Gvermi12833.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12833.t1
Unique NameGvermi12833.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1734837..1735550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12833Gvermi12833Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1734837..1735550 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12833.t1.start1Gvermi12833.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1734837..1734839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12833.t1.CDS1Gvermi12833.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1734837..1735550 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12833.t1.exon1Gvermi12833.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1734837..1735550 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12833.t1.stop1Gvermi12833.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1735548..1735550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12833.t1Gvermi12833.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1734837..1735550 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12833.t1 ID=Gvermi12833.t1|Name=Gvermi12833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=238bp
LSSVARSLASARARAALRAAPPLAPPSQVVMRPSVITATPRLLRHFSAVS
GADASAHVIYRNPRRVRAAGMTALAVGQAGFWGAATTLAQQAPEPLISSG
WGIAGFGLSAAFAALVNAYLRRNVAQIELLNAAAIRVTAHSFGGMLSHPR
VIHPRELVAGPHRDSHKERYWTFGVSSAASRTPFFYFVDTKSGVLDAAAM
AALVNGGEHLLAFSHKRDAQIMTNRWHQWEKASGRAA*
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spliced messenger RNA

>Gvermi12833.t1 ID=Gvermi12833.t1|Name=Gvermi12833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=714bp|location=Sequence derived from alignment at ScGOVlb_425:1734837..1735550+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCAtcggtcgctcgctcgctcgcaagcgcgcgcgcgcgcgccgcgct
GCGAGCCGCACCCCCACTTGCGCCGCCGTCGCAGGTCGTCATGCGCCCCT
CCGTCATCACCGCGACGCCTCGCCTGCTTCGCCACTTCTCCGCAGTCTCC
GGCGCCGACGCATCCGCTCATGTCATCTACCGCAACCCCCGCCGCGTGCG
CGCCGCGGGAATGACGGCTTTGGCCGTGGGCCAGGCCGGCTTCTGGGGCG
CAGCCACCACACTTGCGCAACAAGCTCCGGAGCCGTTGATCAGCTCCGGC
TGGGGGATTGCCGGCTTCGGCCTCAGTGCCGCTTTTGCCGCCCTGGTCAA
TGCGTACTTGCGTCGAAACGTTGCCCAAATTGAGCTGCTCAACGCCGCCG
CTATTCGTGTCACCGCCCATTCTTTTGGCGGTATGCTTTCTCATCCGCGT
GTTATCCACCCACGAGAACTCGTCGCTGGGCCCCATCGCGACAGTCACAA
AGAGCGATACTGGACGTTTGGAGTCTCTTCCGCCGCGTCGAGAACGCCCT
TTTTCTACTTTGTTGATACCAAGAGCGGCGTTCTTGACGCCGCCGCCATG
GCCGCTCTTGTCAACGGCGGGGAACACCTGCTTGCTTTTTCGCACAAGCG
CGACGCACAAATCATGACCAATCGATGGCACCAGTGGGAAAAGGCCTCCG
GCAGAGCTGCCTAG
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protein sequence of Gvermi12833.t1

>Gvermi12833.t1 ID=Gvermi12833.t1|Name=Gvermi12833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=238bp
LSSVARSLASARARAALRAAPPLAPPSQVVMRPSVITATPRLLRHFSAVS
GADASAHVIYRNPRRVRAAGMTALAVGQAGFWGAATTLAQQAPEPLISSG
WGIAGFGLSAAFAALVNAYLRRNVAQIELLNAAAIRVTAHSFGGMLSHPR
VIHPRELVAGPHRDSHKERYWTFGVSSAASRTPFFYFVDTKSGVLDAAAM
AALVNGGEHLLAFSHKRDAQIMTNRWHQWEKASGRAA*
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mRNA from alignment at ScGOVlb_425:1734837..1735550+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12833.t1 ID=Gvermi12833.t1|Name=Gvermi12833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=714bp|location=Sequence derived from alignment at ScGOVlb_425:1734837..1735550+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTCAtcggtcgctcgctcgctcgcaagcgcgcgcgcgcgcgccgcgct
GCGAGCCGCACCCCCACTTGCGCCGCCGTCGCAGGTCGTCATGCGCCCCT
CCGTCATCACCGCGACGCCTCGCCTGCTTCGCCACTTCTCCGCAGTCTCC
GGCGCCGACGCATCCGCTCATGTCATCTACCGCAACCCCCGCCGCGTGCG
CGCCGCGGGAATGACGGCTTTGGCCGTGGGCCAGGCCGGCTTCTGGGGCG
CAGCCACCACACTTGCGCAACAAGCTCCGGAGCCGTTGATCAGCTCCGGC
TGGGGGATTGCCGGCTTCGGCCTCAGTGCCGCTTTTGCCGCCCTGGTCAA
TGCGTACTTGCGTCGAAACGTTGCCCAAATTGAGCTGCTCAACGCCGCCG
CTATTCGTGTCACCGCCCATTCTTTTGGCGGTATGCTTTCTCATCCGCGT
GTTATCCACCCACGAGAACTCGTCGCTGGGCCCCATCGCGACAGTCACAA
AGAGCGATACTGGACGTTTGGAGTCTCTTCCGCCGCGTCGAGAACGCCCT
TTTTCTACTTTGTTGATACCAAGAGCGGCGTTCTTGACGCCGCCGCCATG
GCCGCTCTTGTCAACGGCGGGGAACACCTGCTTGCTTTTTCGCACAAGCG
CGACGCACAAATCATGACCAATCGATGGCACCAGTGGGAAAAGGCCTCCG
GCAGAGCTGCCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1734837..1735550+

>Gvermi12833.t1 ID=Gvermi12833.t1|Name=Gvermi12833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=714bp|location=Sequence derived from alignment at ScGOVlb_425:1734837..1735550+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTCAtcggtcgctcgctcgctcgcaagcgcgcgcgcgcgcgccgcgct
GCGAGCCGCACCCCCACTTGCGCCGCCGTCGCAGGTCGTCATGCGCCCCT
CCGTCATCACCGCGACGCCTCGCCTGCTTCGCCACTTCTCCGCAGTCTCC
GGCGCCGACGCATCCGCTCATGTCATCTACCGCAACCCCCGCCGCGTGCG
CGCCGCGGGAATGACGGCTTTGGCCGTGGGCCAGGCCGGCTTCTGGGGCG
CAGCCACCACACTTGCGCAACAAGCTCCGGAGCCGTTGATCAGCTCCGGC
TGGGGGATTGCCGGCTTCGGCCTCAGTGCCGCTTTTGCCGCCCTGGTCAA
TGCGTACTTGCGTCGAAACGTTGCCCAAATTGAGCTGCTCAACGCCGCCG
CTATTCGTGTCACCGCCCATTCTTTTGGCGGTATGCTTTCTCATCCGCGT
GTTATCCACCCACGAGAACTCGTCGCTGGGCCCCATCGCGACAGTCACAA
AGAGCGATACTGGACGTTTGGAGTCTCTTCCGCCGCGTCGAGAACGCCCT
TTTTCTACTTTGTTGATACCAAGAGCGGCGTTCTTGACGCCGCCGCCATG
GCCGCTCTTGTCAACGGCGGGGAACACCTGCTTGCTTTTTCGCACAAGCG
CGACGCACAAATCATGACCAATCGATGGCACCAGTGGGAAAAGGCCTCCG
GCAGAGCTGCCTAG
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