Gvermi6715.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6715.t1
Unique NameGvermi6715.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2080433..2081416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706114.1
PFAMsCTP_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00055,RC00523
KEGG koko:K00981,ko:K14163
KEGG ReactionR01799,R03661,R05578
KEGG Pathwayko00564,ko00860,ko00970,ko01100,ko01110,ko01120,ko04070,map00564,map00860,map00970,map01100,map01110,map01120,map04070
KEGG ModuleM00093,M00121,M00359
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055035,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue6.43e-104
EggNOG OGsCOG0575@1|root,KOG1440@2759|Eukaryota
EC2.7.7.41,6.1.1.15,6.1.1.17
Descriptionphosphatidate cytidylyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6715Gvermi6715Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2080433..2081416 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6715.t1.start1Gvermi6715.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2080433..2080435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6715.t1.CDS1Gvermi6715.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2080433..2081416 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6715.t1.exon1Gvermi6715.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2080433..2081416 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6715.t1.stop1Gvermi6715.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2081414..2081416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6715.t1Gvermi6715.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2080433..2081416 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
LSAPDHELGRNPDDPSVPPRAAALPPAVPRFKVQRRIAVGFIMGAVVIAF
VFSGRWVFATGMLVISLTGLYEYYRMVAAKGHLPAYKMGLCVTAATLLSS
ACSPALADAVFPVGGTMICIYLLFRRRKIATIADISTTFMGLFYAGYLPS
YWIRLHEFNGALTQNFVAGVISFVWPTASFFQPTITVGSLIVFWTWLAGA
SADIGAFFVGRAYGKTRFSNISPKKTIEGAVAGFICSASVSVLGAYLLQW
PLWWATGAVYGITVGILGLCGDLFESCFKRDVGWKDSGSLFPGHGGMLDR
ADSYVLVAPLVYFFATRVLPFISRIVR*
back to top

spliced messenger RNA

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_88:2080433..2081416+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCCGCACCTGATCACGAGCTCGGACGCAACCCAGATGACCCCTCCGT
TcccccgcgcgccgccgcgctgccgcccgccgTCCCTCGCTTCAAGGTGC
AGCGCCGCATTGCCGTCGGCTTCATCATGGGCGCCGTCGTCATCGCGTTC
GTTTTTTCCGGCCGTTGGGTTTTCGCTACCGGCATGCTTGTCATCAGTCT
CACTGGTCTGTACGAGTACTACCGCATGGTTGCGGCCAAGGGCCATTTAC
CCGCCTACAAGATGGGCCTGTGCGTCACCGCCGCCACTCTGCTTTCCAGC
GCCTGCTCACCAGCGCTGGCCGATGCCGTTTTCCCCGTCGGCGGCACCAT
GATTTGCATTTACCTCTTGTTTCGACGCCGAAAGATAGCCACCATTGCCG
ACATCAGCACCACGTTTATGGGCCTGTTTTACGCGGGCTATCTCCCTAGT
TACTGGATTCGTTTGCATGAGTTCAACGGGGCCCTGACGCAAAATTTCGT
GGCGGGCGTCATATCGTTTGTATGGCCTACTGCATCATTCTTTCAACCCA
CAATCACCGTGGGCTCTCTCATTGTGTTTTGGACGTGGCTGGCGGGCGCC
AGTGCTGACATCGGCGCCTTTTTTGTGGGACGCGCCTACGGGAAGACCCG
CTTCAGCAACATATCGCCGAAGAAGACGATTGAGGGCGCCGTAGCGGGCT
TCATCTGCTCGGCTAGTGTGTCTGTTTTGGGGGCCTACCTGCTGCAATGG
CCCTTGTGGTGGGCCACTGGAGCTGTGTACGGCATCACGGTGGGCATTTT
GGGGCTTTGCGGCGATCTTTTTGAGAGCTGTTTCAAGCGCGATGTGGGCT
GGAAGGACAGCGGATCGCTGTTTCCCGGACACGGAGGCATGCTTGATCGC
GCCGATAGCTATGTATTGGTGGCACCTCTTGTTTATTTCTTTGCCACGCG
AGTGCTGCCGTTTATATCGCGCATCGTTCGATAG
back to top

protein sequence of Gvermi6715.t1

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
LSAPDHELGRNPDDPSVPPRAAALPPAVPRFKVQRRIAVGFIMGAVVIAF
VFSGRWVFATGMLVISLTGLYEYYRMVAAKGHLPAYKMGLCVTAATLLSS
ACSPALADAVFPVGGTMICIYLLFRRRKIATIADISTTFMGLFYAGYLPS
YWIRLHEFNGALTQNFVAGVISFVWPTASFFQPTITVGSLIVFWTWLAGA
SADIGAFFVGRAYGKTRFSNISPKKTIEGAVAGFICSASVSVLGAYLLQW
PLWWATGAVYGITVGILGLCGDLFESCFKRDVGWKDSGSLFPGHGGMLDR
ADSYVLVAPLVYFFATRVLPFISRIVR*
back to top

mRNA from alignment at ScGOVlb_88:2080433..2081416+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_88:2080433..2081416+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTCCGCACCTGATCACGAGCTCGGACGCAACCCAGATGACCCCTCCGT
TcccccgcgcgccgccgcgctgccgcccgccgTCCCTCGCTTCAAGGTGC
AGCGCCGCATTGCCGTCGGCTTCATCATGGGCGCCGTCGTCATCGCGTTC
GTTTTTTCCGGCCGTTGGGTTTTCGCTACCGGCATGCTTGTCATCAGTCT
CACTGGTCTGTACGAGTACTACCGCATGGTTGCGGCCAAGGGCCATTTAC
CCGCCTACAAGATGGGCCTGTGCGTCACCGCCGCCACTCTGCTTTCCAGC
GCCTGCTCACCAGCGCTGGCCGATGCCGTTTTCCCCGTCGGCGGCACCAT
GATTTGCATTTACCTCTTGTTTCGACGCCGAAAGATAGCCACCATTGCCG
ACATCAGCACCACGTTTATGGGCCTGTTTTACGCGGGCTATCTCCCTAGT
TACTGGATTCGTTTGCATGAGTTCAACGGGGCCCTGACGCAAAATTTCGT
GGCGGGCGTCATATCGTTTGTATGGCCTACTGCATCATTCTTTCAACCCA
CAATCACCGTGGGCTCTCTCATTGTGTTTTGGACGTGGCTGGCGGGCGCC
AGTGCTGACATCGGCGCCTTTTTTGTGGGACGCGCCTACGGGAAGACCCG
CTTCAGCAACATATCGCCGAAGAAGACGATTGAGGGCGCCGTAGCGGGCT
TCATCTGCTCGGCTAGTGTGTCTGTTTTGGGGGCCTACCTGCTGCAATGG
CCCTTGTGGTGGGCCACTGGAGCTGTGTACGGCATCACGGTGGGCATTTT
GGGGCTTTGCGGCGATCTTTTTGAGAGCTGTTTCAAGCGCGATGTGGGCT
GGAAGGACAGCGGATCGCTGTTTCCCGGACACGGAGGCATGCTTGATCGC
GCCGATAGCTATGTATTGGTGGCACCTCTTGTTTATTTCTTTGCCACGCG
AGTGCTGCCGTTTATATCGCGCATCGTTCGATAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2080433..2081416+

>Gvermi6715.t1 ID=Gvermi6715.t1|Name=Gvermi6715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_88:2080433..2081416+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTCCGCACCTGATCACGAGCTCGGACGCAACCCAGATGACCCCTCCGT
TcccccgcgcgccgccgcgctgccgcccgccgTCCCTCGCTTCAAGGTGC
AGCGCCGCATTGCCGTCGGCTTCATCATGGGCGCCGTCGTCATCGCGTTC
GTTTTTTCCGGCCGTTGGGTTTTCGCTACCGGCATGCTTGTCATCAGTCT
CACTGGTCTGTACGAGTACTACCGCATGGTTGCGGCCAAGGGCCATTTAC
CCGCCTACAAGATGGGCCTGTGCGTCACCGCCGCCACTCTGCTTTCCAGC
GCCTGCTCACCAGCGCTGGCCGATGCCGTTTTCCCCGTCGGCGGCACCAT
GATTTGCATTTACCTCTTGTTTCGACGCCGAAAGATAGCCACCATTGCCG
ACATCAGCACCACGTTTATGGGCCTGTTTTACGCGGGCTATCTCCCTAGT
TACTGGATTCGTTTGCATGAGTTCAACGGGGCCCTGACGCAAAATTTCGT
GGCGGGCGTCATATCGTTTGTATGGCCTACTGCATCATTCTTTCAACCCA
CAATCACCGTGGGCTCTCTCATTGTGTTTTGGACGTGGCTGGCGGGCGCC
AGTGCTGACATCGGCGCCTTTTTTGTGGGACGCGCCTACGGGAAGACCCG
CTTCAGCAACATATCGCCGAAGAAGACGATTGAGGGCGCCGTAGCGGGCT
TCATCTGCTCGGCTAGTGTGTCTGTTTTGGGGGCCTACCTGCTGCAATGG
CCCTTGTGGTGGGCCACTGGAGCTGTGTACGGCATCACGGTGGGCATTTT
GGGGCTTTGCGGCGATCTTTTTGAGAGCTGTTTCAAGCGCGATGTGGGCT
GGAAGGACAGCGGATCGCTGTTTCCCGGACACGGAGGCATGCTTGATCGC
GCCGATAGCTATGTATTGGTGGCACCTCTTGTTTATTTCTTTGCCACGCG
AGTGCTGCCGTTTATATCGCGCATCGTTCGATAG
back to top