Gvermi12903.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12903.t1
Unique NameGvermi12903.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length265
Homology
BLAST of Gvermi12903.t1 vs. uniprot
Match: A0A2V3J1Q3_9FLOR (Protein lap1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Q3_9FLOR)

HSP 1 Score: 223 bits (568), Expect = 3.720e-69
Identity = 172/263 (65.40%), Postives = 199/263 (75.67%), Query Frame = 0
Query:    1 MQVSPSLAEFMAKLEEGPQGVDDALAEIDRCADEAASTLDLQQMFLTDEDIKVISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNLIEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGRLKSIPSSVFRCENLEELHLYGNSIKHISEDVGCLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADLPTPPRSVRCSSGVQAIAAFHANGT 263
            M  S SLAEFM+KLE+GPQGV+DA   +DRCA E++  LDLQQM LTDED+ V++ +F  VA+HVTTLN+FMNEITVLPASIA+LSNL+VL AGCNPL  ++  LL GLSKLRELDIGFS+TLE++PD+FH CH+L+ L AGNG LKSIP             +          ++G     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      ADLP PPRSV   + V+A AAFHANGT
Sbjct:    1 MHASSSLAEFMSKLEQGPQGVEDACVAVDRCASESSPILDLQQMMLTDEDLNVVASKFQTVAEHVTTLNLFMNEITVLPASIAQLSNLQVLKAGCNPLKELQSGLLEGLSKLRELDIGFSDTLEDLPDSFHACHSLKTLHAGNGLLKSIPLXXXXXXXXXXXXVXXXXXXXXXNEIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNVDFNADLPIPPRSVFSVANVKATAAFHANGT 263          
BLAST of Gvermi12903.t1 vs. uniprot
Match: R7QL55_CHOCR (Leucine rich repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL55_CHOCR)

HSP 1 Score: 188 bits (478), Expect = 1.600e-55
Identity = 92/177 (51.98%), Postives = 121/177 (68.36%), Query Frame = 0
Query:    1 MQVSPSLAEFMAKLEEGPQGVDDALAEIDRCADEAASTLDLQQMFLTDEDIKVISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNLIEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGRLKSIPSSVFRCENLEELHLYGNSIKHISEDVG 177
            M  S SLA+FM +L EGP G+DDALA +++CA ++ + LDLQQM LTDED+++IS +F  +A HVT LN+FMNEI+VLPASI  LSNLE+LHAGCNPL  ++  L   L KL E+D+GFSE L +                        P S+F+C NLEEL+LYGNS+K +SE++G
Sbjct:    1 MHFSSSLADFMERLNEGPAGIDDALAAVEKCAADSGTVLDLQQMTLTDEDLQLISTKFDSLAAHVTKLNLFMNEISVLPASITALSNLEILHAGCNPLESVDAALFAALPKLTEIDVGFSEILSQXXXXXXXXXXXXXXXXXXXXXXXXPPSLFKCSNLEELYLYGNSLKGVSEEIG 177          
BLAST of Gvermi12903.t1 vs. uniprot
Match: A0A7S2ZKY7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZKY7_9RHOD)

HSP 1 Score: 121 bits (303), Expect = 1.610e-29
Identity = 59/146 (40.41%), Postives = 94/146 (64.38%), Query Frame = 0
Query:   20 GVDDALAEIDRCADEAASTLDLQQMFLTDEDIKVISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNLIEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGRLKSIPSSVFRCENLEELHLY 165
            G+ +A  E+ +  D     L+LQQ+ LTDED+  +    G +  +V  LN+F+NE+T +PA ++KLS+LE L  GCNPL+ I  E+ T + +L  LD+G+ + L  +PD+   C +L+ L AGN R+ ++PS++  C+NLE L +Y
Sbjct:   20 GMVNARLELAKVTDGLTDELNLQQLGLTDEDMASLVGPIGDLGKNVRVLNLFLNELTFIPAELSKLSHLEELKVGCNPLSSIPEEVFTEMHRLTYLDVGYGDILSTLPDSIGECASLKELWAGNNRIHTLPSTLCSCKNLEVLQVY 165          
BLAST of Gvermi12903.t1 vs. uniprot
Match: A0A7S1TID4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TID4_9RHOD)

HSP 1 Score: 122 bits (305), Expect = 3.200e-29
Identity = 69/177 (38.98%), Postives = 106/177 (59.89%), Query Frame = 0
Query:    6 SLAEFMAKLEEGPQGV------DDALAEIDRCADEAAS-TLDLQQMFLTDEDIK-----VISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNLIEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGRLKSIPSSVFRCENLEELHLYGNSIK 170
            ++AE  A   +G  G       ++A   I R  +E     LDLQQM LTD D++     +++ ++ RV     +LN+F+N +T LP  +  L+NLE LH  CNPL  I+  L   L+ L  LD+G+SE+L ++P++     +L+IL+ GN RL+ +PSS+  C+ LEEL+LYGN +K
Sbjct:   63 TMAEVTANDHDGSVGASVEQRREEAKRSIQRAKEEDGPIALDLQQMGLTDHDLEGLREDILAGQYTRVI----SLNLFLNRLTRLPHWLGSLTNLEELHCACNPLAEIDSRLFENLTSLHTLDLGYSESLCQLPESIGALTSLRILRLGNNRLEQVPSSINHCQRLEELYLYGNDLK 235          
BLAST of Gvermi12903.t1 vs. uniprot
Match: A0A7S0G5C0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5C0_9RHOD)

HSP 1 Score: 110 bits (275), Expect = 2.070e-25
Identity = 55/145 (37.93%), Postives = 86/145 (59.31%), Query Frame = 0
Query:   20 GVDDALAEIDRCADEAASTLDLQQMFLTDEDIKVISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNLIEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGRLKSIPSSVFRCENLEELHL 164
            G+  A  E+ +        L+LQQ+ LTDED+  +      +  ++  LN+F NE+T +PA  +KLS+LE L  GCNPL+ I  +L   + +L  LDIG+  TL  +P++   C +L+ L AGN R++S PS++  C+ LE L +
Sbjct:   21 GLVKARLELAKVTGGLTDELNLQQLGLTDEDMASVVTPIANLGKNLRVLNLFFNELTFIPAEFSKLSHLEELKVGCNPLSSIPAKLFADMHRLTYLDIGYGNTLSTLPESIGECESLKELWAGNNRIRSFPSALCNCKKLEVLQV 165          
BLAST of Gvermi12903.t1 vs. uniprot
Match: A0A7S2ZM99_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZM99_9RHOD)

HSP 1 Score: 102 bits (253), Expect = 6.320e-23
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 0
Query:   20 GVDDALAEIDRCADEAASTLDLQQMFLTDEDIKVISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNLIEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGR 145
            G+ +A  E+ +  D     L+LQQ+ LTDED+  +    G +  +V  LN+F+NE+T +PA ++KLS+LE L  GCNPL+ I  E+ T + +L  LD+G+ + L  +PD+   C +L+ L AGN R
Sbjct:   20 GMVNARLELAKVTDGLTDELNLQQLGLTDEDMASLVGPIGDLGKNVRVLNLFLNELTFIPAELSKLSHLEELKVGCNPLSSIPEEVFTEMHRLTYLDVGYGDILSTLPDSIGECASLKELWAGNNR 145          
The following BLAST results are available for this feature:
BLAST of Gvermi12903.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3J1Q3_9FLOR3.720e-6965.40Protein lap1 n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
R7QL55_CHOCR1.600e-5551.98Leucine rich repeat-containing protein n=1 Tax=Cho... [more]
A0A7S2ZKY7_9RHOD1.610e-2940.41Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TID4_9RHOD3.200e-2938.98Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0G5C0_9RHOD2.070e-2537.93Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZM99_9RHOD6.320e-2340.48Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 202..221
e-value: 27.0
score: 10.4
coord: 225..242
e-value: 530.0
score: 0.6
coord: 85..105
e-value: 610.0
score: 0.1
coord: 179..198
e-value: 5.3
score: 15.8
coord: 133..152
e-value: 310.0
score: 2.4
coord: 62..81
e-value: 350.0
score: 1.9
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 57..186
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 123..246
NoneNo IPR availablePANTHERPTHR16083:SF27LEUCINE-RICH REPEAT PROTEIN SOC-2 HOMOLOG-LIKE PROTEINcoord: 57..186
NoneNo IPR availablePANTHERPTHR16083:SF27LEUCINE-RICH REPEAT PROTEIN SOC-2 HOMOLOG-LIKE PROTEINcoord: 123..246
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 39..246
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 85..108
e-value: 17.0
score: 11.4
coord: 109..132
e-value: 320.0
score: 0.9
coord: 203..225
e-value: 130.0
score: 4.2
coord: 179..202
e-value: 0.014
score: 24.6
coord: 156..178
e-value: 65.0
score: 6.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 136..192
e-value: 4.3E-9
score: 36.0
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 158..179
score: 7.750458
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 144..241
e-value: 1.2E-27
score: 98.4
coord: 9..143
e-value: 8.5E-17
score: 63.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1997631..1998508 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12903.t1Gvermi12903.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1997631..1998508 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12903.t1 ID=Gvermi12903.t1|Name=Gvermi12903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=265bp
MQVSPSLAEFMAKLEEGPQGVDDALAEIDRCADEAASTLDLQQMFLTDED
IKVISKEFGRVADHVTTLNIFMNEITVLPASIAKLSNLEVLHAGCNPLNL
IEPELLTGLSKLRELDIGFSETLEEIPDAFHGCHALQILQAGNGRLKSIP
SSVFRCENLEELHLYGNSIKHISEDVGCLRSLRALNVGRNQISKLPDSIC
DCSSLEVLHAYENCLATLPSNISKLDKLKTLNVEFNADLPTPPRSVRCSS
GVQAIAAFHANGTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf