Gvermi12833.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12833.t1
Unique NameGvermi12833.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length238
Homology
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BLAST of Gvermi12833.t1 vs. uniprot
Match: A0A2V3IZT8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZT8_9FLOR)

HSP 1 Score: 282 bits (721), Expect = 1.380e-93
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 0 
Query:   30 VMRPSVITATPRLLRHFSAVSGADASAHVIYRNPRRVRAAGMTALAVGQAGFWGAATTLAQQAPEPLISSGWGIAGFGLSAAFAALVNAYLRRNVAQIELLNAAAIRVTAHSFGGMLSHPRVIHPRELVAGPHRDSHKERYWTFGVSSAASRTPFFYFVDTKSGVLDAAAMAALVNGGEHLLAFSHKRDAQIMTNRWHQWEKASGR 235
            VM P   TA   L  + +  S +  SAH+IY NPRR+RAAGMT LAVGQAGFWG AT LAQQAPEPLISSGW +AG GLSAAFAA+VNAYLRRNVA+I LLN A+IRVTAHSFGGMLS P V  P  +V GP RD   ERYWTFGV S++ R PF+YFVDT  GVLD  A+AALVNGGEHL+AFSHKRDAQIMT+RWHQW++ SG+
Sbjct:    3 VMNPIRSTARIALRSYSTPPSSSTRSAHIIYNNPRRLRAAGMTLLAVGQAGFWGMATALAQQAPEPLISSGWTVAGVGLSAAFAAMVNAYLRRNVAEIALLNGASIRVTAHSFGGMLSTPVVFTPHTIVRGPKRDDPSERYWTFGVKSSSPR-PFYYFVDTSHGVLDRHALAALVNGGEHLMAFSHKRDAQIMTSRWHQWQQISGK 207
The following BLAST results are available for this feature:
BLAST of Gvermi12833.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZT8_9FLOR1.380e-9370.39Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR045325TMEM70/TMEM186/TMEM223 protein familyPFAMPF06979TMEM70coord: 57..193
e-value: 1.8E-5
score: 24.6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..67
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 101..120
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 90..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 68..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 121..237
NoneNo IPR availableTMHMMTMhelixcoord: 66..88
NoneNo IPR availableTMHMMTMhelixcoord: 98..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1734837..1735550 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12833.t1Gvermi12833.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1734837..1735550 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12833.t1 ID=Gvermi12833.t1|Name=Gvermi12833.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=238bp
LSSVARSLASARARAALRAAPPLAPPSQVVMRPSVITATPRLLRHFSAVS
GADASAHVIYRNPRRVRAAGMTALAVGQAGFWGAATTLAQQAPEPLISSG
WGIAGFGLSAAFAALVNAYLRRNVAQIELLNAAAIRVTAHSFGGMLSHPR
VIHPRELVAGPHRDSHKERYWTFGVSSAASRTPFFYFVDTKSGVLDAAAM
AALVNGGEHLLAFSHKRDAQIMTNRWHQWEKASGRAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR045325TMEM70/TMEM186/TMEM223