Gvermi12882.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12882.t1
Unique NameGvermi12882.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1914720..1916069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12882Gvermi12882Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1914720..1916069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12882.t1Gvermi12882.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1914720..1916069 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12882.t1.stop1Gvermi12882.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1914720..1914722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12882.t1.CDS1Gvermi12882.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1914720..1914872 -
Gvermi12882.t1.CDS2Gvermi12882.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1914954..1916069 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12882.t1.exon1Gvermi12882.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1914720..1914872 -
Gvermi12882.t1.exon2Gvermi12882.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1914954..1916069 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12882.t1.intron1Gvermi12882.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1914873..1914953 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12882.t1.start1Gvermi12882.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1916067..1916069 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12882.t1 ID=Gvermi12882.t1|Name=Gvermi12882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp
MASSLDAMSSTRSRRRRFAKLRRQRSNAPRALAAALFFFLLCYEMVVLRP
PVVPKPPVSGRGAAPPSPPAPVAAVPPTHPPRPTQSSSMPSESAVGSHQA
SPNPHIVAKAAVSPSSISTRLAELQKISSYTSPPSTSHSLRAVADGEQAS
PSPSFHPLRKRNSHTSHPVSSSLAQMEKLAADRGDDQDDAKSKPRSPSEQ
SDRTLSKSEHRADPGAGENFWQWFQETKETEGTTNVSCPPDRERVCLMFY
KFIKKYKIRSVYDVSCAQNLEWVPDVVRKAGKELWGFKYYCNAPDAKDLE
RAKEKLSGLSYVQFAPDLWWRTGFAEDTQLLFAWDLLPHIAYGRIWSFFV
KSKAQNIKYLLFDNYPGIMNDPSPKRQYLNIRKHPFRFPAAKEVVQNVTE
PGETEKRQLLFYETDMLPDNLQ*
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spliced messenger RNA

>Gvermi12882.t1 ID=Gvermi12882.t1|Name=Gvermi12882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_425:1914720..1916069- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGCAGTCTCGACGCCATGAGCTCCACGCGTTCGCGCCGTCGCCG
CTTCGCAAAGCTGCGTCGGCAGCGCTCTAACGCCCCACGTGCCCTGGCTG
CCGCCCTCTTCTTCTTCCTCCTTTGCTACGAGATGGTTGTCTTGCGACCG
CCCGTCGTGCCCAAGCCCCCTGTTTCCGGCCGCGGTGCTGCGCCTCCGTC
TCCACCCGCGCCTGTTGCAGCGGTGCCTCCCACCCACCCGCCGCGCCCAA
CGCAAAGCTCCTCGATGCCATCTGAGTCTGCCGTCGGCTCCCATCAGGCC
TCGCCGAACCCCCATATCGTTGCCAAGGCTGCCGTGTCGCCATCGTCCAT
CTCCACCAGACTGGCTGAACTGCAAAAGATCTCGTCGTACACCAGCCCGC
CTTCCACTTCGCATTCGCTTCGTGCCGTTGCCGACGGCGAACAAGCCTCG
CCTTCCCCATCGTTTCACCCGCTCAGAAAACGCAATTCGCACACATCCCA
TCCAGTCTCCTCGTCTTTGGCGCAAATGGAGAAGCTGGCTGCTGACCGTG
GGGATGATCAAGACGACGCCAAGTCTAAACCACGCTCCCCTTCGGAACAG
TCCGACCGTACGCTTTCCAAGTCAGAACACCGTGCAGATCCTGGTGCGGG
AGAGAATTTCTGGCAGTGGTTTCAAGAGACAAAGGAGACCGAGGGGACCA
CCAACGTCTCGTGCCCACCAGACAGGGAGCGCGTTTGTCTCATGTTTTAC
AAGTTCATCAAAAAGTACAAGATTCGCTCTGTCTACGATGTGTCTTGTGC
ACAGAACTTGGAATGGGTTCCGGACGTTGTGCGAAAGGCTGGAAAGGAGT
TGTGGGGTTTCAAGTATTACTGCAATGCACCTGACGCAAAGGATCTAGAG
CGCGCTAAGGAAAAGCTCTCCGGGCTCTCCTACGTCCAATTTGCCCCAGA
TTTATGGTGGAGAACAGGTTTTGCCGAAGATACGCAGCTGCTCTTTGCCT
GGGACTTGTTACCCCACATCGCATATGGTCGAATTTGGAGTTTCTTTGTC
AAGTCAAAGGCACAAAATATCAAGTATCTCTTATTTGACAACTATCCAGG
GATCATGAACGACCCGTCTCCAAAGCGACAATATCTGAATATTCGCAAGC
ACCCATTCCGCTTTCCTGCCGCCAAGGAGGTTGTACAAAACGTCACTGAA
CCTGGTGAAACAGAAAAACGCCAACTTCTTTTCTACGAGACTGACATGCT
GCCCGATAACTTACAATAA
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protein sequence of Gvermi12882.t1

>Gvermi12882.t1 ID=Gvermi12882.t1|Name=Gvermi12882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=423bp
MASSLDAMSSTRSRRRRFAKLRRQRSNAPRALAAALFFFLLCYEMVVLRP
PVVPKPPVSGRGAAPPSPPAPVAAVPPTHPPRPTQSSSMPSESAVGSHQA
SPNPHIVAKAAVSPSSISTRLAELQKISSYTSPPSTSHSLRAVADGEQAS
PSPSFHPLRKRNSHTSHPVSSSLAQMEKLAADRGDDQDDAKSKPRSPSEQ
SDRTLSKSEHRADPGAGENFWQWFQETKETEGTTNVSCPPDRERVCLMFY
KFIKKYKIRSVYDVSCAQNLEWVPDVVRKAGKELWGFKYYCNAPDAKDLE
RAKEKLSGLSYVQFAPDLWWRTGFAEDTQLLFAWDLLPHIAYGRIWSFFV
KSKAQNIKYLLFDNYPGIMNDPSPKRQYLNIRKHPFRFPAAKEVVQNVTE
PGETEKRQLLFYETDMLPDNLQ*
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mRNA from alignment at ScGOVlb_425:1914720..1916069-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12882.t1 ID=Gvermi12882.t1|Name=Gvermi12882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at ScGOVlb_425:1914720..1916069- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGAGCAGTCTCGACGCCATGAGCTCCACGCGTTCGCGCCGTCGCCG
CTTCGCAAAGCTGCGTCGGCAGCGCTCTAACGCCCCACGTGCCCTGGCTG
CCGCCCTCTTCTTCTTCCTCCTTTGCTACGAGATGGTTGTCTTGCGACCG
CCCGTCGTGCCCAAGCCCCCTGTTTCCGGCCGCGGTGCTGCGCCTCCGTC
TCCACCCGCGCCTGTTGCAGCGGTGCCTCCCACCCACCCGCCGCGCCCAA
CGCAAAGCTCCTCGATGCCATCTGAGTCTGCCGTCGGCTCCCATCAGGCC
TCGCCGAACCCCCATATCGTTGCCAAGGCTGCCGTGTCGCCATCGTCCAT
CTCCACCAGACTGGCTGAACTGCAAAAGATCTCGTCGTACACCAGCCCGC
CTTCCACTTCGCATTCGCTTCGTGCCGTTGCCGACGGCGAACAAGCCTCG
CCTTCCCCATCGTTTCACCCGCTCAGAAAACGCAATTCGCACACATCCCA
TCCAGTCTCCTCGTCTTTGGCGCAAATGGAGAAGCTGGCTGCTGACCGTG
GGGATGATCAAGACGACGCCAAGTCTAAACCACGCTCCCCTTCGGAACAG
TCCGACCGTACGCTTTCCAAGTCAGAACACCGTGCAGATCCTGGTGCGGG
AGAGAATTTCTGGCAGTGGTTTCAAGAGACAAAGGAGACCGAGGGGACCA
CCAACGTCTCGTGCCCACCAGACAGGGAGCGCGTTTGTCTCATGTTTTAC
AAGTTCATCAAAAAGTACAAGATTCGCTCTGTCTACGATGTGTCTTGTGC
ACAGAACTTGGAATGGGTTCCGGACGTTGTGCGAAAGGCTGGAAAGGAGT
TGTGGGGTTTCAAGTATTACTGCAATGCACCTGACGCAAAGGATCTAGAG
CGCGCTAAGGAAAAGCTCTCCGGGCTCTCCTACGTCCAATTTGCCCCAGA
TTTATGGTGGAGAACAGGTTTTGCCGAAGATACGCAGCTGCTCTTTGCCT
GGGACTTGTTACCCCACATCGCATATGGTCGAATTTGGAGTTTCTTTGTC
AAGTCAAAGGCACAAAATATCAAGTATCTCTTATTTGACAACTATCCAGG
GATCATGAACGACCCGGTACGTTTACAGCTCACAACGCTCCTGTTTCCCC
TCATACCTCAACTTACACGTCTTTGTTTCTAATCGCGTATCCCACAGTCT
CCAAAGCGACAATATCTGAATATTCGCAAGCACCCATTCCGCTTTCCTGC
CGCCAAGGAGGTTGTACAAAACGTCACTGAACCTGGTGAAACAGAAAAAC
GCCAACTTCTTTTCTACGAGACTGACATGCTGCCCGATAACTTACAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1914720..1916069-

>Gvermi12882.t1 ID=Gvermi12882.t1|Name=Gvermi12882.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1269bp|location=Sequence derived from alignment at ScGOVlb_425:1914720..1916069- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGAGCAGTCTCGACGCCATGAGCTCCACGCGTTCGCGCCGTCGCCG
CTTCGCAAAGCTGCGTCGGCAGCGCTCTAACGCCCCACGTGCCCTGGCTG
CCGCCCTCTTCTTCTTCCTCCTTTGCTACGAGATGGTTGTCTTGCGACCG
CCCGTCGTGCCCAAGCCCCCTGTTTCCGGCCGCGGTGCTGCGCCTCCGTC
TCCACCCGCGCCTGTTGCAGCGGTGCCTCCCACCCACCCGCCGCGCCCAA
CGCAAAGCTCCTCGATGCCATCTGAGTCTGCCGTCGGCTCCCATCAGGCC
TCGCCGAACCCCCATATCGTTGCCAAGGCTGCCGTGTCGCCATCGTCCAT
CTCCACCAGACTGGCTGAACTGCAAAAGATCTCGTCGTACACCAGCCCGC
CTTCCACTTCGCATTCGCTTCGTGCCGTTGCCGACGGCGAACAAGCCTCG
CCTTCCCCATCGTTTCACCCGCTCAGAAAACGCAATTCGCACACATCCCA
TCCAGTCTCCTCGTCTTTGGCGCAAATGGAGAAGCTGGCTGCTGACCGTG
GGGATGATCAAGACGACGCCAAGTCTAAACCACGCTCCCCTTCGGAACAG
TCCGACCGTACGCTTTCCAAGTCAGAACACCGTGCAGATCCTGGTGCGGG
AGAGAATTTCTGGCAGTGGTTTCAAGAGACAAAGGAGACCGAGGGGACCA
CCAACGTCTCGTGCCCACCAGACAGGGAGCGCGTTTGTCTCATGTTTTAC
AAGTTCATCAAAAAGTACAAGATTCGCTCTGTCTACGATGTGTCTTGTGC
ACAGAACTTGGAATGGGTTCCGGACGTTGTGCGAAAGGCTGGAAAGGAGT
TGTGGGGTTTCAAGTATTACTGCAATGCACCTGACGCAAAGGATCTAGAG
CGCGCTAAGGAAAAGCTCTCCGGGCTCTCCTACGTCCAATTTGCCCCAGA
TTTATGGTGGAGAACAGGTTTTGCCGAAGATACGCAGCTGCTCTTTGCCT
GGGACTTGTTACCCCACATCGCATATGGTCGAATTTGGAGTTTCTTTGTC
AAGTCAAAGGCACAAAATATCAAGTATCTCTTATTTGACAACTATCCAGG
GATCATGAACGACCCGTCTCCAAAGCGACAATATCTGAATATTCGCAAGC
ACCCATTCCGCTTTCCTGCCGCCAAGGAGGTTGTACAAAACGTCACTGAA
CCTGGTGAAACAGAAAAACGCCAACTTCTTTTCTACGAGACTGACATGCT
GCCCGATAACTTACAATAA
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