Gvermi6715.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6715.t1
Unique Name	Gvermi6715.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	328

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2080433..2081416 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706114.1
PFAMs	CTP_transf_1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00055,RC00523
KEGG ko	ko:K00981,ko:K14163
KEGG Reaction	R01799,R03661,R05578
KEGG Pathway	ko00564,ko00860,ko00970,ko01100,ko01110,ko01120,ko04070,map00564,map00860,map00970,map01100,map01110,map01120,map04070
KEGG Module	M00093,M00121,M00359
GOs	GO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055035,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	6.43e-104
EggNOG OGs	COG0575@1\|root,KOG1440@2759\|Eukaryota
EC	2.7.7.41,6.1.1.15,6.1.1.17
Description	phosphatidate cytidylyltransferase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6715	Gvermi6715	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2080433..2081416 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6715.t1.start1	Gvermi6715.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2080433..2080435 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6715.t1.CDS1	Gvermi6715.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2080433..2081416 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6715.t1.exon1	Gvermi6715.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2080433..2081416 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6715.t1.stop1	Gvermi6715.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2081414..2081416 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6715.t1	Gvermi6715.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2080433..2081416 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2080433..2081416+
coding sequence from alignment at ScGOVlb_88:2080433..2081416+

mRNA sequence

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
LSAPDHELGRNPDDPSVPPRAAALPPAVPRFKVQRRIAVGFIMGAVVIAF
VFSGRWVFATGMLVISLTGLYEYYRMVAAKGHLPAYKMGLCVTAATLLSS
ACSPALADAVFPVGGTMICIYLLFRRRKIATIADISTTFMGLFYAGYLPS
YWIRLHEFNGALTQNFVAGVISFVWPTASFFQPTITVGSLIVFWTWLAGA
SADIGAFFVGRAYGKTRFSNISPKKTIEGAVAGFICSASVSVLGAYLLQW
PLWWATGAVYGITVGILGLCGDLFESCFKRDVGWKDSGSLFPGHGGMLDR
ADSYVLVAPLVYFFATRVLPFISRIVR*

spliced messenger RNA

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_88:2080433..2081416+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCCGCACCTGATCACGAGCTCGGACGCAACCCAGATGACCCCTCCGT
TcccccgcgcgccgccgcgctgccgcccgccgTCCCTCGCTTCAAGGTGC
AGCGCCGCATTGCCGTCGGCTTCATCATGGGCGCCGTCGTCATCGCGTTC
GTTTTTTCCGGCCGTTGGGTTTTCGCTACCGGCATGCTTGTCATCAGTCT
CACTGGTCTGTACGAGTACTACCGCATGGTTGCGGCCAAGGGCCATTTAC
CCGCCTACAAGATGGGCCTGTGCGTCACCGCCGCCACTCTGCTTTCCAGC
GCCTGCTCACCAGCGCTGGCCGATGCCGTTTTCCCCGTCGGCGGCACCAT
GATTTGCATTTACCTCTTGTTTCGACGCCGAAAGATAGCCACCATTGCCG
ACATCAGCACCACGTTTATGGGCCTGTTTTACGCGGGCTATCTCCCTAGT
TACTGGATTCGTTTGCATGAGTTCAACGGGGCCCTGACGCAAAATTTCGT
GGCGGGCGTCATATCGTTTGTATGGCCTACTGCATCATTCTTTCAACCCA
CAATCACCGTGGGCTCTCTCATTGTGTTTTGGACGTGGCTGGCGGGCGCC
AGTGCTGACATCGGCGCCTTTTTTGTGGGACGCGCCTACGGGAAGACCCG
CTTCAGCAACATATCGCCGAAGAAGACGATTGAGGGCGCCGTAGCGGGCT
TCATCTGCTCGGCTAGTGTGTCTGTTTTGGGGGCCTACCTGCTGCAATGG
CCCTTGTGGTGGGCCACTGGAGCTGTGTACGGCATCACGGTGGGCATTTT
GGGGCTTTGCGGCGATCTTTTTGAGAGCTGTTTCAAGCGCGATGTGGGCT
GGAAGGACAGCGGATCGCTGTTTCCCGGACACGGAGGCATGCTTGATCGC
GCCGATAGCTATGTATTGGTGGCACCTCTTGTTTATTTCTTTGCCACGCG
AGTGCTGCCGTTTATATCGCGCATCGTTCGATAG

protein sequence of Gvermi6715.t1

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
LSAPDHELGRNPDDPSVPPRAAALPPAVPRFKVQRRIAVGFIMGAVVIAF
VFSGRWVFATGMLVISLTGLYEYYRMVAAKGHLPAYKMGLCVTAATLLSS
ACSPALADAVFPVGGTMICIYLLFRRRKIATIADISTTFMGLFYAGYLPS
YWIRLHEFNGALTQNFVAGVISFVWPTASFFQPTITVGSLIVFWTWLAGA
SADIGAFFVGRAYGKTRFSNISPKKTIEGAVAGFICSASVSVLGAYLLQW
PLWWATGAVYGITVGILGLCGDLFESCFKRDVGWKDSGSLFPGHGGMLDR
ADSYVLVAPLVYFFATRVLPFISRIVR*

mRNA from alignment at ScGOVlb_88:2080433..2081416+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_88:2080433..2081416+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTCCGCACCTGATCACGAGCTCGGACGCAACCCAGATGACCCCTCCGT
TcccccgcgcgccgccgcgctgccgcccgccgTCCCTCGCTTCAAGGTGC
AGCGCCGCATTGCCGTCGGCTTCATCATGGGCGCCGTCGTCATCGCGTTC
GTTTTTTCCGGCCGTTGGGTTTTCGCTACCGGCATGCTTGTCATCAGTCT
CACTGGTCTGTACGAGTACTACCGCATGGTTGCGGCCAAGGGCCATTTAC
CCGCCTACAAGATGGGCCTGTGCGTCACCGCCGCCACTCTGCTTTCCAGC
GCCTGCTCACCAGCGCTGGCCGATGCCGTTTTCCCCGTCGGCGGCACCAT
GATTTGCATTTACCTCTTGTTTCGACGCCGAAAGATAGCCACCATTGCCG
ACATCAGCACCACGTTTATGGGCCTGTTTTACGCGGGCTATCTCCCTAGT
TACTGGATTCGTTTGCATGAGTTCAACGGGGCCCTGACGCAAAATTTCGT
GGCGGGCGTCATATCGTTTGTATGGCCTACTGCATCATTCTTTCAACCCA
CAATCACCGTGGGCTCTCTCATTGTGTTTTGGACGTGGCTGGCGGGCGCC
AGTGCTGACATCGGCGCCTTTTTTGTGGGACGCGCCTACGGGAAGACCCG
CTTCAGCAACATATCGCCGAAGAAGACGATTGAGGGCGCCGTAGCGGGCT
TCATCTGCTCGGCTAGTGTGTCTGTTTTGGGGGCCTACCTGCTGCAATGG
CCCTTGTGGTGGGCCACTGGAGCTGTGTACGGCATCACGGTGGGCATTTT
GGGGCTTTGCGGCGATCTTTTTGAGAGCTGTTTCAAGCGCGATGTGGGCT
GGAAGGACAGCGGATCGCTGTTTCCCGGACACGGAGGCATGCTTGATCGC
GCCGATAGCTATGTATTGGTGGCACCTCTTGTTTATTTCTTTGCCACGCG
AGTGCTGCCGTTTATATCGCGCATCGTTCGATAG

Coding sequence (CDS) from alignment at ScGOVlb_88:2080433..2081416+

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_88:2080433..2081416+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTCCGCACCTGATCACGAGCTCGGACGCAACCCAGATGACCCCTCCGT
TcccccgcgcgccgccgcgctgccgcccgccgTCCCTCGCTTCAAGGTGC
AGCGCCGCATTGCCGTCGGCTTCATCATGGGCGCCGTCGTCATCGCGTTC
GTTTTTTCCGGCCGTTGGGTTTTCGCTACCGGCATGCTTGTCATCAGTCT
CACTGGTCTGTACGAGTACTACCGCATGGTTGCGGCCAAGGGCCATTTAC
CCGCCTACAAGATGGGCCTGTGCGTCACCGCCGCCACTCTGCTTTCCAGC
GCCTGCTCACCAGCGCTGGCCGATGCCGTTTTCCCCGTCGGCGGCACCAT
GATTTGCATTTACCTCTTGTTTCGACGCCGAAAGATAGCCACCATTGCCG
ACATCAGCACCACGTTTATGGGCCTGTTTTACGCGGGCTATCTCCCTAGT
TACTGGATTCGTTTGCATGAGTTCAACGGGGCCCTGACGCAAAATTTCGT
GGCGGGCGTCATATCGTTTGTATGGCCTACTGCATCATTCTTTCAACCCA
CAATCACCGTGGGCTCTCTCATTGTGTTTTGGACGTGGCTGGCGGGCGCC
AGTGCTGACATCGGCGCCTTTTTTGTGGGACGCGCCTACGGGAAGACCCG
CTTCAGCAACATATCGCCGAAGAAGACGATTGAGGGCGCCGTAGCGGGCT
TCATCTGCTCGGCTAGTGTGTCTGTTTTGGGGGCCTACCTGCTGCAATGG
CCCTTGTGGTGGGCCACTGGAGCTGTGTACGGCATCACGGTGGGCATTTT
GGGGCTTTGCGGCGATCTTTTTGAGAGCTGTTTCAAGCGCGATGTGGGCT
GGAAGGACAGCGGATCGCTGTTTCCCGGACACGGAGGCATGCTTGATCGC
GCCGATAGCTATGTATTGGTGGCACCTCTTGTTTATTTCTTTGCCACGCG
AGTGCTGCCGTTTATATCGCGCATCGTTCGATAG