Gvermi12863.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12863.t1
Unique NameGvermi12863.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1833412..1834272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog121225.PHUM023420-PA
Preferred nameALYREF
PFAMsFYTT,FoP_duplication,RRM_1
Max annot lvl33208|Metazoa
KEGG koko:K12881
KEGG Pathwayko03013,ko03015,ko03040,ko05168,map03013,map03015,map03040,map05168
KEGG ModuleM00406,M00430
GOsGO:0000018,GO:0000346,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0031123,GO:0031124,GO:0031297,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0032784,GO:0032786,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044417,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0045005,GO:0045184,GO:0045893,GO:0045935,GO:0046483,GO:0046784,GO:0046907,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051052,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051836,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1902494,GO:1902579,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Evalue2.37e-13
EggNOG OGsKOG0533@1|root,KOG0533@2759|Eukaryota,38CX0@33154|Opisthokonta,3BCRA@33208|Metazoa,3CT6I@33213|Bilateria,41Z4N@6656|Arthropoda,3SM6B@50557|Insecta,3EARF@33342|Paraneoptera
DescriptionC-terminal duplication domain of Friend of PRMT1
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12863Gvermi12863Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1833412..1834272 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12863.t1.stop1Gvermi12863.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1833412..1833414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12863.t1.CDS1Gvermi12863.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1833412..1834272 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12863.t1.exon1Gvermi12863.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1833412..1834272 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12863.t1.start1Gvermi12863.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1834270..1834272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12863.t1Gvermi12863.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1833412..1834272 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12863.t1 ID=Gvermi12863.t1|Name=Gvermi12863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=287bp
MLNIDRPLDDIIKESIQAKRADRAARRRDQATKRKTPAPKARPTPATSAP
SADRSPEKEASLPAAKARRSISKKRKNRRKNNASTAAPADAQNNMRVEPA
PHPIVTNAAPHYLPSSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPL
KSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVT
TRSKNARDNSSKKSQPADDDYRDQSRSPENDTFDRKDSPFGDRNRNGQQA
RRGRRRNRRQFRAPAPGANQEREERDRPDGRDGYAD*
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spliced messenger RNA

>Gvermi12863.t1 ID=Gvermi12863.t1|Name=Gvermi12863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_425:1833412..1834272- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACATCGACCGCCCCCTCGACGACATCATCAAGGAGTCCATCCA
GGCCAAGCGTGCCGACCGCGCAGCCCGCCGACGTGACCAGGCCACCAAGC
GCAAGACTCCTGCGCCAAAGGCCCGCCCCACACCCGCCACATCCGCCCCC
TCTGCCGACCGCAGCCCGGAGAAGGAAGCCAGTCTCCCGGCTGCCAAGGC
GCGACGCTCCATCTCCAAGAAGCGTAAGAACCGCCGCAAGAACAACGCTT
CGACTGCCGCCCCCGCCGACGCGCAGAACAACATGCGCGTGGAACCCGCC
CCGCACCCCATCGTCACCAACGCCGCCCCGCACTACCTACCCTCCTCGGC
CCAGAAGCGCTCAAATGGCGTTAAGGTCGTCGTCTCCAACCTGCACCCCG
GTGTCACACAGAGTGACATCGCCGAGCTGTTCGAGACTGTCGGCCCGCTG
AAGAGTGCCGTTCTGCCCCGCTATCAGAACGGCACCTCTTCGTGTGAGGC
CGAAGTCATCTTCGAGAACATGCCGGATGCACTGGAGGCCATCAAGAGGT
ATAACCTGGTGCCTCTTGATAACCAGCCGCTCCAGATCACGCTGGTAACC
ACGCGCTCGAAGAACGCGAGGGACAACTCGTCCAAGAAGTCCCAGCCAGC
GGACGACGATTATCGTGATCAGTCTCGCTCCCCGGAGAATGACACATTTG
ATCGCAAGGATTCCCCGTTCGGCGATCGCAACCGCAACGGGCAACAGGCG
CGCCGCGGCCGCCGCCGCAATCGGAGGCAGTTCAGAGCCCCGGCGCCAGG
TGCCAATCAGGAGCGTGAGGAGCGCGATCGCCCTGATGGACGCGATGGCT
ATGCCGACTAG
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protein sequence of Gvermi12863.t1

>Gvermi12863.t1 ID=Gvermi12863.t1|Name=Gvermi12863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=287bp
MLNIDRPLDDIIKESIQAKRADRAARRRDQATKRKTPAPKARPTPATSAP
SADRSPEKEASLPAAKARRSISKKRKNRRKNNASTAAPADAQNNMRVEPA
PHPIVTNAAPHYLPSSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPL
KSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVT
TRSKNARDNSSKKSQPADDDYRDQSRSPENDTFDRKDSPFGDRNRNGQQA
RRGRRRNRRQFRAPAPGANQEREERDRPDGRDGYAD*
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mRNA from alignment at ScGOVlb_425:1833412..1834272-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12863.t1 ID=Gvermi12863.t1|Name=Gvermi12863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_425:1833412..1834272- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAACATCGACCGCCCCCTCGACGACATCATCAAGGAGTCCATCCA
GGCCAAGCGTGCCGACCGCGCAGCCCGCCGACGTGACCAGGCCACCAAGC
GCAAGACTCCTGCGCCAAAGGCCCGCCCCACACCCGCCACATCCGCCCCC
TCTGCCGACCGCAGCCCGGAGAAGGAAGCCAGTCTCCCGGCTGCCAAGGC
GCGACGCTCCATCTCCAAGAAGCGTAAGAACCGCCGCAAGAACAACGCTT
CGACTGCCGCCCCCGCCGACGCGCAGAACAACATGCGCGTGGAACCCGCC
CCGCACCCCATCGTCACCAACGCCGCCCCGCACTACCTACCCTCCTCGGC
CCAGAAGCGCTCAAATGGCGTTAAGGTCGTCGTCTCCAACCTGCACCCCG
GTGTCACACAGAGTGACATCGCCGAGCTGTTCGAGACTGTCGGCCCGCTG
AAGAGTGCCGTTCTGCCCCGCTATCAGAACGGCACCTCTTCGTGTGAGGC
CGAAGTCATCTTCGAGAACATGCCGGATGCACTGGAGGCCATCAAGAGGT
ATAACCTGGTGCCTCTTGATAACCAGCCGCTCCAGATCACGCTGGTAACC
ACGCGCTCGAAGAACGCGAGGGACAACTCGTCCAAGAAGTCCCAGCCAGC
GGACGACGATTATCGTGATCAGTCTCGCTCCCCGGAGAATGACACATTTG
ATCGCAAGGATTCCCCGTTCGGCGATCGCAACCGCAACGGGCAACAGGCG
CGCCGCGGCCGCCGCCGCAATCGGAGGCAGTTCAGAGCCCCGGCGCCAGG
TGCCAATCAGGAGCGTGAGGAGCGCGATCGCCCTGATGGACGCGATGGCT
ATGCCGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1833412..1834272-

>Gvermi12863.t1 ID=Gvermi12863.t1|Name=Gvermi12863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=861bp|location=Sequence derived from alignment at ScGOVlb_425:1833412..1834272- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAACATCGACCGCCCCCTCGACGACATCATCAAGGAGTCCATCCA
GGCCAAGCGTGCCGACCGCGCAGCCCGCCGACGTGACCAGGCCACCAAGC
GCAAGACTCCTGCGCCAAAGGCCCGCCCCACACCCGCCACATCCGCCCCC
TCTGCCGACCGCAGCCCGGAGAAGGAAGCCAGTCTCCCGGCTGCCAAGGC
GCGACGCTCCATCTCCAAGAAGCGTAAGAACCGCCGCAAGAACAACGCTT
CGACTGCCGCCCCCGCCGACGCGCAGAACAACATGCGCGTGGAACCCGCC
CCGCACCCCATCGTCACCAACGCCGCCCCGCACTACCTACCCTCCTCGGC
CCAGAAGCGCTCAAATGGCGTTAAGGTCGTCGTCTCCAACCTGCACCCCG
GTGTCACACAGAGTGACATCGCCGAGCTGTTCGAGACTGTCGGCCCGCTG
AAGAGTGCCGTTCTGCCCCGCTATCAGAACGGCACCTCTTCGTGTGAGGC
CGAAGTCATCTTCGAGAACATGCCGGATGCACTGGAGGCCATCAAGAGGT
ATAACCTGGTGCCTCTTGATAACCAGCCGCTCCAGATCACGCTGGTAACC
ACGCGCTCGAAGAACGCGAGGGACAACTCGTCCAAGAAGTCCCAGCCAGC
GGACGACGATTATCGTGATCAGTCTCGCTCCCCGGAGAATGACACATTTG
ATCGCAAGGATTCCCCGTTCGGCGATCGCAACCGCAACGGGCAACAGGCG
CGCCGCGGCCGCCGCCGCAATCGGAGGCAGTTCAGAGCCCCGGCGCCAGG
TGCCAATCAGGAGCGTGAGGAGCGCGATCGCCCTGATGGACGCGATGGCT
ATGCCGACTAG
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