Gvermi12741.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12741.t1
Unique NameGvermi12741.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length80
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1358268..1358629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S179_34V6.1
Max annot lvl35493|Streptophyta
Evalue7.53e-13
EggNOG OGs2BVTD@1|root,2S46B@2759|Eukaryota,37WA7@33090|Viridiplantae,3GK1U@35493|Streptophyta
DescriptionNADH dehydrogenase ubiquinone 1 beta subcomplex subunit
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12741Gvermi12741Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1358268..1358629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12741.t1Gvermi12741.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1358268..1358629 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12741.t1.stop1Gvermi12741.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1358268..1358270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12741.t1.CDS1Gvermi12741.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1358268..1358345 -
Gvermi12741.t1.CDS2Gvermi12741.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1358468..1358629 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12741.t1.exon1Gvermi12741.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1358268..1358345 -
Gvermi12741.t1.exon2Gvermi12741.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1358468..1358629 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12741.t1.intron1Gvermi12741.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1358346..1358467 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12741.t1.start1Gvermi12741.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1358627..1358629 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12741.t1 ID=Gvermi12741.t1|Name=Gvermi12741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=80bp
MGGEAPKGAVRGEPYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDL
PHMLGFEKPWEHAHGGAHGHDGSDGAEDE*
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spliced messenger RNA

>Gvermi12741.t1 ID=Gvermi12741.t1|Name=Gvermi12741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=240bp|location=Sequence derived from alignment at ScGOVlb_425:1358268..1358629- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGAGAAGCTCCGAAGGGCGCCGTGCGCGGCGAGCCGTACGGGGG
GTTCAAGCCGCACGCGCCGGCCAGGTGGCATTCGCGCCTTGGGTACGCGT
TCGGCGTGACGATGTGGCTGTGGGTGTTTTACCGCGCCAAGCAGGATCTG
CCTCACATGCTTGGGTTTGAAAAGCCGTGGGAACACGCGCATGGCGGTGC
GCACGGGCACGACGGAAGCGACGGCGCCGAAGACGAGTAA
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protein sequence of Gvermi12741.t1

>Gvermi12741.t1 ID=Gvermi12741.t1|Name=Gvermi12741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=80bp
MGGEAPKGAVRGEPYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDL
PHMLGFEKPWEHAHGGAHGHDGSDGAEDE*
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mRNA from alignment at ScGOVlb_425:1358268..1358629-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12741.t1 ID=Gvermi12741.t1|Name=Gvermi12741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=362bp|location=Sequence derived from alignment at ScGOVlb_425:1358268..1358629- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGGAGAAGCTCCGAAGGGCGCCGTGCGCGGCGAGCCGTACGGGGG
GTTCAAGCCGCACGCGCCGGCCAGGTGGCATTCGCGCCTTGGGTACGCGT
TCGGCGTGACGATGTGGCTGTGGGTGTTTTACCGCGCCAAGCAGGATCTG
CCTCACATGCTTGTACGTGTTGCGTGCGGAGCGGGGAGCGCGCGTGGCGC
ACGGACGGCGACGACGGCGACTGACGAAGCTGTTGTTTTGGCGCGCGGCG
GGGTGGGCGTGGTGGTGGTGGCGGCGGCGAGCAGGGGTTTGAAAAGCCGT
GGGAACACGCGCATGGCGGTGCGCACGGGCACGACGGAAGCGACGGCGCC
GAAGACGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1358268..1358629-

>Gvermi12741.t1 ID=Gvermi12741.t1|Name=Gvermi12741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=240bp|location=Sequence derived from alignment at ScGOVlb_425:1358268..1358629- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGGAGAAGCTCCGAAGGGCGCCGTGCGCGGCGAGCCGTACGGGGG
GTTCAAGCCGCACGCGCCGGCCAGGTGGCATTCGCGCCTTGGGTACGCGT
TCGGCGTGACGATGTGGCTGTGGGTGTTTTACCGCGCCAAGCAGGATCTG
CCTCACATGCTTGGGTTTGAAAAGCCGTGGGAACACGCGCATGGCGGTGC
GCACGGGCACGACGGAAGCGACGGCGCCGAAGACGAGTAA
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