Gvermi6678.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6678.t1
Unique NameGvermi6678.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1911822..1912698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010252459.1
PFAMsSld5
Max annot lvl35493|Streptophyta
KEGG koko:K10733
KEGG ModuleM00286
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022402,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902292,GO:1902315,GO:1902969,GO:1902975,GO:1903047
Evalue1.12e-39
EggNOG OGsCOG5093@1|root,KOG4071@2759|Eukaryota,37M8S@33090|Viridiplantae,3G7T3@35493|Streptophyta
DescriptionDNA replication complex GINS protein
COG categoryL
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6678Gvermi6678Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1911822..1912698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6678.t1Gvermi6678.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1911822..1912698 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6678.t1.start1Gvermi6678.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1911822..1911824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6678.t1.CDS1Gvermi6678.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1911822..1911998 +
Gvermi6678.t1.CDS2Gvermi6678.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1912092..1912244 +
Gvermi6678.t1.CDS3Gvermi6678.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1912348..1912698 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6678.t1.exon1Gvermi6678.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1911822..1911998 +
Gvermi6678.t1.exon2Gvermi6678.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1912092..1912244 +
Gvermi6678.t1.exon3Gvermi6678.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1912348..1912698 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6678.t1.intron1Gvermi6678.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 1911999..1912091 +
Gvermi6678.t1.intron2Gvermi6678.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 1912245..1912347 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6678.t1.stop1Gvermi6678.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1912696..1912698 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6678.t1 ID=Gvermi6678.t1|Name=Gvermi6678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=227bp
MGVSTGVNLTQAHESELAFQRSEFFAEDELIDISPMVRFGVISLVRGNFG
PFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDE
LQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHS
NVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYEIHVTADGRGPLSDTN
SSTNPTSSTGYRPNAGRQLRRVARRE*
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spliced messenger RNA

>Gvermi6678.t1 ID=Gvermi6678.t1|Name=Gvermi6678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=681bp|location=Sequence derived from alignment at ScGOVlb_88:1911822..1912698+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTAAGCACAGGCGTGAATTTAACACAAGCACACGAGTCGGAACT
TGCTTTTCAGCGCTCAGAATTTTTCGCAGAGGATGAACTCATAGACATCA
GTCCCATGGTTAGATTTGGTGTAATCAGTCTCGTAAGAGGAAACTTCGGG
CCGTTTGAGCCCTCCCTCACCGTCAAGGTTCCTTTATGGCTTGCGCTCGC
ACTCAAGAAGGTTCAAAGATGCAAAATTATTCCACCTCGATGGCTGACGG
TCCGCAATGTCGAAAAATGCCTGTCTGACGAACGAGAGAATGAGGATGAA
TTGCAACCGATTCCCTTCTTCTTTTCCGAAATTTCTTCCCTTTTATTCCA
CCATGCACCCGATGATCTAGTGAACATTAACCACTTACGACGTTCAGTGG
AAGATTTAGCCAATGTTCGTGAGAGCAAAATGCGCAAGTGGATGCACTCA
AATGTTAGAGATCGTGTGAATGCTATCAAGGTGAACAACCTTTCCATGCA
TGAAATTAACAAGCACAGACCGGTTCTGACGCGTATTCTCAACAATCTGT
ATGAAATCCACGTCACGGCTGATGGTCGCGGACCTCTATCAGACACGAAT
TCGTCGACGAACCCTACATCATCGACCGGTTATCGTCCAAACGCTGGTCG
TCAATTGCGTCGCGTTGCTCGTCGAGAGTAA
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protein sequence of Gvermi6678.t1

>Gvermi6678.t1 ID=Gvermi6678.t1|Name=Gvermi6678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=227bp
MGVSTGVNLTQAHESELAFQRSEFFAEDELIDISPMVRFGVISLVRGNFG
PFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDE
LQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHS
NVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYEIHVTADGRGPLSDTN
SSTNPTSSTGYRPNAGRQLRRVARRE*
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mRNA from alignment at ScGOVlb_88:1911822..1912698+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6678.t1 ID=Gvermi6678.t1|Name=Gvermi6678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=877bp|location=Sequence derived from alignment at ScGOVlb_88:1911822..1912698+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGGTAAGCACAGGCGTGAATTTAACACAAGCACACGAGTCGGAACT
TGCTTTTCAGCGCTCAGAATTTTTCGCAGAGGATGAACTCATAGACATCA
GTCCCATGGTTAGATTTGGTGTAATCAGTCTCGTAAGAGGAAACTTCGGG
CCGTTTGAGCCCTCCCTCACCGTCAAGGTTCGTTTACATCACTCTATGCT
GTTCGAATCAATTTCCAAGAGCACTGACGTTTGAAAGTACACTTGGAAAC
TTTGCGTCTCATTTCAACAGGTTCCTTTATGGCTTGCGCTCGCACTCAAG
AAGGTTCAAAGATGCAAAATTATTCCACCTCGATGGCTGACGGTCCGCAA
TGTCGAAAAATGCCTGTCTGACGAACGAGAGAATGAGGATGAATTGCAAC
CGATTCCCTTCTTCTTTTCCGAAGTAAGTTTGAAAGGATTACCGCTCGGC
CCAAGCAGGAGAACACGGCGACGGTCACCACAATCCTAACCGTAACATTT
GGACACAACTCGATTCCGAGAAACAGATTTCTTCCCTTTTATTCCACCAT
GCACCCGATGATCTAGTGAACATTAACCACTTACGACGTTCAGTGGAAGA
TTTAGCCAATGTTCGTGAGAGCAAAATGCGCAAGTGGATGCACTCAAATG
TTAGAGATCGTGTGAATGCTATCAAGGTGAACAACCTTTCCATGCATGAA
ATTAACAAGCACAGACCGGTTCTGACGCGTATTCTCAACAATCTGTATGA
AATCCACGTCACGGCTGATGGTCGCGGACCTCTATCAGACACGAATTCGT
CGACGAACCCTACATCATCGACCGGTTATCGTCCAAACGCTGGTCGTCAA
TTGCGTCGCGTTGCTCGTCGAGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1911822..1912698+

>Gvermi6678.t1 ID=Gvermi6678.t1|Name=Gvermi6678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=681bp|location=Sequence derived from alignment at ScGOVlb_88:1911822..1912698+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGGTAAGCACAGGCGTGAATTTAACACAAGCACACGAGTCGGAACT
TGCTTTTCAGCGCTCAGAATTTTTCGCAGAGGATGAACTCATAGACATCA
GTCCCATGGTTAGATTTGGTGTAATCAGTCTCGTAAGAGGAAACTTCGGG
CCGTTTGAGCCCTCCCTCACCGTCAAGGTTCCTTTATGGCTTGCGCTCGC
ACTCAAGAAGGTTCAAAGATGCAAAATTATTCCACCTCGATGGCTGACGG
TCCGCAATGTCGAAAAATGCCTGTCTGACGAACGAGAGAATGAGGATGAA
TTGCAACCGATTCCCTTCTTCTTTTCCGAAATTTCTTCCCTTTTATTCCA
CCATGCACCCGATGATCTAGTGAACATTAACCACTTACGACGTTCAGTGG
AAGATTTAGCCAATGTTCGTGAGAGCAAAATGCGCAAGTGGATGCACTCA
AATGTTAGAGATCGTGTGAATGCTATCAAGGTGAACAACCTTTCCATGCA
TGAAATTAACAAGCACAGACCGGTTCTGACGCGTATTCTCAACAATCTGT
ATGAAATCCACGTCACGGCTGATGGTCGCGGACCTCTATCAGACACGAAT
TCGTCGACGAACCCTACATCATCGACCGGTTATCGTCCAAACGCTGGTCG
TCAATTGCGTCGCGTTGCTCGTCGAGAGTAA
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