Gvermi3541.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3541.t1
Unique NameGvermi3541.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3130637..3134753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35673
Preferred namerps2
PFAMsATP-synt_A,Ribosomal_S2
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02108,ko:K02967,ko:K03046
KEGG TC3.A.2.1
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00190,ko00195,ko00230,ko00240,ko01100,ko03010,ko03020,map00190,map00195,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00157,M00178,M00179,M00183
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0031974,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.06e-115
EggNOG OGsCOG0052@1|root,KOG0832@2759|Eukaryota
EC2.7.7.6
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko00194,ko01000,ko03011,ko03021,ko03110,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3541Gvermi3541Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3130637..3134753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3541.t1Gvermi3541.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3130637..3134753 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3541.t1.start1Gvermi3541.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3130637..3130639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3541.t1.CDS1Gvermi3541.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3130637..3131318 +
Gvermi3541.t1.CDS2Gvermi3541.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3134056..3134753 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3541.t1.exon1Gvermi3541.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3130637..3131318 +
Gvermi3541.t1.exon2Gvermi3541.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3134056..3134753 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3541.t1.intron1Gvermi3541.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3131319..3134055 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3541.t1.stop1Gvermi3541.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3134751..3134753 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3541.t1 ID=Gvermi3541.t1|Name=Gvermi3541.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=460bp
MMAFSGARANISQVRQLVGMRGLMADPQGQIIDLPISSNFREGLTVTDYF
ISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIRETNCNTAKGIILE
AMIDNRKTLISLNQALIGRVLAEDLVDEVNCKLIATANTEISPELAEKIV
TSGISSVLVRSPITCESVKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVFTGELAQTIIIMSIVSLSELLEAGAHFGHQARR
WNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGT
KRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEES
SGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTA
IQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSII
EGTSYTSHK*
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spliced messenger RNA

>Gvermi3541.t1 ID=Gvermi3541.t1|Name=Gvermi3541.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_41:3130637..3134753+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCATTCTCTGGTGCAAGAGCTAATATTTCACAAGTTAGACAATT
AGTTGGTATGAGAGGTTTAATGGCTGATCCACAAGGTCAAATTATTGATT
TACCTATATCGAGTAATTTTAGGGAAGGTTTAACAGTAACAGATTACTTC
ATTTCTTCTTATGGAGCTAGAAAAGGTTTAGTTGATACAGCTTTACGTAC
AGCTGATTCTGGTTATTTAACTCGTCGGCTTGTAGATGTCGCACAAGATG
TAATTATAAGAGAAACTAACTGTAATACTGCAAAGGGTATTATACTTGAA
GCTATGATAGATAATAGAAAAACTTTGATCTCTTTAAATCAGGCTTTAAT
TGGTCGTGTATTAGCAGAAGACTTGGTTGATGAAGTTAATTGTAAATTAA
TAGCTACGGCAAATACAGAAATATCACCTGAATTAGCTGAAAAAATTGTT
ACTTCAGGTATATCTAGTGTCTTAGTAAGATCACCTATTACATGTGAGTC
TGTAAAATCAGTATGTCAGTCATGTTATGGATGGAATTTGGCACATGGTA
GAATTGTTGATTTGGGAGAAGCTGTTGGTATTATTGCTGCTCAATCTATT
GGTGAACCTGGTACTCAACTAACCATGAGGACTTTTCATACAGGTGGAGT
TTTCACAGGAGAATTAGCCCAAACTATAATTATCATGTCAATTGTTTCAT
TAAGTGAATTACTAGAAGCGGGTGCTCACTTTGGGCACCAGGCTAGAAGA
TGGAATCCCAAAATGTTTCCATATATCTATACCGAGAGAAATGGTGTACA
TATTATAGATTTAGTCCAAACAGCTCAATTATTAACAGAAGCCTGCCAAT
TCATTCGCAATGCAGCTCAAGAAGGAAAAAAATTTTTGTTCTTAGGCACG
AAAAGACAAGCTGCAGGAGTAATTGCAGAACAGGCTATACGTTCTGATTC
TTATTATATTAATCAAAGATGGTTAGGTGGTATGTTAACTAATTGGATGA
CAATTAAATCAAGGGTTGAACGTTTAAAAAAACTAGAAACAGAGGAAAGC
TCGGGCATAATTGATATTCTTCCTAAGAAAGAAGCTGCGATTAGTCGTAG
AGAGTTAGAAAAACTAAGAAAAAATTTGAATGGTATTAAGAATATGAGTA
AGTTACCTGATTTCATTGTGGTTGTAGATCAAAAACGTGAAACAACAGCT
ATTCAAGAGTGTGTTAAATTAGGTATACCTATTATTTGTATATTAGATAC
AAATTGTAATCCAGAGATTATAGACATTCCAATACCAGCAAATGATGATG
CTATTAGATCTATTAAACTGATTATTAGTAAAATAGCTGATTCTATAATA
GAAGGTACAAGTTATACTTCACATAAATAG
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protein sequence of Gvermi3541.t1

>Gvermi3541.t1 ID=Gvermi3541.t1|Name=Gvermi3541.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=460bp
MMAFSGARANISQVRQLVGMRGLMADPQGQIIDLPISSNFREGLTVTDYF
ISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIRETNCNTAKGIILE
AMIDNRKTLISLNQALIGRVLAEDLVDEVNCKLIATANTEISPELAEKIV
TSGISSVLVRSPITCESVKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVFTGELAQTIIIMSIVSLSELLEAGAHFGHQARR
WNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGT
KRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEES
SGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTA
IQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSII
EGTSYTSHK*
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mRNA from alignment at ScGOVlb_41:3130637..3134753+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3541.t1 ID=Gvermi3541.t1|Name=Gvermi3541.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4117bp|location=Sequence derived from alignment at ScGOVlb_41:3130637..3134753+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGCATTCTCTGGTGCAAGAGCTAATATTTCACAAGTTAGACAATT
AGTTGGTATGAGAGGTTTAATGGCTGATCCACAAGGTCAAATTATTGATT
TACCTATATCGAGTAATTTTAGGGAAGGTTTAACAGTAACAGATTACTTC
ATTTCTTCTTATGGAGCTAGAAAAGGTTTAGTTGATACAGCTTTACGTAC
AGCTGATTCTGGTTATTTAACTCGTCGGCTTGTAGATGTCGCACAAGATG
TAATTATAAGAGAAACTAACTGTAATACTGCAAAGGGTATTATACTTGAA
GCTATGATAGATAATAGAAAAACTTTGATCTCTTTAAATCAGGCTTTAAT
TGGTCGTGTATTAGCAGAAGACTTGGTTGATGAAGTTAATTGTAAATTAA
TAGCTACGGCAAATACAGAAATATCACCTGAATTAGCTGAAAAAATTGTT
ACTTCAGGTATATCTAGTGTCTTAGTAAGATCACCTATTACATGTGAGTC
TGTAAAATCAGTATGTCAGTCATGTTATGGATGGAATTTGGCACATGGTA
GAATTGTTGATTTGGGAGAAGCTGTTGGTATTATTGCTGCTCAATCTATT
GGTGAACCTGGTACTCAACTAACCATGAGGACTTTTCATACAGGTGGAGT
TTTCACAGGAGAATTAGCCCAAACTATAATTAGTTCTTCTGGTTTTCAAA
TAGAATATCCAAATGACATAATCATAAGTGATACACGAACTCGTCATGGT
GATCATGCTTTTTTAGTGGAAAAAGATATTAAGCTTAAATTATTGCATTC
TAATAAAAAACAGACAAGCTTACCTTTAGTAAAAGGTTCATTATTATTTG
TAAAAAACTTGTCTTATATAAAAGCTGGACAAATTATTGCTGAATACCCC
ATAAGCAGTAGAATTGTTACGGAAAAAGCTCAAAAATCTGTTTTAGCAGA
TTTTTCTGGAAGTGTTTGCTCAATGGATTTATATTTAAATGAAATACAAA
ATGAGCAAAAAACTTTTAAAAATGTTAATAAAGGTGGTATAATTTGGATC
TTGTCTGGACATGTTTTTTCCATTCCATATGATACACAATTAATGATCTC
TGAAGATGATTTTATTTATGAAAATCATTTAATTGGTAAGACTGAATTTG
TTAGCCGTTATAGTGGAAGAATTCGTATTTCAAGAAAAAAACAGGATCTT
ACACAAGATATAATTATTATTACATCTTCTAAGACATATATTAATATAGA
TGTTTTAACAAAATTGTATAATGGATATACTAATTATATTCTATTAATTG
ATCGACAAGATCAATTTATTTTAAAGACTTTACCTAATCAAATTATTGTT
AATCAACAGTTAATAGCAGAGTTGATTACTAATATTTACCGCACAAATAC
AGGAGGAATTATAAAGTATCTGGATTTATCTGTATCTGATAAAAAAACAG
ATATTTCTAATAAAAAAGATTACTATAATATTATTGATGGCGGTTATATA
TTATGGATATCAGAAGAGACACATGAAATCAATAAAGATATATCATTGCT
ACTGATTAAGCATGGGCAGTTTATAGATGAAGGTACAGAGATAGTAAAAA
ATATTTTTACTAATACTAAAGGTATTATTGATATTGTGCAAAAAGAAGGG
ATTGTTAGAGAGGTTATTATTAAGCCAGGTATATTATATCCATATTCTGG
GAATTATGATTCTAAATCTAAATCTAGAGGTTTTTTAAGACCAGGTGAGA
TTATTGCTGATAATTTAAAAACAGATAAGTTAGTTTATTGGGAATATTTT
TATATAAACAATCAAAAGTATATTTTGATCAGGCCAGTAATTGTATATTC
AATTCCAAGCAAAACTGTAGATTTTAAATATTCTGAAGACTCTTTTAATA
GTGATATATGTAGTTTAAAATTAGTAAAGCGTATTTATTTTAGAGATGGG
GAAAGAATAAAATCAGTATCAGGTATAGATATTATAAAGACTTATTTAAT
AGCAGATTTAAATACAGATTGTTCCAATTTAACATGCACTTTACAAGTTA
ATACAGATACCGTGAACAAATCTATTTCAAGGATGAGAATTATCACAACA
GATAAAGTATCCTTAAAAGTTAAAAATGATATAACTAGTATGAAAGATCT
TTATACAAAAACTCGCTTGCTAGTGAAGAATAATGAATATGTAGAAAGCG
GTACTATATTAGCACATACTGAGCTATTTTCTTTCTATCAAGGTCAAGTA
GTTTCTATACAGCGAAATCAGTCCTCGAATCCACGAATTTTGTTAGTAAC
TTCCTTGGATACAAAAGTTTTTTCTATCAAAAAAAATCAAAATATTAAAG
TAAACATAAATGATTTTGTTTATGCTGGAGATGAGATTGCTAATGGTATT
ATTTCGTATAACTCTGGAAGAGTGACTTGTATTACAGATAATCAAATTAC
TATTCGTATAGGACAACCATATTTAATATCTAAGGGTTCTTTTTTACATG
TTAATAATTATGCCTTGATTCAAAGAGGAGAGAGTATTGCAACATTGATC
TTTGAAAGATTTAAAACAGGCGATATCGTGCAAGGTTTACCAAGAATAGA
GGAGATTTTAGAAGCCCGTAGAAAATCTGATGTAGTGTTTAATCCACATA
TGGTCTTAGATTCTAAATTTCGTGAATATTTAAATCAAGGTTTACATTTA
TATGATGCAACAAGGCTAAGTTTGTTAAGTTTACAACTATACCTAGTTAA
GGAATTGCAATTAGTTTATCAGTCTCAAGGTGTAGAAATTGCTGATAAAC
ATATTGAAGTTATCGTGAGACAAATGACTTCAAAAGTAAAGATTGAAAAT
GGGGGTGATACTCATCATTTGCCGGGGGAAATCATCGAACTGCAAAAAAT
AGAAATAACGAATAAATCTCTACGACTAGCTTCTAAAGAAGAAGCATTAT
ATTATCCTATTTTGCTAGGAATTACTAAAGCATCATTAAATACAGAAAGC
TTTATATCTGCAGCAAGCTTCCAAGAAACGACAAAAGTATTAACAGATGC
AGCAATCTCAGGAAAATTAGATTGGCTAAAAGGCTTAAAAGAAAATGTTA
TCATAGGGCGTTTAATACCTGCTGGTACCGGTTTCAATATTTATAATAAT
ACTCAATTTAATTACCAAAATAACGAACATTCTAATGAGAATAATTTGTT
GTCACTGTCTAAAAATAAAAATGCTAAAGAACTAAATTTCGAAGATATCA
TTGTTGATGATAGAAATATACATATTTATTCTCAAAATAATAACTAATAA
TTTATCTTATCATTTTGATTGAATACGTTGTGTTATTATGGTTTACATAT
TAACATAAATTCTATTTTGGTCTTTTATTTAACTTTATCCATACTGTCTT
TATATAATTATTTAATCAGTCATGTCAATTGTTTCATTAAGTGAATTACT
AGAAGCGGGTGCTCACTTTGGGCACCAGGCTAGAAGATGGAATCCCAAAA
TGTTTCCATATATCTATACCGAGAGAAATGGTGTACATATTATAGATTTA
GTCCAAACAGCTCAATTATTAACAGAAGCCTGCCAATTCATTCGCAATGC
AGCTCAAGAAGGAAAAAAATTTTTGTTCTTAGGCACGAAAAGACAAGCTG
CAGGAGTAATTGCAGAACAGGCTATACGTTCTGATTCTTATTATATTAAT
CAAAGATGGTTAGGTGGTATGTTAACTAATTGGATGACAATTAAATCAAG
GGTTGAACGTTTAAAAAAACTAGAAACAGAGGAAAGCTCGGGCATAATTG
ATATTCTTCCTAAGAAAGAAGCTGCGATTAGTCGTAGAGAGTTAGAAAAA
CTAAGAAAAAATTTGAATGGTATTAAGAATATGAGTAAGTTACCTGATTT
CATTGTGGTTGTAGATCAAAAACGTGAAACAACAGCTATTCAAGAGTGTG
TTAAATTAGGTATACCTATTATTTGTATATTAGATACAAATTGTAATCCA
GAGATTATAGACATTCCAATACCAGCAAATGATGATGCTATTAGATCTAT
TAAACTGATTATTAGTAAAATAGCTGATTCTATAATAGAAGGTACAAGTT
ATACTTCACATAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:3130637..3134753+

>Gvermi3541.t1 ID=Gvermi3541.t1|Name=Gvermi3541.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1380bp|location=Sequence derived from alignment at ScGOVlb_41:3130637..3134753+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGCATTCTCTGGTGCAAGAGCTAATATTTCACAAGTTAGACAATT
AGTTGGTATGAGAGGTTTAATGGCTGATCCACAAGGTCAAATTATTGATT
TACCTATATCGAGTAATTTTAGGGAAGGTTTAACAGTAACAGATTACTTC
ATTTCTTCTTATGGAGCTAGAAAAGGTTTAGTTGATACAGCTTTACGTAC
AGCTGATTCTGGTTATTTAACTCGTCGGCTTGTAGATGTCGCACAAGATG
TAATTATAAGAGAAACTAACTGTAATACTGCAAAGGGTATTATACTTGAA
GCTATGATAGATAATAGAAAAACTTTGATCTCTTTAAATCAGGCTTTAAT
TGGTCGTGTATTAGCAGAAGACTTGGTTGATGAAGTTAATTGTAAATTAA
TAGCTACGGCAAATACAGAAATATCACCTGAATTAGCTGAAAAAATTGTT
ACTTCAGGTATATCTAGTGTCTTAGTAAGATCACCTATTACATGTGAGTC
TGTAAAATCAGTATGTCAGTCATGTTATGGATGGAATTTGGCACATGGTA
GAATTGTTGATTTGGGAGAAGCTGTTGGTATTATTGCTGCTCAATCTATT
GGTGAACCTGGTACTCAACTAACCATGAGGACTTTTCATACAGGTGGAGT
TTTCACAGGAGAATTAGCCCAAACTATAATTATCATGTCAATTGTTTCAT
TAAGTGAATTACTAGAAGCGGGTGCTCACTTTGGGCACCAGGCTAGAAGA
TGGAATCCCAAAATGTTTCCATATATCTATACCGAGAGAAATGGTGTACA
TATTATAGATTTAGTCCAAACAGCTCAATTATTAACAGAAGCCTGCCAAT
TCATTCGCAATGCAGCTCAAGAAGGAAAAAAATTTTTGTTCTTAGGCACG
AAAAGACAAGCTGCAGGAGTAATTGCAGAACAGGCTATACGTTCTGATTC
TTATTATATTAATCAAAGATGGTTAGGTGGTATGTTAACTAATTGGATGA
CAATTAAATCAAGGGTTGAACGTTTAAAAAAACTAGAAACAGAGGAAAGC
TCGGGCATAATTGATATTCTTCCTAAGAAAGAAGCTGCGATTAGTCGTAG
AGAGTTAGAAAAACTAAGAAAAAATTTGAATGGTATTAAGAATATGAGTA
AGTTACCTGATTTCATTGTGGTTGTAGATCAAAAACGTGAAACAACAGCT
ATTCAAGAGTGTGTTAAATTAGGTATACCTATTATTTGTATATTAGATAC
AAATTGTAATCCAGAGATTATAGACATTCCAATACCAGCAAATGATGATG
CTATTAGATCTATTAAACTGATTATTAGTAAAATAGCTGATTCTATAATA
GAAGGTACAAGTTATACTTCACATAAATAG
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