGAEDPMAALNPGSN-EALMQMAKGNLMSYIPQTVIMAWVNYFFAGFVVMKLPFPLTDGFKNMLQSGVN--TPDLNVRYVSSISWYFVNLFGLKPIYSLLMGSDEAAELMQQQGQQQPQMPNLGGPGAPQADKVFKGEAENIQILSHKSVFD 293          
The following BLAST results are available for this feature:
BLAST of Gvermi6744.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3P1_9FLOR1.170e-11165.60ER membrane protein complex subunit 3 n=1 Tax=Grac... [more]
R7Q1Z4_CHOCR2.850e-8151.63ER membrane protein complex subunit 3 n=2 Tax=Chon... [more]
A0A7S1XFD9_9RHOD4.370e-4443.69ER membrane protein complex subunit 3 (Fragment) n... [more]
A0A7S0G2H7_9RHOD1.080e-3439.36ER membrane protein complex subunit 3 (Fragment) n... [more]
A0A7S3BER3_9VIRI5.260e-3133.33ER membrane protein complex subunit 3 n=1 Tax=Pras... [more]
A0A5B8MLQ1_9CHLO1.290e-3035.02ER membrane protein complex subunit 3 n=2 Tax=Chlo... [more]
I1BY88_RHIO94.310e-3035.55ER membrane protein complex subunit 3 n=1 Tax=Rhiz... [more]
L8GWH7_ACACA4.330e-2931.98ER membrane protein complex subunit 3 n=1 Tax=Acan... [more]
A0A642US47_DIURU1.170e-2835.27ER membrane protein complex subunit 3 n=1 Tax=Diut... [more]
C5MFK2_CANTT6.020e-2836.03ER membrane protein complex subunit 3 n=2 Tax=Cand... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002809Integral membrane protein EMC3/TMCO1-likeSMARTSM01415DUF106_2coord: 9..196
e-value: 4.6E-38
score: 142.5
IPR002809Integral membrane protein EMC3/TMCO1-likePFAMPF01956EMC3_TMCO1coord: 9..190
e-value: 3.7E-31
score: 108.1
IPR008568ER membrane protein complex subunit 3PANTHERPTHR13116UNCHARACTERIZEDcoord: 9..246
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..253
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availableTMHMMTMhelixcoord: 15..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2139860..2140621 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6744.t1Gvermi6744.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2139860..2140621 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6744.t1 ID=Gvermi6744.t1|Name=Gvermi6744.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
MALSDHTLDIPLDRSLQIKVLLPITIVTILMNLLRINLSKLILREPPTSV
MKTRDSNRLHRAQNLRKNGHVISRIQYETRRFYLVKEEGPLHKPPPNMSA
MSPLMNPESLANQVISIIISVAPQMILGAWARFTFAGVAVCRLPFTLTPR
FRSMLQSGLDMSAQNLDVSYVSALSWYVLNLFGNTGLLSLLKNAPTEDDL
LIPNALNQISMNVAPDRIFSQEREAVRKTSHKCHLDQFEQKLLNMSAKDF
GLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002809EMC3/TMCO1
IPR008568EMC3