Gvermi12903.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12903.t1
Unique NameGvermi12903.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1997631..1998508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog34839.XP_005383009.1
Preferred nameLRRIQ4
PFAMsIQ,LRR_1,LRR_4,LRR_8
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0005215,GO:0005216,GO:0005225,GO:0005253,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007154,GO:0007165,GO:0008150,GO:0008509,GO:0009987,GO:0015075,GO:0015103,GO:0015267,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022803,GO:0022838,GO:0022857,GO:0023052,GO:0031224,GO:0032991,GO:0034220,GO:0034702,GO:0044424,GO:0044425,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0071944,GO:0098656,GO:0098796,GO:1902495,GO:1990351
Evalue4.8e-06
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota,38C0V@33154|Opisthokonta,3BJNH@33208|Metazoa,3CY4A@33213|Bilateria,486GS@7711|Chordata,499UZ@7742|Vertebrata,3JD1K@40674|Mammalia,35B42@314146|Euarchontoglires,4PZDE@9989|Rodentia
DescriptionLeucine-rich repeat and IQ domain-containing protein 4
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12903Gvermi12903Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1997631..1998508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12903.t1Gvermi12903.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1997631..1998508 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12903.t1.start1Gvermi12903.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1997631..1997633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12903.t1.CDS1Gvermi12903.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1997631..1997851 +
Gvermi12903.t1.CDS2Gvermi12903.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1997935..1998508 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12903.t1.exon1Gvermi12903.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1997631..1997851 +
Gvermi12903.t1.exon2Gvermi12903.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1997935..1998508 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12903.t1.intron1Gvermi12903.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1997852..1997934 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12903.t1.stop1Gvermi12903.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1998506..1998508 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12903.t1 ID=Gvermi12903.t1|Name=Gvermi12903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=265bp
MQVSPSLAEFMAKLEEGPQGVDDALAEIDRCADEAASTLDLQQMFLTDED
IKVISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNL
IEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGRLKSIP
SSVFRCENLEELHLYGNSIKHISEDVGCLRSLRALNVGRNQISKLPDSIC
DCSSLEVLHAYENCLATLPSNISKLDKLKTLNVEFNADLPTPPRSVRCSS
GVQAIAAFHANGTG*
back to top

spliced messenger RNA

>Gvermi12903.t1 ID=Gvermi12903.t1|Name=Gvermi12903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_425:1997631..1998508+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTTTCTCCAAGTCTCGCCGAGTTTATGGCTAAACTCGAAGAAGG
ACCTCAAGGCGTCGATGATGCATTAGCTGAGATTGATCGATGTGCAGATG
AGGCCGCTTCTACGCTTGACCTTCAGCAGATGTTTCTCACAGACGAGGAC
ATAAAGGTGATATCGAAAGAGTTTGGAAGAGTTGCTGATCATGTGACCAC
CTTGAATATTTTTATGAACGAAATCACCGTTTTACCGGCCTCCATCGCCA
AGCTTTCAAATCTCGAAGTATTGCATGCTGGATGTAATCCCCTCAACCTT
ATTGAACCAGAACTACTTACAGGATTGTCAAAGCTACGAGAGCTAGACAT
TGGCTTTAGTGAGACTCTCGAGGAAATCCCTGATGCATTTCATGGATGCC
ACGCGCTTCAAATTCTTCAAGCGGGAAACGGACGGCTGAAATCCATCCCG
TCAAGTGTATTTCGCTGTGAAAACCTCGAAGAGCTTCATTTGTATGGAAA
CAGCATCAAGCATATCAGCGAGGACGTTGGATGTTTACGCTCACTACGAG
CGCTTAACGTCGGGCGAAATCAAATATCTAAACTTCCAGACTCAATTTGC
GACTGCTCTTCTCTAGAAGTTCTACACGCCTACGAAAATTGTCTCGCGAC
TCTTCCTTCAAACATTTCTAAGTTGGACAAGCTGAAGACGTTAAACGTTG
AGTTTAACGCAGATCTGCCTACACCACCACGATCTGTGCGATGTTCTTCA
GGTGTACAAGCGATTGCTGCATTCCATGCAAACGGGACGGGCTGA
back to top

protein sequence of Gvermi12903.t1

>Gvermi12903.t1 ID=Gvermi12903.t1|Name=Gvermi12903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=265bp
MQVSPSLAEFMAKLEEGPQGVDDALAEIDRCADEAASTLDLQQMFLTDED
IKVISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNL
IEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGRLKSIP
SSVFRCENLEELHLYGNSIKHISEDVGCLRSLRALNVGRNQISKLPDSIC
DCSSLEVLHAYENCLATLPSNISKLDKLKTLNVEFNADLPTPPRSVRCSS
GVQAIAAFHANGTG*
back to top

mRNA from alignment at ScGOVlb_425:1997631..1998508+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12903.t1 ID=Gvermi12903.t1|Name=Gvermi12903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=878bp|location=Sequence derived from alignment at ScGOVlb_425:1997631..1998508+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGTTTCTCCAAGTCTCGCCGAGTTTATGGCTAAACTCGAAGAAGG
ACCTCAAGGCGTCGATGATGCATTAGCTGAGATTGATCGATGTGCAGATG
AGGCCGCTTCTACGCTTGACCTTCAGCAGATGTTTCTCACAGACGAGGAC
ATAAAGGTGATATCGAAAGAGTTTGGAAGAGTTGCTGATCATGTGACCAC
CTTGAATATTTTTATGAACGAGTAAGTTTGGAGAATGAACAAACTTTTTC
TAGCAGACTGGTGAACACTAACTTGAAGCAAATGACTCTAAACAATTGAT
ACAGAATCACCGTTTTACCGGCCTCCATCGCCAAGCTTTCAAATCTCGAA
GTATTGCATGCTGGATGTAATCCCCTCAACCTTATTGAACCAGAACTACT
TACAGGATTGTCAAAGCTACGAGAGCTAGACATTGGCTTTAGTGAGACTC
TCGAGGAAATCCCTGATGCATTTCATGGATGCCACGCGCTTCAAATTCTT
CAAGCGGGAAACGGACGGCTGAAATCCATCCCGTCAAGTGTATTTCGCTG
TGAAAACCTCGAAGAGCTTCATTTGTATGGAAACAGCATCAAGCATATCA
GCGAGGACGTTGGATGTTTACGCTCACTACGAGCGCTTAACGTCGGGCGA
AATCAAATATCTAAACTTCCAGACTCAATTTGCGACTGCTCTTCTCTAGA
AGTTCTACACGCCTACGAAAATTGTCTCGCGACTCTTCCTTCAAACATTT
CTAAGTTGGACAAGCTGAAGACGTTAAACGTTGAGTTTAACGCAGATCTG
CCTACACCACCACGATCTGTGCGATGTTCTTCAGGTGTACAAGCGATTGC
TGCATTCCATGCAAACGGGACGGGCTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1997631..1998508+

>Gvermi12903.t1 ID=Gvermi12903.t1|Name=Gvermi12903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=795bp|location=Sequence derived from alignment at ScGOVlb_425:1997631..1998508+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAGTTTCTCCAAGTCTCGCCGAGTTTATGGCTAAACTCGAAGAAGG
ACCTCAAGGCGTCGATGATGCATTAGCTGAGATTGATCGATGTGCAGATG
AGGCCGCTTCTACGCTTGACCTTCAGCAGATGTTTCTCACAGACGAGGAC
ATAAAGGTGATATCGAAAGAGTTTGGAAGAGTTGCTGATCATGTGACCAC
CTTGAATATTTTTATGAACGAAATCACCGTTTTACCGGCCTCCATCGCCA
AGCTTTCAAATCTCGAAGTATTGCATGCTGGATGTAATCCCCTCAACCTT
ATTGAACCAGAACTACTTACAGGATTGTCAAAGCTACGAGAGCTAGACAT
TGGCTTTAGTGAGACTCTCGAGGAAATCCCTGATGCATTTCATGGATGCC
ACGCGCTTCAAATTCTTCAAGCGGGAAACGGACGGCTGAAATCCATCCCG
TCAAGTGTATTTCGCTGTGAAAACCTCGAAGAGCTTCATTTGTATGGAAA
CAGCATCAAGCATATCAGCGAGGACGTTGGATGTTTACGCTCACTACGAG
CGCTTAACGTCGGGCGAAATCAAATATCTAAACTTCCAGACTCAATTTGC
GACTGCTCTTCTCTAGAAGTTCTACACGCCTACGAAAATTGTCTCGCGAC
TCTTCCTTCAAACATTTCTAAGTTGGACAAGCTGAAGACGTTAAACGTTG
AGTTTAACGCAGATCTGCCTACACCACCACGATCTGTGCGATGTTCTTCA
GGTGTACAAGCGATTGCTGCATTCCATGCAAACGGGACGGGCTGA
back to top