Gvermi12863.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male
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Overview
Homology
BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A2V3J1D7_9FLOR (THO complex subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1D7_9FLOR) HSP 1 Score: 321 bits (823), Expect = 3.970e-107 Identity = 200/297 (67.34%), Postives = 223/297 (75.08%), Query Frame = 0
Query: 1 MLNIDRPLDDIIKESIQAKRADRAAXXXXXXXXXXXXXXXXXPTPATSAPSADRSPEKEASLPAAKARRSISKKRKNRRK----------NNASTAAPADAQNNMRVEPAPHPIVTNAAPHYLPSSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNARDNSSKKSQPADDDYRDQSRSPENDTFDRKDSPFGDRNRNGQQARRGXXXXXXX-FRAPAPGANQEREERDRPDGRDGYAD 286
M+NIDRPLDDIIKES++AKRADRAA PA SAP +RSPEK+A+LPAAK+RRSI+ ++ +A PA A + +EPAPH YL SSAQ+RSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRY +GTS+CEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKN+RDN+ KKSQP D +YRD SRSP + F+RKDSPF DRNRNGQQ RR XXXXXXX FR PAPG NQ+RE+RDR D RDGYAD
Sbjct: 1 MMNIDRPLDDIIKESLEAKRADRAARRRDQGATKRKAPNNKSRPPA-SAPPKERSPEKDATLPAAKSRRSITXXXXXXXXXXXXXXXXXXDSNGSAEPAPATASAPMEPAPH---------YLSSSAQRRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYPSGTSTCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNSRDNAPKKSQPVDAEYRDHSRSP-GEPFERKDSPFADRNRNGQQGRRXXXXXXXXXFRGPAPGPNQDREDRDRRDDRDGYAD 286
BLAST of Gvermi12863.t1 vs. uniprot
Match: R7Q9Y4_CHOCR (Similar to Aly, THO complex subunit, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9Y4_CHOCR) HSP 1 Score: 125 bits (313), Expect = 4.180e-30 Identity = 98/235 (41.70%), Postives = 118/235 (50.21%), Query Frame = 0
Query: 2 LNIDRPLDDIIKESIQAKRADRAAXXXXXXXXXXXXXXXXXPTPATSAPSADR-SPEKEASLPAAKARRSISK-----------------------KRKNRRKNNA--STAAPADAQNN---MRVEPAPHPI-----VTNAAPHYLPSSAQKRSN--GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVT 200
+NIDRPLD+I+KES+ A++A R A T T + + + SP L AK SISK +R N NNA + AP N R + AP V N A +R+ GVK+ VSNLHPGVT++DI ELFETVGP+K A L + NG S+CEAEVIFE M DALEAI RYN VPLDN PL ITL T
Sbjct: 1 MNIDRPLDEIVKESVAARKAARQAKRKEIAQTKK--------TKGTDSAAVQKASPVLAQKLGVAKKEGSISKXXXXXXXXXXXXXXXXXXXXXXXRRTNGNTNNARPNGNAPRPQSRNDKPFRNDKAPRSSQHQGGVANRLSTKASGQAARRATPKGVKIRVSNLHPGVTETDIGELFETVGPIKKAHLKTFANGHSACEAEVIFERMADALEAINRYNQVPLDNHPLHITLAT 227
BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A1X6P4P6_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4P6_PORUM) HSP 1 Score: 90.1 bits (222), Expect = 2.960e-17 Identity = 90/221 (40.72%), Postives = 119/221 (53.85%), Query Frame = 0
Query: 2 LNIDRPLDDIIKESIQAKRADRAAXXXXXXXXXXXXXXXXXPTPATSAPSADRSPEKE--ASLPAAKARRS-------------ISKKRKNRRKNNASTAAPADAQNNMRVEPAPHPIVTNAAPHYLPSSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNAR 207
+NIDR LDDI+KE+ ++R+ + A XXXXXXXXXXX T A + R + A++ A AR S ISKK R S+A A +E I AA ++A K + G K+VV NLH GVT DI +LF VG L+ A++ G S+ AEV+F DALE+IKRYN VPLDN+PL+I+L T+ S +R
Sbjct: 4 MNIDRALDDIVKENRASRRSTKKAADGAXXXXXXXXXXXMEGTGARKSRRRRRKTGERGYAAMDAESARMSDTLSRRTAKGGGSISKKGGRARGGGLSSATVAAISRAGAME-----IERKAAA--AAANASKANAGCKIVVHNLHHGVTNGDINDLFSGVGKLQRALVIYDVRGNSTGVAEVVFARRDDALESIKRYNGVPLDNKPLRISLATSDSPTSR 217
BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A7S0G117_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G117_9RHOD) HSP 1 Score: 85.1 bits (209), Expect = 7.020e-17 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
Query: 115 SSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVT 200
S + +S G K+VV NL PGV+ DI +LF+ +GP+K A++ +G S+ AEV+F + DAL AI +YN VPLDN+PL+I+L T
Sbjct: 28 SKSMSQSPGAKIVVGNLDPGVSNGDINDLFKGIGPIKQAMVIFNSDGKSTGSAEVVFASTDDALAAIAKYNGVPLDNRPLEISLST 113
BLAST of Gvermi12863.t1 vs. uniprot
Match: V4UVU1_CITCL (RRM domain-containing protein n=2 Tax=Citrus TaxID=2706 RepID=V4UVU1_CITCL) HSP 1 Score: 77.0 bits (188), Expect = 3.050e-13 Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0
Query: 123 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 204
G K+ VSNLHPGVT DI ELF +G LK + +NG S AEV++ DA A+KRYN V LD +P++I +V T ++
Sbjct: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179
BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A835LM92_9MAGN (RRM domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LM92_9MAGN) HSP 1 Score: 78.2 bits (191), Expect = 3.850e-13 Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 0
Query: 123 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTT 201
G K+ VSNLH GVT DI ELF +G LK + +NG SS AEVIF DAL A+KRYN V LD +P+ I ++ T
Sbjct: 82 GAKLYVSNLHSGVTNEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGT 160
BLAST of Gvermi12863.t1 vs. uniprot
Match: M2XDQ2_GALSU (RRM domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XDQ2_GALSU) HSP 1 Score: 75.9 bits (185), Expect = 9.450e-13 Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0
Query: 119 KRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNAR 207
KR+ +V V+NL GVT DI +LF VG ++ A + +NG S+ A+V+F + ALEAIKRYN VPLD +P++++LV+ R + +R
Sbjct: 85 KRNQITRVQVTNLALGVTNKDINDLFSEVGKMRQAFVKFDRNGRSTGIAQVVFYDRASALEAIKRYNGVPLDGKPMKLSLVSNRGRLSR 173
BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A7S0D067_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D067_MICPS) HSP 1 Score: 76.6 bits (187), Expect = 9.710e-13 Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 0
Query: 125 KVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLV 199
K+++SNLHP VT DI ELF VG +K A L QNG S AEVI DA++AIK YN V LD +PL+I LV
Sbjct: 82 KLIISNLHPNVTNQDIKELFSQVGQVKKAGLNFDQNGRSKGTAEVILARRQDAMQAIKTYNGVKLDGRPLRIELV 156
BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A067EA94_CITSI (RRM domain-containing protein n=6 Tax=Citrus TaxID=2706 RepID=A0A067EA94_CITSI) HSP 1 Score: 77.0 bits (188), Expect = 1.090e-12 Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0
Query: 123 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 204
G K+ VSNLHPGVT DI ELF +G LK + +NG S AEV++ DA A+KRYN V LD +P++I +V T ++
Sbjct: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179
BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A0E0HYG8_ORYNI (RRM domain-containing protein n=1 Tax=Oryza nivara TaxID=4536 RepID=A0A0E0HYG8_ORYNI) HSP 1 Score: 73.2 bits (178), Expect = 1.560e-12 Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0
Query: 115 SSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 204
++A+ G K+ +SNL PGVT D+ ELF +G LK + ++G S AEV+F DALEAIKRY+ V LD P++I L+ S+
Sbjct: 14 AAARSLETGTKLHISNLDPGVTVDDVQELFSEIGELKRYSVNYDKDGKSQGTAEVVFARKVDALEAIKRYDGVILDGNPMKIDLIGNNSE 103 The following BLAST results are available for this feature:
BLAST of Gvermi12863.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gvermi12863.t1 ID=Gvermi12863.t1|Name=Gvermi12863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=287bpback to top |