Gvermi3541.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi3541.t1
Unique NameGvermi3541.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length460
Homology
BLAST of Gvermi3541.t1 vs. uniprot
Match: A0A345U8Z1_9FLOR (30S ribosomal protein S2, chloroplastic n=1 Tax=Agarophyton vermiculophyllum TaxID=2608709 RepID=A0A345U8Z1_9FLOR)

HSP 1 Score: 456 bits (1172), Expect = 3.140e-158
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:  229 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTSYTSHK 459
            MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTSYTSHK
Sbjct:    1 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTSYTSHK 231          
BLAST of Gvermi3541.t1 vs. uniprot
Match: A0A5N6NLV6_9ASTR (DNA-directed RNA polymerase n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NLV6_9ASTR)

HSP 1 Score: 470 bits (1210), Expect = 5.400e-153
Identity = 239/462 (51.73%), Postives = 325/462 (70.35%), Query Frame = 0
Query:    2 MAFSGARANISQVRQLVGMRGLMADPQGQIIDLPISSNFREGLTVTDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIRETNCNTAKGIILEAMIDNRKTLISLNQALIGRVLAEDLVDEVNCKLIATANTEISPELAEKIVTSGISSVLVRSPITCESVKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGELAQTIIIMSI--VSLSELL--EAGAHFGHQA------RRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGT 453
            M+FSGAR N SQV QLVGMRGLM+DPQGQ+IDLPI SN REGL++T+Y IS YGARKG+VDTA+RT+D+GYLTRRLV+V Q +++R T+C T +GI +          I + Q LIGRVLA+D+   +  + IAT N +I   L  + +T     + +R+P TC S   +CQ CYG + AH  +V+LGEAVGIIA QSIGEPGTQLT+RTFHTGGVFTG  A+ +   S   +  +E L        GH A       +WNPKM PYI  +R G+HI +L +TA+ L+EAC  + +AA  GK+FL +GTK + A  +A  AIR+  +Y+N++WLGGMLTNW T ++R+ + + L TE+ +G ++ LPK++AA+ +R+L  L+  L GIK M+ LPD +++VDQ  E TA+QEC+ LGIP IC++DTNC+P++ DI IPANDDAI SI+LI++K+  +I   T
Sbjct:  214 MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAIRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGMMADRIFI-QTLIGRVLADDIY--IGSRCIATRNQDIGVGLVNRFITFRAQPISIRTPFTCRSTSWICQLCYGRSPAHDDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCSRDLKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKEADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQHEEYTALQECITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICSAT 672          
BLAST of Gvermi3541.t1 vs. uniprot
Match: RR2_GRATL (30S ribosomal protein S2, chloroplastic n=2 Tax=Agarophyton TaxID=2510776 RepID=RR2_GRATL)

HSP 1 Score: 423 bits (1088), Expect = 1.800e-145
Identity = 207/231 (89.61%), Postives = 227/231 (98.27%), Query Frame = 0
Query:  229 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTSYTSHK 459
            MSIVSLSELLEAGAHFGHQARRWNP+MFPYIYTERNG+HIIDLVQTAQLLTEACQFIR+A+QEGKKFLFLGTKRQAAGVIAEQAIRS+SYY+NQRWLGGMLTNWMTIKSRVERL++LE +E +G+ID+LPKKEAAI+RREL+KLRKNLNGIKNMS+LPDFIVVVDQKRETTAIQEC+KLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIIS+IADSIIEG++Y  +K
Sbjct:    1 MSIVSLSELLEAGAHFGHQARRWNPRMFPYIYTERNGIHIIDLVQTAQLLTEACQFIRDASQEGKKFLFLGTKRQAAGVIAEQAIRSNSYYVNQRWLGGMLTNWMTIKSRVERLQRLEMDEQAGLIDMLPKKEAAINRRELDKLRKNLNGIKNMSRLPDFIVVVDQKRETTAIQECIKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISRIADSIIEGSTYALNK 231          
BLAST of Gvermi3541.t1 vs. uniprot
Match: A0A345U8D5_9FLOR (30S ribosomal protein S2, chloroplastic n=2 Tax=Gracilariaceae TaxID=31469 RepID=A0A345U8D5_9FLOR)

HSP 1 Score: 415 bits (1067), Expect = 2.580e-142
Identity = 201/229 (87.77%), Postives = 223/229 (97.38%), Query Frame = 0
Query:  229 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTSYTS 457
            MSIVSLSELL+AG HFGHQARRWNPKMFPYIYTERNG+HIIDLVQTAQLLT+ACQFI+ A+Q+GK+FLFLGTKRQAAGVIAEQAIRS+SYYINQRWLGGMLTNWMTIKSRV+RLKKLE EE SG++DILPKKEA+++R+ELEKLRKNLNGIK+M+KLPDF+V+VDQKRETTAIQECVKLGIP ICILDTNCNPEIIDIPIPANDDAIRSIKLI+SKIADSIIEG +Y+S
Sbjct:    1 MSIVSLSELLKAGTHFGHQARRWNPKMFPYIYTERNGIHIIDLVQTAQLLTDACQFIKEASQQGKRFLFLGTKRQAAGVIAEQAIRSNSYYINQRWLGGMLTNWMTIKSRVDRLKKLEIEEKSGLLDILPKKEASVNRKELEKLRKNLNGIKDMNKLPDFVVIVDQKRETTAIQECVKLGIPTICILDTNCNPEIIDIPIPANDDAIRSIKLIMSKIADSIIEGANYSS 229          
BLAST of Gvermi3541.t1 vs. uniprot
Match: A0A345U7T2_GRAGA (30S ribosomal protein S2, chloroplastic n=23 Tax=Gracilariaceae TaxID=31469 RepID=A0A345U7T2_GRAGA)

HSP 1 Score: 415 bits (1067), Expect = 3.200e-142
Identity = 202/226 (89.38%), Postives = 221/226 (97.79%), Query Frame = 0
Query:  229 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTS 454
            MSI+SLSELLEAGAHFGHQ+RRWNPKMFPYIYTERNG+HIIDLVQTAQLLTEAC+FIR+A+++GKKFLFLGTKRQAAGVIAEQAIRS+SYYINQRWLGG+LTNWMTIKSRV+RL+KLETEE SGIIDILPKKEA+I R+ELEKLRKNLNGIKNM+KLPDF++VVDQKRETTAIQEC+KLGIP ICILDTNCNPEI+DIPIPANDDAIRSIKLII KIADSIIEG S
Sbjct:    1 MSIISLSELLEAGAHFGHQSRRWNPKMFPYIYTERNGIHIIDLVQTAQLLTEACRFIRDASRDGKKFLFLGTKRQAAGVIAEQAIRSNSYYINQRWLGGILTNWMTIKSRVDRLQKLETEEDSGIIDILPKKEASIHRKELEKLRKNLNGIKNMTKLPDFVIVVDQKRETTAIQECIKLGIPTICILDTNCNPEIVDIPIPANDDAIRSIKLIIGKIADSIIEGAS 226          
BLAST of Gvermi3541.t1 vs. uniprot
Match: A0A345U8Z2_9FLOR (DNA-directed RNA polymerase subunit beta'' n=1 Tax=Agarophyton vermiculophyllum TaxID=2608709 RepID=A0A345U8Z2_9FLOR)

HSP 1 Score: 439 bits (1130), Expect = 1.670e-139
Identity = 228/230 (99.13%), Postives = 228/230 (99.13%), Query Frame = 0
Query:    1 MMAFSGARANISQVRQLVGMRGLMADPQGQIIDLPISSNFREGLTVTDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIRETNCNTAKGIILEAMIDNRKTLISLNQALIGRVLAEDLVDEVNCKLIATANTEISPELAEKIVTSGISSVLVRSPITCESVKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGELAQTIIIMS 230
            MMAFSGARANISQVRQLVGMRGLMADPQGQIIDLPISSNFREGLTVTDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIRETNCNTAKGIILEAMIDNRKTLISLNQALIGRVLAEDLVDEVNCKLIATANTEISPELAEKIVTSGISSVLVRSPITCESVKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGELAQTII  S
Sbjct:  132 MMAFSGARANISQVRQLVGMRGLMADPQGQIIDLPISSNFREGLTVTDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIRETNCNTAKGIILEAMIDNRKTLISLNQALIGRVLAEDLVDEVNCKLIATANTEISPELAEKIVTSGISSVLVRSPITCESVKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGELAQTIISSS 361          
BLAST of Gvermi3541.t1 vs. uniprot
Match: UPI001D128D1E (ribosomal protein S2 n=1 Tax=Hydropuntia urvillei TaxID=2873519 RepID=UPI001D128D1E)

HSP 1 Score: 407 bits (1047), Expect = 2.790e-139
Identity = 200/227 (88.11%), Postives = 217/227 (95.59%), Query Frame = 0
Query:  229 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTSY 455
            MSIVSLSELL+AG HFGHQARRWNPKMFPYIYTERNG+HIIDLVQTAQLLTEACQ IR A+Q+GKKFLFLGTKRQAAGVIAEQAIRS+SYY+NQRWLGGMLTNWMTIKSRV RL+KLE EE SG+ID LPKKEA+ +RRELEKLRKNL+GIKNM+KLPDF+VVVDQKRE TAIQEC+KLGIPIICILD+NCNPEIID+PIPANDDAIRSIKLIISKIADSIIEG +Y
Sbjct:    1 MSIVSLSELLKAGVHFGHQARRWNPKMFPYIYTERNGIHIIDLVQTAQLLTEACQIIRRASQQGKKFLFLGTKRQAAGVIAEQAIRSNSYYVNQRWLGGMLTNWMTIKSRVNRLQKLEIEEESGLIDKLPKKEASRNRRELEKLRKNLSGIKNMNKLPDFVVVVDQKREITAIQECIKLGIPIICILDSNCNPEIIDVPIPANDDAIRSIKLIISKIADSIIEGANY 227          
BLAST of Gvermi3541.t1 vs. uniprot
Match: A0A345U778_9FLOR (30S ribosomal protein S2, chloroplastic n=2 Tax=Gracilaria TaxID=2774 RepID=A0A345U778_9FLOR)

HSP 1 Score: 407 bits (1046), Expect = 4.260e-139
Identity = 200/229 (87.34%), Postives = 220/229 (96.07%), Query Frame = 0
Query:  229 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTSYTS 457
            MSI+SLSELLEAGAHFGHQARRW+PKMFPYIYTERNG+HIIDLVQT+QLLTEAC+FIR+A+ +GKKFLFLGTKRQAAGVIAEQAIRS+SYYINQRWLGGMLTNWMTIKSRVERL+KLE EE +GI+DILPKKEA+I RRELEKLRKNLNGIK+M KLPDF+++VDQKRETTAIQEC+KLGIP I ILDTNCNPEIIDIPIPANDDAIRSIKLIISK+ADSIIEG + TS
Sbjct:    1 MSIISLSELLEAGAHFGHQARRWDPKMFPYIYTERNGIHIIDLVQTSQLLTEACRFIRDASSKGKKFLFLGTKRQAAGVIAEQAIRSNSYYINQRWLGGMLTNWMTIKSRVERLQKLEIEEEAGIMDILPKKEASIYRRELEKLRKNLNGIKDMKKLPDFVIIVDQKRETTAIQECIKLGIPTISILDTNCNPEIIDIPIPANDDAIRSIKLIISKMADSIIEGANSTS 229          
BLAST of Gvermi3541.t1 vs. uniprot
Match: A0A0C5DZK2_GRALE (30S ribosomal protein S2, chloroplastic n=6 Tax=Gracilariopsis TaxID=2781 RepID=A0A0C5DZK2_GRALE)

HSP 1 Score: 404 bits (1037), Expect = 1.060e-137
Identity = 196/231 (84.85%), Postives = 219/231 (94.81%), Query Frame = 0
Query:  229 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTSYTSHK 459
            MSI+SL+ELLEAGAHFGHQARRWNPKMFPYIYTE NG+HIIDLVQTA LLTEACQFIRNAA+EGKKFLFLGTKRQAAGVIAEQAIRS+SYY+NQRWLGGMLTNW+TIKSRVERL++LE  E SG+I+ +PKKEA+++RRELEKLRK+L GI+NM  LPDF+++VDQKRETTAIQECVKLGIP ICILDTNCNPEIIDIPIPANDDAIRSIKLI+SKIADSIIEGT+Y S +
Sbjct:    1 MSIISLNELLEAGAHFGHQARRWNPKMFPYIYTESNGIHIIDLVQTAHLLTEACQFIRNAAKEGKKFLFLGTKRQAAGVIAEQAIRSNSYYVNQRWLGGMLTNWVTIKSRVERLQELEMAEESGVINSMPKKEASMTRRELEKLRKHLKGIQNMYNLPDFVIIVDQKRETTAIQECVKLGIPTICILDTNCNPEIIDIPIPANDDAIRSIKLIMSKIADSIIEGTNYKSEQ 231          
BLAST of Gvermi3541.t1 vs. uniprot
Match: A0A1C9CD55_CERJP (Ribosomal protein S2 n=2 Tax=Ceramium TaxID=31380 RepID=A0A1C9CD55_CERJP)

HSP 1 Score: 390 bits (1003), Expect = 1.320e-132
Identity = 188/226 (83.19%), Postives = 211/226 (93.36%), Query Frame = 0
Query:  229 MSIVSLSELLEAGAHFGHQARRWNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGTKRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEESSGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTAIQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSIIEGTS 454
            MSIVSL ELLEAG HFGHQ+RRWNPKMFPYIYTERNG+HIIDLVQTAQLL EAC FI+NAA EGK FLFLGTKRQAA +IA +AIRS+SYYINQRWLGGMLTNW+TIKSRVERLK LE +E+SG IDILPKKEA++ RRELEKL+K+LNGIK+M KLPD +V+VDQKRETTAIQEC+KLGIP ICILDTNCNPEIID+PIPANDDAIRSIKL+ISK+AD+I+EGT+
Sbjct:    1 MSIVSLEELLEAGVHFGHQSRRWNPKMFPYIYTERNGIHIIDLVQTAQLLNEACAFIKNAASEGKTFLFLGTKRQAASIIAREAIRSNSYYINQRWLGGMLTNWITIKSRVERLKYLENQENSGSIDILPKKEASMLRRELEKLKKHLNGIKSMKKLPDLVVIVDQKRETTAIQECIKLGIPTICILDTNCNPEIIDVPIPANDDAIRSIKLVISKLADAILEGTN 226          
The following BLAST results are available for this feature:
BLAST of Gvermi3541.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A345U8Z1_9FLOR3.140e-158100.0030S ribosomal protein S2, chloroplastic n=1 Tax=Ag... [more]
A0A5N6NLV6_9ASTR5.400e-15351.73DNA-directed RNA polymerase n=2 Tax=Mikania micran... [more]
RR2_GRATL1.800e-14589.6130S ribosomal protein S2, chloroplastic n=2 Tax=Ag... [more]
A0A345U8D5_9FLOR2.580e-14287.7730S ribosomal protein S2, chloroplastic n=2 Tax=Gr... [more]
A0A345U7T2_GRAGA3.200e-14289.3830S ribosomal protein S2, chloroplastic n=23 Tax=G... [more]
A0A345U8Z2_9FLOR1.670e-13999.13DNA-directed RNA polymerase subunit beta'' n=1 Tax... [more]
UPI001D128D1E2.790e-13988.11ribosomal protein S2 n=1 Tax=Hydropuntia urvillei ... [more]
A0A345U778_9FLOR4.260e-13987.3430S ribosomal protein S2, chloroplastic n=2 Tax=Gr... [more]
A0A0C5DZK2_GRALE1.060e-13784.8530S ribosomal protein S2, chloroplastic n=6 Tax=Gr... [more]
A0A1C9CD55_CERJP1.320e-13283.19Ribosomal protein S2 n=2 Tax=Ceramium TaxID=31380 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 362..382
NoneNo IPR availableGENE3D3.40.50.10490coord: 236..450
e-value: 4.3E-95
score: 318.9
NoneNo IPR availableGENE3D1.10.287.610Helix hairpin bincoord: 331..378
e-value: 4.3E-95
score: 318.9
NoneNo IPR availablePANTHERPTHR19376:SF58DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 1..238
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..240
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 424..438
score: 58.67
coord: 386..403
score: 38.55
coord: 403..414
score: 48.85
coord: 265..274
score: 57.54
coord: 315..332
score: 48.89
coord: 234..252
score: 47.21
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 237..452
e-value: 3.1E-91
score: 304.4
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 237..451
e-value: 1.21887E-101
score: 299.882
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 43..237
e-value: 6.1E-45
score: 153.7
IPR038120RNA polymerase Rpb1, funnel domain superfamilyGENE3D1.10.132.30coord: 1..67
e-value: 6.4E-34
score: 119.0
IPR007083RNA polymerase Rpb1, domain 4PFAMPF05000RNA_pol_Rpb1_4coord: 1..40
e-value: 4.0E-7
score: 29.9
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidTIGRFAMTIGR01011TIGR01011coord: 232..453
e-value: 2.2E-99
score: 329.2
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidHAMAPMF_00291_BRibosomal_S2_Bcoord: 230..453
score: 42.233105
IPR045867DNA-directed RNA polymerase, subunit beta-primePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..238
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00962RIBOSOMAL_S2_1coord: 234..245
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00963RIBOSOMAL_S2_2coord: 386..410
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILY52313Ribosomal protein S2coord: 234..454

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3130637..3134753 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3541.t1Gvermi3541.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_41 3130637..3134753 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi3541.t1 ID=Gvermi3541.t1|Name=Gvermi3541.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=460bp
MMAFSGARANISQVRQLVGMRGLMADPQGQIIDLPISSNFREGLTVTDYF
ISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIRETNCNTAKGIILE
AMIDNRKTLISLNQALIGRVLAEDLVDEVNCKLIATANTEISPELAEKIV
TSGISSVLVRSPITCESVKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVFTGELAQTIIIMSIVSLSELLEAGAHFGHQARR
WNPKMFPYIYTERNGVHIIDLVQTAQLLTEACQFIRNAAQEGKKFLFLGT
KRQAAGVIAEQAIRSDSYYINQRWLGGMLTNWMTIKSRVERLKKLETEES
SGIIDILPKKEAAISRRELEKLRKNLNGIKNMSKLPDFIVVVDQKRETTA
IQECVKLGIPIICILDTNCNPEIIDIPIPANDDAIRSIKLIISKIADSII
EGTSYTSHK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR007081RNA_pol_Rpb1_5
IPR038120Rpb1_funnel_sf
IPR007083RNA_pol_Rpb1_4
IPR005706Ribosomal_S2_bac/mit/plastid
IPR045867DNA-dir_RpoC_beta_prime
IPR018130Ribosomal_S2_CS
IPR023591Ribosomal_S2_flav_dom_sf