Gvermi13853.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13853.t1
Unique NameGvermi13853.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_647contigScGOVlb_647:379511..380559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5911.EAS02124
Preferred nameOST3
PFAMsOST3_OST6
Max annot lvl2759|Eukaryota
KEGG koko:K12669,ko:K19478
KEGG TC9.A.45.1.1,9.A.45.1.2,9.A.45.1.3,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0010483,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0022414,GO:0031224,GO:0031984,GO:0032501,GO:0032991,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0051703,GO:0051704,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
Evalue5.75e-12
EggNOG OGsKOG2603@1|root,KOG2603@2759|Eukaryota
Descriptionprotein N-linked glycosylation via asparagine
COG categoryI
BRITEko00000,ko00001,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13853Gvermi13853Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_647 379511..380559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13853.t1Gvermi13853.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_647 379511..380559 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13853.t1.start1Gvermi13853.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_647 379511..379513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13853.t1.CDS1Gvermi13853.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 379511..380437 +
Gvermi13853.t1.CDS2Gvermi13853.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_647 380530..380559 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13853.t1.exon1Gvermi13853.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 379511..380437 +
Gvermi13853.t1.exon2Gvermi13853.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_647 380530..380559 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13853.t1.intron1Gvermi13853.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_647 380438..380529 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13853.t1.stop1Gvermi13853.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_647 380557..380559 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13853.t1 ID=Gvermi13853.t1|Name=Gvermi13853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=319bp
MISADKGFANSLSKLEASKRLSSSGLIKLSISDFQDVVEISPRPYSLFVM
FSADRNLCEPCGAIAKRLAQIANEYNSLTPSKAASKPVFFSIVKVTLEDR
EFLMRYGLKHVPVFYHFKSGTSREYPRHLSDQSADNFPFQQVGYGANSMK
EFINSRSGSRLRVVRGNYQIPFVQTVKDYMPFILVTVAILAAGVVATGAY
KSPMLWFGIVVLIYIFSVGGGHYSWINNTPLASVNSNGDFEFISAGSRTQ
YVAEGFFVSAMCVSISILVILIQEMPSIIPNKSGQTFLGVFLVVMTAVAI
ITLVVLYQMKMPQYLHYN*
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spliced messenger RNA

>Gvermi13853.t1 ID=Gvermi13853.t1|Name=Gvermi13853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=957bp|location=Sequence derived from alignment at ScGOVlb_647:379511..380559+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATCCGCAGACAAGGGATTCGCTAATAGCTTGTCCAAGCTAGAAGC
CTCGAAACGTCTATCCTCTTCAGGGCTCATCAAACTCAGTATTTCAGATT
TTCAGGATGTCGTTGAAATATCACCCAGACCGTACTCACTTTTCGTCATG
TTCTCTGCAGACAGAAACCTATGCGAGCCATGTGGAGCTATTGCAAAACG
CCTTGCCCAAATTGCAAACGAATACAATTCCTTGACTCCCTCTAAAGCCG
CTTCAAAGCCAGTTTTCTTTTCCATCGTCAAGGTTACCTTGGAAGACCGA
GAGTTTCTCATGAGGTACGGTCTCAAGCACGTCCCAGTGTTCTATCACTT
TAAATCGGGAACGTCCCGGGAATATCCTCGACATTTGAGCGATCAATCCG
CGGATAATTTTCCGTTTCAACAAGTCGGCTACGGTGCAAATTCAATGAAG
GAATTCATCAACTCGAGAAGCGGATCTCGTCTTCGAGTTGTCCGAGGTAA
CTATCAAATTCCGTTCGTTCAGACAGTCAAAGACTACATGCCCTTTATTC
TTGTGACGGTTGCGATCCTTGCGGCAGGAGTAGTTGCAACAGGAGCGTAC
AAGAGCCCAATGTTGTGGTTTGGGATTGTTGTTCTCATATACATTTTCTC
TGTTGGAGGAGGACACTATTCTTGGATCAACAATACTCCCTTAGCCTCTG
TGAATTCGAATGGAGACTTCGAGTTCATTTCAGCTGGCTCTCGGACTCAG
TATGTTGCGGAAGGCTTTTTTGTATCAGCCATGTGTGTTAGCATTTCAAT
TCTTGTGATTCTCATTCAAGAAATGCCCTCAATAATTCCGAACAAGTCTG
GTCAGACGTTCCTTGGAGTGTTTCTGGTTGTAATGACTGCTGTGGCAATC
ATAACGTTGGTAGTCTTGTACCAAATGAAAATGCCGCAATACCTGCATTA
TAACTAA
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protein sequence of Gvermi13853.t1

>Gvermi13853.t1 ID=Gvermi13853.t1|Name=Gvermi13853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=319bp
MISADKGFANSLSKLEASKRLSSSGLIKLSISDFQDVVEISPRPYSLFVM
FSADRNLCEPCGAIAKRLAQIANEYNSLTPSKAASKPVFFSIVKVTLEDR
EFLMRYGLKHVPVFYHFKSGTSREYPRHLSDQSADNFPFQQVGYGANSMK
EFINSRSGSRLRVVRGNYQIPFVQTVKDYMPFILVTVAILAAGVVATGAY
KSPMLWFGIVVLIYIFSVGGGHYSWINNTPLASVNSNGDFEFISAGSRTQ
YVAEGFFVSAMCVSISILVILIQEMPSIIPNKSGQTFLGVFLVVMTAVAI
ITLVVLYQMKMPQYLHYN*
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mRNA from alignment at ScGOVlb_647:379511..380559+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13853.t1 ID=Gvermi13853.t1|Name=Gvermi13853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1049bp|location=Sequence derived from alignment at ScGOVlb_647:379511..380559+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATCCGCAGACAAGGGATTCGCTAATAGCTTGTCCAAGCTAGAAGC
CTCGAAACGTCTATCCTCTTCAGGGCTCATCAAACTCAGTATTTCAGATT
TTCAGGATGTCGTTGAAATATCACCCAGACCGTACTCACTTTTCGTCATG
TTCTCTGCAGACAGAAACCTATGCGAGCCATGTGGAGCTATTGCAAAACG
CCTTGCCCAAATTGCAAACGAATACAATTCCTTGACTCCCTCTAAAGCCG
CTTCAAAGCCAGTTTTCTTTTCCATCGTCAAGGTTACCTTGGAAGACCGA
GAGTTTCTCATGAGGTACGGTCTCAAGCACGTCCCAGTGTTCTATCACTT
TAAATCGGGAACGTCCCGGGAATATCCTCGACATTTGAGCGATCAATCCG
CGGATAATTTTCCGTTTCAACAAGTCGGCTACGGTGCAAATTCAATGAAG
GAATTCATCAACTCGAGAAGCGGATCTCGTCTTCGAGTTGTCCGAGGTAA
CTATCAAATTCCGTTCGTTCAGACAGTCAAAGACTACATGCCCTTTATTC
TTGTGACGGTTGCGATCCTTGCGGCAGGAGTAGTTGCAACAGGAGCGTAC
AAGAGCCCAATGTTGTGGTTTGGGATTGTTGTTCTCATATACATTTTCTC
TGTTGGAGGAGGACACTATTCTTGGATCAACAATACTCCCTTAGCCTCTG
TGAATTCGAATGGAGACTTCGAGTTCATTTCAGCTGGCTCTCGGACTCAG
TATGTTGCGGAAGGCTTTTTTGTATCAGCCATGTGTGTTAGCATTTCAAT
TCTTGTGATTCTCATTCAAGAAATGCCCTCAATAATTCCGAACAAGTCTG
GTCAGACGTTCCTTGGAGTGTTTCTGGTTGTAATGACTGCTGTGGCAATC
ATAACGTTGGTAGTCTTGTACCAAATGGTTTGTATTTTCTCCCCATTACC
GAATTATTCGTTTCTGAAATCCCTCTGCCGCAAGTGATATACTAACTTAC
CCAATTTTTATAAGCGCAGAAAATGCCGCAATACCTGCATTATAACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_647:379511..380559+

>Gvermi13853.t1 ID=Gvermi13853.t1|Name=Gvermi13853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=957bp|location=Sequence derived from alignment at ScGOVlb_647:379511..380559+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATCCGCAGACAAGGGATTCGCTAATAGCTTGTCCAAGCTAGAAGC
CTCGAAACGTCTATCCTCTTCAGGGCTCATCAAACTCAGTATTTCAGATT
TTCAGGATGTCGTTGAAATATCACCCAGACCGTACTCACTTTTCGTCATG
TTCTCTGCAGACAGAAACCTATGCGAGCCATGTGGAGCTATTGCAAAACG
CCTTGCCCAAATTGCAAACGAATACAATTCCTTGACTCCCTCTAAAGCCG
CTTCAAAGCCAGTTTTCTTTTCCATCGTCAAGGTTACCTTGGAAGACCGA
GAGTTTCTCATGAGGTACGGTCTCAAGCACGTCCCAGTGTTCTATCACTT
TAAATCGGGAACGTCCCGGGAATATCCTCGACATTTGAGCGATCAATCCG
CGGATAATTTTCCGTTTCAACAAGTCGGCTACGGTGCAAATTCAATGAAG
GAATTCATCAACTCGAGAAGCGGATCTCGTCTTCGAGTTGTCCGAGGTAA
CTATCAAATTCCGTTCGTTCAGACAGTCAAAGACTACATGCCCTTTATTC
TTGTGACGGTTGCGATCCTTGCGGCAGGAGTAGTTGCAACAGGAGCGTAC
AAGAGCCCAATGTTGTGGTTTGGGATTGTTGTTCTCATATACATTTTCTC
TGTTGGAGGAGGACACTATTCTTGGATCAACAATACTCCCTTAGCCTCTG
TGAATTCGAATGGAGACTTCGAGTTCATTTCAGCTGGCTCTCGGACTCAG
TATGTTGCGGAAGGCTTTTTTGTATCAGCCATGTGTGTTAGCATTTCAAT
TCTTGTGATTCTCATTCAAGAAATGCCCTCAATAATTCCGAACAAGTCTG
GTCAGACGTTCCTTGGAGTGTTTCTGGTTGTAATGACTGCTGTGGCAATC
ATAACGTTGGTAGTCTTGTACCAAATGAAAATGCCGCAATACCTGCATTA
TAACTAA
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