Gvermi12919.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12919.t1
Unique NameGvermi12919.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2082453..2085070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12919Gvermi12919Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2082453..2085928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12919.t1Gvermi12919.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2082453..2085070 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12919.t1.stop1Gvermi12919.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2082453..2082455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12919.t1.CDS1Gvermi12919.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2082453..2082552 -
Gvermi12919.t1.CDS2Gvermi12919.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2083731..2085070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12919.t1.exon1Gvermi12919.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2082453..2082552 -
Gvermi12919.t1.exon2Gvermi12919.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2083731..2085070 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12919.t1.intron1Gvermi12919.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2082553..2083730 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12919.t1.start1Gvermi12919.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2085068..2085070 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12919.t1 ID=Gvermi12919.t1|Name=Gvermi12919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=480bp
LCDARKPHTHTDASDVIRLPHILQHVFSSPTNVNLESTPPQSAQPNELHL
QSSSWYDRPDTELNASQGKLHQFSAECTSSSDATAWDRLQLLGRLHGSQS
SLQSSTSSDHRSSEPQLTSAEKHHAKLRAYTLSDEYASSDMDAVSAKDVR
EGHESDEHQYSQLVARVSAAERQSANRSFRSLLNAESQGPSSSDLREPLE
GSNTSLGSDMVDSFVRKVRSVRTSDSTLMTHFREGISFPSIRIDEEGDGM
EAGMFDILKELSDHVNVQERKESNKCLKDKCARPANYVADVRAENGTRSL
ERKLSAEPAPLTTSSLRNVPRVGFRNYSDAFMTDPLPVRRDRTTKGIVPA
VGAAELNSENVGSLVSDDVAAAFKMYDSRSEMTPYAPSLQSDLSSDAKGP
VVDVDSPPRWDERRAGSHIHDEYEAYDELVVAEYQVEERVEEEHSGLFGA
RAVNTPACQAQLCALAEHESRQRKCLILL*
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spliced messenger RNA

>Gvermi12919.t1 ID=Gvermi12919.t1|Name=Gvermi12919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at ScGOVlb_425:2082453..2085070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTGCGACGCCCGCAAACCGCACACGCACACCGATGCAAGCGACGTGAT
TCGTTTACCACACATTCTGCAACACGTTTTTTCGTCGCCCACAAACGTCA
ACCTCGAGTCCACGCCGCCGCAAAGTGCGCAGCCCAACGAACTCCACCTC
CAGTCCTCCTCGTGGTACGACCGCCCCGACACCGAGCTGAATGCGTCGCA
GGGCAAGCTGCACCAGTTCAGCGCCGAATGCACGTCCTCGTCCGACGCCA
CCGCCTGGGATCGCCTCCAACTGCTGGGCCGCCTGCACGGCTCACAGTCC
TCGCTGCAGAGCAGCACCTCATCCGACCACAGGTCCTCGGAGCCGCAGCT
CACCAGCGCTGAAAAGCACCACGCCAAACTGCGCGCCTACACGCTCAGTG
ACGAGTACGCCTCGTCGGACATGGACGCCGTGTCGGCCAAGGACGTGAGG
GAGGGTCATGAAAGCGATGAACACCAGTACTCTCAACTGGTGGCGCGCGT
GAGTGCTGCGGAGCGCCAAAGCGCAAATCGTAGCTTTCGCAGCCTTCTCA
ACGCCGAGTCGCAGGGCCCGTCCTCGTCGGACCTGCGCGAACCTCTGGAA
GGCAGCAACACGTCGCTTGGCTCCGACATGGTGGATTCATTTGTACGCAA
GGTGCGTTCCGTGCGAACGTCCGACTCCACGCTGATGACGCACTTCCGCG
AGGGCATCTCGTTCCCGTCCATTCGAATCGACGAAGAAGGCGACGGGATG
GAGGCGGGCATGTTTGACATTCTCAAGGAACTGTCGGACCATGTCAACGT
GCAGGAGAGAAAAGAGAGTAACAAGTGCTTGAAAGACAAGTGTGCGCGGC
CAGCCAATTACGTTGCGGACGTGAGAGCGGAAAACGGCACCCGCTCCCTT
GAACGAAAGCTGAGCGCTGAGCCGGCGCCGCTGACGACGAGCTCGCTGAG
AAATGTGCCCAGGGTTGGCTTCCGCAACTACTCGGACGCATTCATGACGG
ACCCGCTGCCGGTGAGAAGGGACCGCACGACGAAGGGGATTGTTCCAGCG
GTGGGGGCGGCGGAGCTGAACTCCGAAAACGTTGGCTCGCTTGTGTCCGA
CGACGTTGCAGCCGCTTTCAAGATGTATGACAGTCGGAGCGAAATGACGC
CGTACGCGCCATCGCTGCAATCGGACTTGAGTTCGGACGCCAAGGGGCCG
GTGGTTGACGTGGACTCGCCGCCGAGATGGGATGAGCGGCGCGCGGGCAG
CCACATTCACGACGAATACGAGGCGTACGACGAATTGGTTGTGGCGGAGT
ACCAGGTGGAAGAACGGGTGGAGGAGGAGCACTCGGGGCTCTTTGGCGCC
CGGGCTGTGAACACTCCCGCATGTCAAGCTCAACTATGCGCACTCGCCGA
GCACGAATCGAGGCAACGCAAGTGTTTGATTTTGCTGTAG
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protein sequence of Gvermi12919.t1

>Gvermi12919.t1 ID=Gvermi12919.t1|Name=Gvermi12919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=480bp
LCDARKPHTHTDASDVIRLPHILQHVFSSPTNVNLESTPPQSAQPNELHL
QSSSWYDRPDTELNASQGKLHQFSAECTSSSDATAWDRLQLLGRLHGSQS
SLQSSTSSDHRSSEPQLTSAEKHHAKLRAYTLSDEYASSDMDAVSAKDVR
EGHESDEHQYSQLVARVSAAERQSANRSFRSLLNAESQGPSSSDLREPLE
GSNTSLGSDMVDSFVRKVRSVRTSDSTLMTHFREGISFPSIRIDEEGDGM
EAGMFDILKELSDHVNVQERKESNKCLKDKCARPANYVADVRAENGTRSL
ERKLSAEPAPLTTSSLRNVPRVGFRNYSDAFMTDPLPVRRDRTTKGIVPA
VGAAELNSENVGSLVSDDVAAAFKMYDSRSEMTPYAPSLQSDLSSDAKGP
VVDVDSPPRWDERRAGSHIHDEYEAYDELVVAEYQVEERVEEEHSGLFGA
RAVNTPACQAQLCALAEHESRQRKCLILL*
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mRNA from alignment at ScGOVlb_425:2082453..2085070-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12919.t1 ID=Gvermi12919.t1|Name=Gvermi12919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2618bp|location=Sequence derived from alignment at ScGOVlb_425:2082453..2085070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTGCGACGCCCGCAAACCGCACACGCACACCGATGCAAGCGACGTGAT
TCGTTTACCACACATTCTGCAACACGTTTTTTCGTCGCCCACAAACGTCA
ACCTCGAGTCCACGCCGCCGCAAAGTGCGCAGCCCAACGAACTCCACCTC
CAGTCCTCCTCGTGGTACGACCGCCCCGACACCGAGCTGAATGCGTCGCA
GGGCAAGCTGCACCAGTTCAGCGCCGAATGCACGTCCTCGTCCGACGCCA
CCGCCTGGGATCGCCTCCAACTGCTGGGCCGCCTGCACGGCTCACAGTCC
TCGCTGCAGAGCAGCACCTCATCCGACCACAGGTCCTCGGAGCCGCAGCT
CACCAGCGCTGAAAAGCACCACGCCAAACTGCGCGCCTACACGCTCAGTG
ACGAGTACGCCTCGTCGGACATGGACGCCGTGTCGGCCAAGGACGTGAGG
GAGGGTCATGAAAGCGATGAACACCAGTACTCTCAACTGGTGGCGCGCGT
GAGTGCTGCGGAGCGCCAAAGCGCAAATCGTAGCTTTCGCAGCCTTCTCA
ACGCCGAGTCGCAGGGCCCGTCCTCGTCGGACCTGCGCGAACCTCTGGAA
GGCAGCAACACGTCGCTTGGCTCCGACATGGTGGATTCATTTGTACGCAA
GGTGCGTTCCGTGCGAACGTCCGACTCCACGCTGATGACGCACTTCCGCG
AGGGCATCTCGTTCCCGTCCATTCGAATCGACGAAGAAGGCGACGGGATG
GAGGCGGGCATGTTTGACATTCTCAAGGAACTGTCGGACCATGTCAACGT
GCAGGAGAGAAAAGAGAGTAACAAGTGCTTGAAAGACAAGTGTGCGCGGC
CAGCCAATTACGTTGCGGACGTGAGAGCGGAAAACGGCACCCGCTCCCTT
GAACGAAAGCTGAGCGCTGAGCCGGCGCCGCTGACGACGAGCTCGCTGAG
AAATGTGCCCAGGGTTGGCTTCCGCAACTACTCGGACGCATTCATGACGG
ACCCGCTGCCGGTGAGAAGGGACCGCACGACGAAGGGGATTGTTCCAGCG
GTGGGGGCGGCGGAGCTGAACTCCGAAAACGTTGGCTCGCTTGTGTCCGA
CGACGTTGCAGCCGCTTTCAAGATGTATGACAGTCGGAGCGAAATGACGC
CGTACGCGCCATCGCTGCAATCGGACTTGAGTTCGGACGCCAAGGGGCCG
GTGGTTGACGTGGACTCGCCGCCGAGATGGGATGAGCGGCGCGCGGGCAG
CCACATTCACGACGAATACGAGGCGTACGACGAATTGGTTGTGGCGGAGT
ACCAGGTGGAAGAACGGGTGGAGGAGGAGCACTCGGGGCTGTCGAAGGCG
GAGGGGCGCCGGGAGCGGCCGCTGTCCGCGGGGGCTCGGCGCGCGTGGGG
CGACGGGGAGGGCGAGCCGCTGCGCGCCATCAAGAGCGAGACGTCGCCGC
TGGACAGCGCGCTGACGAAGCTGAGCCAGTCGCGGCGCACGGAGGGCGGC
GGGGTGCGAAGCGCGTTGGGGCTGCTGCGGCGCAGCGTGCGCGGCGACGA
GGGGGAGCGGCCGCGGCGGCTGGACTCGCTCAAGGCGATGGTGCTGGGGC
GCGCGCGCGCGGCGCGCGCGGAGGAGGGCGGGCAGGCGGTGCGGCTGGTG
TCGGGCGGCGGCGAGCGCGGGAGCGCGGCGGCGCGCGGCGGCGAGGCGCG
GCGCGCGCTCGCGTCGCGGTCGGCGAGCAAGGCGGGGCGCGGGGAGCGGC
GGTGGTGGGGCAAGCGGCGCGACGGCGGCGGCGGCGGCGGCGGGGCGCGC
GACAGGGGGCTCGTGGTCACGTCGGGCATGGGGGCGCTGCTGCGGTCGCA
CAGGAAGGGCAGGTGACGCGACGGCGCCGCGCCCTCCCCCTCGGTGCAAA
AAGGCTCAACATTGGCGCGTGGCGCAGCGGTGCTGTGCGAGGCGGCGAGC
AAAGTGGGCGGCCTTGTTGGCGCGCACGTGTGTCGCTGTGTGTGCAGGTG
CAGGTACTCGGCAGTGGGGCGCGAGGAGACGAGCCGCGAGCTGCTGCGCG
TGCAGCGCTTCCGGGTGAGGACGGAGGCGCGTGAATGGCGGGCAGCGGAG
GGAGCGGCGCCGTTGCTCATTGCAGCGCAGCTTGGTCTTTGCGCAAATAA
CTCACAAACACTTGAAACGCATCCTAAATCATTCATCGCAAAATAATTAA
ATATCTTTCGTTGCAAAATAACAAGCACCCCCACGTGGCCAGCTGCACAC
GCTCTTCAACAAAGCGCTGTGAGGCGCAAATGAGCAAAACGTGCTCTGAG
CGCGCCTGAGGCGCTCAACAAGCGCTTCGCGCTCGGAGTTTCAAGCCAAC
ACCGCGCTGCGTCTCGGGGCAGCCTCGTCAACGGCTTCGCTGGCGGGATC
CCCGCTCCTTGGCTCACGTGCGCCAGTTCCTTTCCCACTCTTCGGAGTGC
ATCCATCCTGTCCTGTCTTGCACTCTTTTGATCTTCTCAGCTCTGGTAAT
CTGTTGCTGTTTTTCCAGCTTTGGCGCCCGGGCTGTGAACACTCCCGCAT
GTCAAGCTCAACTATGCGCACTCGCCGAGCACGAATCGAGGCAACGCAAG
TGTTTGATTTTGCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:2082453..2085070-

>Gvermi12919.t1 ID=Gvermi12919.t1|Name=Gvermi12919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1440bp|location=Sequence derived from alignment at ScGOVlb_425:2082453..2085070- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTGCGACGCCCGCAAACCGCACACGCACACCGATGCAAGCGACGTGAT
TCGTTTACCACACATTCTGCAACACGTTTTTTCGTCGCCCACAAACGTCA
ACCTCGAGTCCACGCCGCCGCAAAGTGCGCAGCCCAACGAACTCCACCTC
CAGTCCTCCTCGTGGTACGACCGCCCCGACACCGAGCTGAATGCGTCGCA
GGGCAAGCTGCACCAGTTCAGCGCCGAATGCACGTCCTCGTCCGACGCCA
CCGCCTGGGATCGCCTCCAACTGCTGGGCCGCCTGCACGGCTCACAGTCC
TCGCTGCAGAGCAGCACCTCATCCGACCACAGGTCCTCGGAGCCGCAGCT
CACCAGCGCTGAAAAGCACCACGCCAAACTGCGCGCCTACACGCTCAGTG
ACGAGTACGCCTCGTCGGACATGGACGCCGTGTCGGCCAAGGACGTGAGG
GAGGGTCATGAAAGCGATGAACACCAGTACTCTCAACTGGTGGCGCGCGT
GAGTGCTGCGGAGCGCCAAAGCGCAAATCGTAGCTTTCGCAGCCTTCTCA
ACGCCGAGTCGCAGGGCCCGTCCTCGTCGGACCTGCGCGAACCTCTGGAA
GGCAGCAACACGTCGCTTGGCTCCGACATGGTGGATTCATTTGTACGCAA
GGTGCGTTCCGTGCGAACGTCCGACTCCACGCTGATGACGCACTTCCGCG
AGGGCATCTCGTTCCCGTCCATTCGAATCGACGAAGAAGGCGACGGGATG
GAGGCGGGCATGTTTGACATTCTCAAGGAACTGTCGGACCATGTCAACGT
GCAGGAGAGAAAAGAGAGTAACAAGTGCTTGAAAGACAAGTGTGCGCGGC
CAGCCAATTACGTTGCGGACGTGAGAGCGGAAAACGGCACCCGCTCCCTT
GAACGAAAGCTGAGCGCTGAGCCGGCGCCGCTGACGACGAGCTCGCTGAG
AAATGTGCCCAGGGTTGGCTTCCGCAACTACTCGGACGCATTCATGACGG
ACCCGCTGCCGGTGAGAAGGGACCGCACGACGAAGGGGATTGTTCCAGCG
GTGGGGGCGGCGGAGCTGAACTCCGAAAACGTTGGCTCGCTTGTGTCCGA
CGACGTTGCAGCCGCTTTCAAGATGTATGACAGTCGGAGCGAAATGACGC
CGTACGCGCCATCGCTGCAATCGGACTTGAGTTCGGACGCCAAGGGGCCG
GTGGTTGACGTGGACTCGCCGCCGAGATGGGATGAGCGGCGCGCGGGCAG
CCACATTCACGACGAATACGAGGCGTACGACGAATTGGTTGTGGCGGAGT
ACCAGGTGGAAGAACGGGTGGAGGAGGAGCACTCGGGGCTCTTTGGCGCC
CGGGCTGTGAACACTCCCGCATGTCAAGCTCAACTATGCGCACTCGCCGA
GCACGAATCGAGGCAACGCAAGTGTTTGATTTTGCTGTAG
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