Gvermi12926.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12926.t1
Unique NameGvermi12926.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2139775..2140341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1145276.T479_17260
Preferred nameygaK
PFAMsBBE,FAD_binding_4
Max annot lvl91061|Bacilli
Evalue2.49e-10
EggNOG OGsCOG0277@1|root,COG0277@2|Bacteria,1U53V@1239|Firmicutes,4HDF7@91061|Bacilli,3IW9K@400634|Lysinibacillus
DescriptionBerberine and berberine like
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12926Gvermi12926Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2139775..2140341 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12926.t1.start1Gvermi12926.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2139775..2139777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12926.t1.CDS1Gvermi12926.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2139775..2140341 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12926.t1.exon1Gvermi12926.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2139775..2140341 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12926.t1.stop1Gvermi12926.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2140339..2140341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12926.t1Gvermi12926.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2139775..2140341 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12926.t1 ID=Gvermi12926.t1|Name=Gvermi12926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=189bp
MSKVSNALDVHAFFGPDGGWGERRASNVYKAMMQQRGTQGSDANDRIYQS
TFMARSGGKAPSRKFWQKYVDFCQTAYGRRSIPWVVCEMNLFNNAINRRR
NNAFAFRGANLITHYIVGGGTAAHKKFVYYWMKRHLAPFTTGVYVNYPER
ELSNYAQMYWGRNLPRLRKVKRRYDPGYFFMNAQSIPT*
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spliced messenger RNA

>Gvermi12926.t1 ID=Gvermi12926.t1|Name=Gvermi12926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=567bp|location=Sequence derived from alignment at ScGOVlb_425:2139775..2140341+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGGTGAGCAACGCGCTCGACGTTCACGCGTTCTTCGGGCCGGA
TGGGGGTTGGGGCGAGCGGCGCGCCTCCAACGTGTACAAGGCCATGATGC
AGCAGCGCGGGACGCAGGGGAGCGATGCGAACGACCGCATCTACCAATCG
ACGTTCATGGCGAGGAGTGGCGGCAAGGCGCCGTCGCGGAAGTTTTGGCA
AAAGTACGTGGACTTTTGCCAGACGGCGTATGGAAGACGCAGCATTCCGT
GGGTGGTCTGCGAGATGAACCTGTTCAACAACGCGATCAATAGGCGGCGT
AACAACGCATTCGCGTTCAGGGGGGCCAACCTGATCACGCACTACATTGT
GGGAGGCGGCACGGCGGCGCACAAGAAGTTTGTGTACTACTGGATGAAGC
GTCACCTGGCGCCGTTCACAACGGGCGTGTACGTGAACTACCCCGAGCGG
GAGCTGAGCAATTACGCGCAGATGTACTGGGGTCGCAACCTGCCACGTTT
GCGAAAGGTGAAAAGGAGGTACGATCCAGGGTACTTTTTCATGAACGCGC
AATCAATCCCCACGTAA
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protein sequence of Gvermi12926.t1

>Gvermi12926.t1 ID=Gvermi12926.t1|Name=Gvermi12926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=189bp
MSKVSNALDVHAFFGPDGGWGERRASNVYKAMMQQRGTQGSDANDRIYQS
TFMARSGGKAPSRKFWQKYVDFCQTAYGRRSIPWVVCEMNLFNNAINRRR
NNAFAFRGANLITHYIVGGGTAAHKKFVYYWMKRHLAPFTTGVYVNYPER
ELSNYAQMYWGRNLPRLRKVKRRYDPGYFFMNAQSIPT*
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mRNA from alignment at ScGOVlb_425:2139775..2140341+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12926.t1 ID=Gvermi12926.t1|Name=Gvermi12926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=567bp|location=Sequence derived from alignment at ScGOVlb_425:2139775..2140341+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAAGGTGAGCAACGCGCTCGACGTTCACGCGTTCTTCGGGCCGGA
TGGGGGTTGGGGCGAGCGGCGCGCCTCCAACGTGTACAAGGCCATGATGC
AGCAGCGCGGGACGCAGGGGAGCGATGCGAACGACCGCATCTACCAATCG
ACGTTCATGGCGAGGAGTGGCGGCAAGGCGCCGTCGCGGAAGTTTTGGCA
AAAGTACGTGGACTTTTGCCAGACGGCGTATGGAAGACGCAGCATTCCGT
GGGTGGTCTGCGAGATGAACCTGTTCAACAACGCGATCAATAGGCGGCGT
AACAACGCATTCGCGTTCAGGGGGGCCAACCTGATCACGCACTACATTGT
GGGAGGCGGCACGGCGGCGCACAAGAAGTTTGTGTACTACTGGATGAAGC
GTCACCTGGCGCCGTTCACAACGGGCGTGTACGTGAACTACCCCGAGCGG
GAGCTGAGCAATTACGCGCAGATGTACTGGGGTCGCAACCTGCCACGTTT
GCGAAAGGTGAAAAGGAGGTACGATCCAGGGTACTTTTTCATGAACGCGC
AATCAATCCCCACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2139775..2140341+

>Gvermi12926.t1 ID=Gvermi12926.t1|Name=Gvermi12926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=567bp|location=Sequence derived from alignment at ScGOVlb_425:2139775..2140341+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAAGGTGAGCAACGCGCTCGACGTTCACGCGTTCTTCGGGCCGGA
TGGGGGTTGGGGCGAGCGGCGCGCCTCCAACGTGTACAAGGCCATGATGC
AGCAGCGCGGGACGCAGGGGAGCGATGCGAACGACCGCATCTACCAATCG
ACGTTCATGGCGAGGAGTGGCGGCAAGGCGCCGTCGCGGAAGTTTTGGCA
AAAGTACGTGGACTTTTGCCAGACGGCGTATGGAAGACGCAGCATTCCGT
GGGTGGTCTGCGAGATGAACCTGTTCAACAACGCGATCAATAGGCGGCGT
AACAACGCATTCGCGTTCAGGGGGGCCAACCTGATCACGCACTACATTGT
GGGAGGCGGCACGGCGGCGCACAAGAAGTTTGTGTACTACTGGATGAAGC
GTCACCTGGCGCCGTTCACAACGGGCGTGTACGTGAACTACCCCGAGCGG
GAGCTGAGCAATTACGCGCAGATGTACTGGGGTCGCAACCTGCCACGTTT
GCGAAAGGTGAAAAGGAGGTACGATCCAGGGTACTTTTTCATGAACGCGC
AATCAATCCCCACGTAA
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