Gvermi6678.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6678.t1
Unique NameGvermi6678.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length227
Homology
BLAST of Gvermi6678.t1 vs. uniprot
Match: A0A2V3IXM4_9FLOR (DNA replication complex GINS protein PSF2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXM4_9FLOR)

HSP 1 Score: 353 bits (905), Expect = 1.670e-121
Identity = 172/226 (76.11%), Postives = 197/226 (87.17%), Query Frame = 0
Query:    1 MGVSTGVNLTQAHESELAFQRSEFFAEDELIDISPMVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYEIHVTADGRGPLSDTNSSTNPTSSTGYRPNAGRQLRRVARRE 226
            MG +     TQAHESEL FQRSEFFAEDELI+I+PMVRFGVIS +RGNFGPFEPS+T  VPLWLALALKKV RCKIIPPRWLTVR+VE+ LS+E++NEDELQ IPF+FSEI+SLLFHHAPDDLV +++LRR +EDL N+RESKMRKWM +NVRDR NAIKVNNLSMHEIN HRPVLTR+L N+YEIHVT DG GPLS+TN+S+NP S +  RP  GRQLRRV RR+
Sbjct:    1 MGDTAAAKSTQAHESELTFQRSEFFAEDELIEINPMVRFGVISFIRGNFGPFEPSITTTVPLWLALALKKVHRCKIIPPRWLTVRSVEEYLSEEKDNEDELQSIPFYFSEIASLLFHHAPDDLVQVSNLRRLIEDLTNLRESKMRKWMQANVRDRANAIKVNNLSMHEINIHRPVLTRVLQNMYEIHVTTDGSGPLSETNTSSNPASESEPRPLPGRQLRRVIRRD 226          
BLAST of Gvermi6678.t1 vs. uniprot
Match: R7QAT9_CHOCR (DNA replication complex GINS protein PSF2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAT9_CHOCR)

HSP 1 Score: 294 bits (752), Expect = 3.120e-98
Identity = 148/218 (67.89%), Postives = 178/218 (81.65%), Query Frame = 0
Query:   10 TQAHESELAFQRSEFFAEDELIDISPMVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYEIHVTADGRGPLS--DTNSSTNPTSSTGYRPNAGRQLRRVARR 225
            T+A E+ELAFQR+EF AEDELI+I+PMV+  VI+L+RG FGPFEPS+T  VPLWLALAL+KV RCKI+PPRWLTVR +++ +S ERENE ELQ IPF+FSEI+SLL HHA DDLVN   LRR VEDL+N+R+SKMRKWM  NVRDRVNAIKVNNL++HEI+ HRP+LTR+L NLY IHV  D RG  S   TN S++ T ++  RP  GRQLRRV R+
Sbjct:    7 TEATEAELAFQRAEFLAEDELIEINPMVKSDVITLMRGEFGPFEPSITTTVPLWLALALRKVHRCKILPPRWLTVRELDRYISHERENEAELQAIPFYFSEIASLLLHHASDDLVNPGMLRRCVEDLSNIRDSKMRKWMQENVRDRVNAIKVNNLTLHEISVHRPILTRVLGNLYTIHVAPDTRGLSSTDSTNPSSDTTGASDTRPAQGRQLRRVIRK 224          
BLAST of Gvermi6678.t1 vs. uniprot
Match: R7QBK6_CHOCR (DNA replication complex GINS protein PSF2, the protein is not entire n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBK6_CHOCR)

HSP 1 Score: 165 bits (418), Expect = 3.870e-49
Identity = 78/111 (70.27%), Postives = 94/111 (84.68%), Query Frame = 0
Query:   36 MVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRK 146
            MV+  VI+L+RG FGPFEPS+T  VPLWLALAL+KV RCKI+PPRWLTVR +++ +S ERENE ELQ IPF+FS+I+SLL HHA DDLVN   LRR VEDL+N+R+SKMRK
Sbjct:    1 MVKSDVITLMRGEFGPFEPSITTTVPLWLALALRKVHRCKILPPRWLTVRELDRYISHERENEAELQAIPFYFSKIASLLLHHASDDLVNPGMLRRCVEDLSNIRDSKMRK 111          
BLAST of Gvermi6678.t1 vs. uniprot
Match: A0A0D6QZB7_ARACU (DNA replication complex GINS protein PSF2 n=2 Tax=Pinidae TaxID=3313 RepID=A0A0D6QZB7_ARACU)

HSP 1 Score: 150 bits (380), Expect = 4.170e-42
Identity = 87/203 (42.86%), Postives = 124/203 (61.08%), Query Frame = 0
Query:   23 EFFAEDELIDISPMVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYEIHVTADGRGPLSDTNSSTNPTSSTGYRPNAGRQLRRVARR 225
            EF AEDE+ +I P VR   ++++ G+FGPF P + VKVPLWLA+ALKK  +C+I PP W++V  + + L  ERE   E QP+PF + E+S LLF +A DD+ +I  +R  +ED+ NVR  K+   + S +  R +A+K+ NLS  E+N  RP + R L   Y+ H T D +G     + S+ PTS+        R  RRV RR
Sbjct:   18 EFLAEDEMTNIIPNVRMDALNMICGDFGPFRPQIPVKVPLWLAIALKKRGKCRIQPPDWMSVERLTQVLDSEREAPREFQPLPFHYVEMSRLLFDYARDDIPDIFLVRSLIEDIRNVRFHKVETGLES-LDSRTHAVKLKNLSAMEVNLVRPFIVRALQAFYK-HDTGDQQG----LDGSSQPTSTD-------RGARRVLRR 207          
BLAST of Gvermi6678.t1 vs. uniprot
Match: A0A1D1XVG8_9ARAE (DNA replication complex GINS protein PSF2 (Fragment) n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XVG8_9ARAE)

HSP 1 Score: 150 bits (379), Expect = 1.870e-41
Identity = 75/175 (42.86%), Postives = 111/175 (63.43%), Query Frame = 0
Query:   10 TQAHESELAFQRSEFFAEDELIDISPMVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLY 184
            +  H S  +    EF AEDE+++I P V+ G + ++ G+FGPF P + VKVPLWLA+A+KK  +C I PP WL++ N+ + L  ERE+  E QP+PF + EIS LLF HA DD+ +I  +R  +ED+ +VR  K+   + + +  R +A+K+ NLS  E+N  RP + R L   Y
Sbjct:   43 SDTHLSLFSSPEVEFLAEDEMVEIVPNVKMGALHMISGDFGPFFPQIAVKVPLWLAVAMKKRGKCAIRPPEWLSIDNLTQVLEAERESPREFQPLPFHYVEISRLLFDHAHDDIPDIYMVRSLIEDIKDVRFHKVETGLET-ISGRTHAVKLKNLSAMEVNIVRPFIVRTLQAFY 216          
BLAST of Gvermi6678.t1 vs. uniprot
Match: A0A7I8K1G2_SPIIN (DNA replication complex GINS protein PSF2 n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K1G2_SPIIN)

HSP 1 Score: 147 bits (370), Expect = 1.450e-40
Identity = 75/163 (46.01%), Postives = 106/163 (65.03%), Query Frame = 0
Query:   23 EFFAEDELIDISPMVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYE 185
            EF AEDE+++I P VR G + ++ G+FGPF P + VKVPLWLA+A+KK  +C I PP WL+V N+ + L  ERE+  E Q +PF + EIS LLF HA DD+ +I  +R  +ED+  VR  K+   + + +  R +A+K+ NLS  E+N  RP L R L   Y+
Sbjct:   18 EFLAEDEIVEIIPNVRMGALHMICGDFGPFLPQIAVKVPLWLAVAMKKRGKCAIRPPGWLSVDNLTQVLEAERESPREFQALPFHYVEISRLLFDHARDDIPDIYMVRSLIEDIKGVRFHKVETGLET-ISGRTHAVKLKNLSAMEVNIVRPFLVRTLQAFYK 179          
BLAST of Gvermi6678.t1 vs. uniprot
Match: A0A7S0ZFZ2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFZ2_9RHOD)

HSP 1 Score: 146 bits (368), Expect = 2.650e-40
Identity = 81/196 (41.33%), Postives = 121/196 (61.73%), Query Frame = 0
Query:   16 ELAFQRSEFFAEDELIDISPMVRFGV-ISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDR-VNAIKVNNLSMHEINKHRPVLTRILNNLYEI------HVTADGRGPLSDTNSST 203
            E+ F   E FA++ ++ I P       + L+RG+FG FE +L VKVPLW+A++LKK ++C I PP WL    +E  L  E++++  L  IP FF EIS+L+ HHAPDDL +   +R  V D++NVR SK+R ++ SN+  R VN +K N+L++ EI K RP   ++L NL ++      + T D    LSD N+ +
Sbjct:    1 EIRFLELEHFAKEHIVTIVPNFTLSEPLHLIRGDFGNFETALPVKVPLWVAISLKKSKKCNIHPPSWLQPTALETILRQEQDDKSNLSVIPEFFFEISALMLHHAPDDLRDPKRIRFLVADISNVRASKIRSFIQSNINTRDVNIVKFNHLTLMEITKLRPTTIQVLENLQQLAPQAKLNSTQDRLDALSDRNTQS 196          
BLAST of Gvermi6678.t1 vs. uniprot
Match: A0A835PC92_VANPL (DNA replication complex GINS protein PSF2 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PC92_VANPL)

HSP 1 Score: 145 bits (365), Expect = 8.150e-40
Identity = 73/172 (42.44%), Postives = 108/172 (62.79%), Query Frame = 0
Query:   13 HESELAFQRSEFFAEDELIDISPMVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLY 184
            H S  +    EF AEDELI+I P +R   ++++ G+FGPF P +  KVPLWLA+ALKK  +C + PP W++V  +   L  ERE+  E QP+PF + E+S LLF HAP+D+ +I  +R  +ED+ +VR  K+   + + +  R +A+K+ NLS  E+N  RP + R L   Y
Sbjct:    8 HLSIFSAAEVEFLAEDELIEIVPNMRMDALNMICGDFGPFLPQIATKVPLWLAVALKKRGKCSVRPPEWMSVDRLTLVLEAERESPREFQPLPFHYVEMSKLLFDHAPEDIPDIYMVRSLIEDIRDVRFHKVETGLET-ISGRTHAVKLKNLSAMEVNIVRPFMVRALQAFY 178          
BLAST of Gvermi6678.t1 vs. uniprot
Match: A0A388JJI9_CHABU (Sld5 domain-containing protein (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JJI9_CHABU)

HSP 1 Score: 142 bits (359), Expect = 5.310e-39
Identity = 78/190 (41.05%), Postives = 114/190 (60.00%), Query Frame = 0
Query:   23 EFFAEDELIDISPMVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYEIHVTADGRGPLSDTNSSTNPTSSTGYR 212
            EF AEDELI I P  R   + ++ G+FGPF P + VKVPLWLAL+LKK ++C +  P W+ V N+ + L +ERE+    Q +PF + EIS LLF +A +DL +   +R  +ED+ NVR +K++  +   +  + NA+K+NN+S  EIN  RP   + L   Y+  V         ++ +S  PTSST  R
Sbjct:    4 EFLAEDELISIVPNFRSDGMHMLCGDFGPFRPQIPVKVPLWLALSLKKRRKCTLQTPDWMNVDNLARVLEEERESTGVFQELPFHYIEISQLLFDNAIEDLCDHYKMRTLIEDIRNVRFNKIQNGLQQ-LEGKKNAVKLNNVSAMEINIIRPFFIKALERFYKYDVDYAKAAATDNSQASNAPTSSTSVR 192          
BLAST of Gvermi6678.t1 vs. uniprot
Match: A0A833QQX9_9POAL (DNA replication complex GINS protein PSF2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QQX9_9POAL)

HSP 1 Score: 142 bits (358), Expect = 1.210e-38
Identity = 71/163 (43.56%), Postives = 104/163 (63.80%), Query Frame = 0
Query:   23 EFFAEDELIDISPMVRFGVISLVRGNFGPFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDELQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHSNVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYE 185
            EF AEDE+I+I P +R   ++L+ G+FGPF P +  KVPLWLA+ALKK  +C I  P W++V  + + L  ERE+  E QP+PF + EIS LL  HA DD+  +  +R  +ED+ NVR  K+   + + +  R +A+K+ NLS  E+N  RP + R+L   Y+
Sbjct:   18 EFLAEDEMIEIVPNIRMDALNLLCGDFGPFLPQIACKVPLWLAVALKKRGKCSIRTPDWMSVEKLTQVLEAERESPREFQPLPFHYVEISRLLLDHAHDDIPEVYMVRSLIEDIRNVRFHKVESGLET-ISGRTHAVKLKNLSAMEVNIVRPFMVRVLQAFYK 179          
The following BLAST results are available for this feature:
BLAST of Gvermi6678.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXM4_9FLOR1.670e-12176.11DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
R7QAT9_CHOCR3.120e-9867.89DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
R7QBK6_CHOCR3.870e-4970.27DNA replication complex GINS protein PSF2, the pro... [more]
A0A0D6QZB7_ARACU4.170e-4242.86DNA replication complex GINS protein PSF2 n=2 Tax=... [more]
A0A1D1XVG8_9ARAE1.870e-4142.86DNA replication complex GINS protein PSF2 (Fragmen... [more]
A0A7I8K1G2_SPIIN1.450e-4046.01DNA replication complex GINS protein PSF2 n=2 Tax=... [more]
A0A7S0ZFZ2_9RHOD2.650e-4041.33Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A835PC92_VANPL8.150e-4042.44DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A388JJI9_CHABU5.310e-3941.05Sld5 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A833QQX9_9POAL1.210e-3843.56DNA replication complex GINS protein PSF2 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021151GINS subunit, domain APFAMPF05916Sld5coord: 59..168
e-value: 3.1E-16
score: 59.8
IPR007257DNA replication complex GINS protein Psf2PIRSFPIRSF028998GINS_PSF2coord: 7..221
e-value: 7.2E-54
score: 179.8
IPR007257DNA replication complex GINS protein Psf2PANTHERPTHR12772DNA REPLICATION COMPLEX GINS PROTEIN PSF2coord: 18..191
NoneNo IPR availableGENE3D3.40.5.50coord: 18..82
e-value: 9.0E-24
score: 85.3
NoneNo IPR availableGENE3D1.20.58.1020coord: 83..194
e-value: 1.8E-27
score: 97.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..226
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..214
NoneNo IPR availableCDDcd11712GINS_A_psf2coord: 72..190
e-value: 2.71506E-34
score: 116.94
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 19..76
IPR036224GINS, helical bundle-like domain superfamilySUPERFAMILY158573GINS helical bundle-likecoord: 78..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1911822..1912698 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6678.t1Gvermi6678.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 1911822..1912698 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6678.t1 ID=Gvermi6678.t1|Name=Gvermi6678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=227bp
MGVSTGVNLTQAHESELAFQRSEFFAEDELIDISPMVRFGVISLVRGNFG
PFEPSLTVKVPLWLALALKKVQRCKIIPPRWLTVRNVEKCLSDERENEDE
LQPIPFFFSEISSLLFHHAPDDLVNINHLRRSVEDLANVRESKMRKWMHS
NVRDRVNAIKVNNLSMHEINKHRPVLTRILNNLYEIHVTADGRGPLSDTN
SSTNPTSSTGYRPNAGRQLRRVARRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021151GINS_A
IPR007257GINS_Psf2
IPR036224GINS_bundle-like_dom_sf