Gvermi12741.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12741.t1
Unique NameGvermi12741.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length80
Homology
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A2V3IFY9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFY9_9FLOR)

HSP 1 Score: 121 bits (304), Expect = 1.260e-34
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = 0
Query:    1 MGGEAPKGAVRGEPYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEHAHG 65
            MGGE P+  V GEPYGGFKP  P RW SRLGYAFGVTMWLWVFYRAK DLPHMLGFEKPWEH HG
Sbjct:    1 MGGETPRYPVPGEPYGGFKPIPPPRWQSRLGYAFGVTMWLWVFYRAKNDLPHMLGFEKPWEHHHG 65          
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A1X6NLL5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLL5_PORUM)

HSP 1 Score: 86.3 bits (212), Expect = 1.270e-20
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 0
Query:    1 MGGEAPKGAVRGE-PYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEH-AHGGAH 68
            M G  P  A  G  P+GG+ P A  +W +R G A G  MWLW+FYRAK DLPHMLG+EKPW+H AHGG H
Sbjct:    1 MAGPPPPYAPGGSRPFGGWAPPAVPKWQTRTGTAMGAVMWLWIFYRAKNDLPHMLGWEKPWDHHAHGGDH 70          
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A167GNA3_CALVF (Uncharacterized protein n=2 Tax=Calocera TaxID=29888 RepID=A0A167GNA3_CALVF)

HSP 1 Score: 67.4 bits (163), Expect = 3.370e-13
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:   12 GEPYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEHAHGGAHGHD 71
            G  Y GF PH P+R+H  L  A G +MW +VFYRA+QD P +LG+  PWE  H  A GHD
Sbjct:    7 GTSYAGFHPHPPSRFHVYLAKALGASMWFFVFYRARQDGPRVLGWRHPWEGHH--ADGHD 64          
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A6P5NAP7_ARADU (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5NAP7_ARADU)

HSP 1 Score: 67.0 bits (162), Expect = 4.440e-13
Identity = 35/72 (48.61%), Postives = 38/72 (52.78%), Query Frame = 0
Query:    1 MGGEAPKGAVRGEPYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWE----HAHGGAH 68
            MGG    G   G  Y G   H P RWH+  G      MW WVFYRAKQD P +LG+  PWE    H HGG H
Sbjct:    1 MGG----GHGEGTTYKGITIHQPKRWHTVAGKGLCAVMWFWVFYRAKQDGPVVLGWRHPWEGHDDHGHGGGH 68          
BLAST of Gvermi12741.t1 vs. uniprot
Match: UPI001CC7D429 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC7D429)

HSP 1 Score: 65.9 bits (159), Expect = 1.480e-12
Identity = 30/60 (50.00%), Postives = 34/60 (56.67%), Query Frame = 0
Query:   15 YGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEHAHGGAHGHDGSD 74
            Y GF  H P RWH+  G      MW WVFYRAKQD P +LG+  PWE      HGH+  D
Sbjct:   14 YKGFTMHRPKRWHTVTGKGLCAIMWFWVFYRAKQDGPVVLGWRHPWEGHDSHGHGHESHD 73          
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A7S3L8G8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8G8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.190e-12
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0
Query:   27 HSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEHAHGGAHGHDGSD 74
            H+R G AFGV  WLWVF+RA+QDLP M GF  PWEH  G  HGH G D
Sbjct:   42 HTRWGEAFGVVTWLWVFHRARQDLPVMYGFRHPWEH--GDDHGHGGGD 87          
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A7I8KI83_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KI83_SPIIN)

HSP 1 Score: 65.1 bits (157), Expect = 3.730e-12
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 0
Query:    1 MGGEAPKGAVRGEPYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEHAHGGAHGHD 71
            MGG    G   G  Y G   H P RWH+  G      MW W+FYRAKQD P +LG+  PWE     +HGH+
Sbjct:    1 MGG----GHGAGSTYKGVTIHHPKRWHTVTGKGLCAVMWFWIFYRAKQDAPVVLGWRHPWEGHEAHSHGHE 67          
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A7S2KLZ2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KLZ2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.470e-12
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 0
Query:   16 GGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEHAHGGAH 68
            G   P   + WH++ G A G  MW+W+FYRAKQDLP +LG   PW+H  G  H
Sbjct:   30 GSHPPFTVSEWHTKGGEAIGFVMWMWIFYRAKQDLPVVLGLRHPWDHVEGDDH 82          
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A7I8IRE3_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IRE3_SPIIN)

HSP 1 Score: 63.5 bits (153), Expect = 1.510e-11
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 0
Query:    1 MGGEAPKGAVRGEPYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEHAHGGAHGHD 71
            MGG    G   G  Y G   H P RWH+  G      MW W+FYRAKQD P +LG+  PWE     +HGH+
Sbjct:    1 MGG----GHGAGTTYKGVTIHHPKRWHTVTGKGLCAVMWFWIFYRAKQDGPVVLGWRHPWEGHEAHSHGHE 67          
BLAST of Gvermi12741.t1 vs. uniprot
Match: A0A8H7Q033_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q033_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 2.380e-11
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 0
Query:   17 GFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDLPHMLGFEKPWEHAHGGAH 68
            GF PH    WH     A G +MW W+ YRAKQD+P +LG+  PW+  HG  H
Sbjct:    4 GFHPHLAGAWHRYGSKALGASMWFWMMYRAKQDMPVLLGWRHPWDGHHGDEH 55          
The following BLAST results are available for this feature:
BLAST of Gvermi12741.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFY9_9FLOR1.260e-3483.08Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NLL5_PORUM1.270e-2058.57Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A167GNA3_CALVF3.370e-1353.33Uncharacterized protein n=2 Tax=Calocera TaxID=298... [more]
A0A6P5NAP7_ARADU4.440e-1348.61NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
UPI001CC7D4291.480e-1250.00NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S3L8G8_9STRA2.190e-1264.58Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7I8KI83_SPIIN3.730e-1245.07Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A7S2KLZ2_9STRA7.470e-1249.06Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7I8IRE3_SPIIN1.510e-1145.07Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A8H7Q033_9FUNG2.380e-1148.08Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044980NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, plant/fungiPANTHERPTHR36987NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 2-LIKEcoord: 8..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..44
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 45..79
NoneNo IPR availableTMHMMTMhelixcoord: 26..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1358268..1358629 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12741.t1Gvermi12741.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1358268..1358629 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12741.t1 ID=Gvermi12741.t1|Name=Gvermi12741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=80bp
MGGEAPKGAVRGEPYGGFKPHAPARWHSRLGYAFGVTMWLWVFYRAKQDL
PHMLGFEKPWEHAHGGAHGHDGSDGAEDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044980NDUFB2_plant/fungi